Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46188 * 2 1 4 4 O 1.42901 * 109.47156 * 59.97267 * 3 2 1 5 5 C 1.53047 * 109.45938 * 119.97252 * 2 1 3 6 6 C 1.53188 * 109.31419 * 58.64021 * 5 2 1 7 7 N 1.46927 * 108.77539 * 54.63212 * 6 5 2 8 8 S 1.65601 * 120.62705 * 126.36834 * 7 6 5 9 9 O 1.42101 * 106.40318 * 336.46540 * 8 7 6 10 10 O 1.42100 * 106.40446 * 203.54373 * 8 7 6 11 11 C 1.76202 * 107.21908 * 90.00199 * 8 7 6 12 12 H 1.08005 * 119.99646 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00219 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.46922 * 118.74238 * 306.64832 * 7 6 5 20 20 C 1.52757 * 109.00859 * 53.30354 * 19 7 6 21 21 H 1.09002 * 109.56521 * 185.55237 * 20 19 7 22 22 O 1.42903 * 109.38743 * 65.52087 * 20 19 7 23 23 H 1.09007 * 109.47163 * 300.03105 * 1 2 3 24 24 H 1.09004 * 109.47375 * 60.02826 * 1 2 3 25 25 H 1.09003 * 109.47572 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47013 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47002 * 299.96996 * 3 2 1 28 28 H 0.96695 * 113.99675 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.49647 * 298.69108 * 5 2 1 30 30 H 1.09001 * 109.49565 * 178.58968 * 5 2 1 31 31 H 1.09008 * 109.58500 * 294.84796 * 6 5 2 32 32 H 1.08996 * 109.70763 * 174.49184 * 6 5 2 33 33 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 34 34 H 1.09002 * 109.58639 * 173.14032 * 19 7 6 35 35 H 1.09004 * 109.58795 * 293.56526 * 19 7 6 36 36 H 0.96698 * 113.99995 * 60.13425 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4425 0.0000 4 8 1.5627 2.1163 1.1665 5 6 2.0398 -0.7209 1.2501 6 6 1.4992 -2.1542 1.2643 7 7 1.8619 -2.8089 -0.0001 8 16 2.6650 -4.2572 -0.0001 9 8 3.3360 -4.3439 1.2495 10 8 3.3354 -4.3442 -1.2500 11 6 1.4461 -5.5296 0.0004 12 1 0.3971 -5.2724 0.0002 13 6 1.8314 -6.8534 -0.0001 14 7 3.1087 -7.1665 -0.0005 15 14 0.5392 -8.2023 0.0011 16 1 1.2078 -9.5283 0.0010 17 1 -0.3100 -8.0754 -1.2105 18 1 -0.3076 -8.0755 1.2144 19 6 1.5039 -2.1514 -1.2642 20 6 2.0395 -0.7209 -1.2501 21 1 1.6955 -0.1935 -2.1398 22 8 3.4682 -0.7494 -1.2352 23 1 -0.3634 0.5143 0.8898 24 1 -0.3634 0.5134 -0.8903 25 1 -0.3634 -1.0277 0.0005 26 1 3.1297 1.4427 0.0005 27 1 1.6767 1.9562 -0.8903 28 1 1.8476 3.0380 1.2323 29 1 1.6959 -0.1936 2.1399 30 1 3.1295 -0.7432 1.2381 31 1 0.4142 -2.1345 1.3675 32 1 1.9357 -2.7034 2.0985 33 1 3.7798 -6.4660 -0.0007 34 1 1.9456 -2.6973 -2.0979 35 1 0.4194 -2.1315 -1.3715 36 1 3.8607 -1.1925 -1.9999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = -195.722604 kcal Electronic energy + Delta-G solvation = -21782.047066 eV Core-core repulsion = 18392.407839 eV Total energy + Delta-G solvation = -3389.639227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -39.80606 -36.66446 -35.63836 -35.17372 -34.36383 -33.32546 -32.90985 -30.15371 -26.80862 -26.55482 -25.47622 -23.05762 -22.21307 -19.34067 -18.83219 -17.73483 -17.37853 -16.48177 -16.38564 -15.21284 -15.01191 -14.85529 -14.61772 -14.47227 -14.11103 -13.89001 -13.36305 -12.93862 -12.56565 -12.44019 -12.33707 -12.00213 -11.73500 -11.44048 -11.08991 -11.01257 -10.76519 -10.71377 -10.57147 -10.53442 -10.39155 -10.30431 -10.16438 -9.90915 -9.72532 -9.18521 -8.71689 -8.05512 -7.17255 -5.38868 2.09217 3.22694 3.23667 3.44953 4.06091 4.15377 4.28692 4.35977 4.70822 4.80053 4.92943 5.04697 5.22478 5.30592 5.39816 5.52720 5.59524 5.63896 5.68295 5.80283 5.86950 5.95148 5.98873 6.05107 6.11600 6.21090 6.32563 6.43077 6.65722 6.72693 7.42921 7.55685 7.61504 7.83194 8.05074 8.62591 10.19831 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.033919 B = 0.005823 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.299221 B = 4807.082331 C = 5002.730567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.090 3.910 4 O -0.570 6.570 5 C -0.112 4.112 6 C 0.122 3.878 7 N -0.996 5.996 8 S 2.696 3.304 9 O -1.009 7.009 10 O -1.013 7.013 11 C -1.087 5.087 12 H 0.101 0.899 13 C 0.089 3.911 14 N -0.845 5.845 15 Si 1.080 2.920 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.093 3.907 20 C 0.104 3.896 21 H 0.060 0.940 22 O -0.561 6.561 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.374 0.626 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.276 0.724 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 15.278 -2.044 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 C 0.012 3.988 4 O -0.375 6.375 5 C -0.151 4.151 6 C -0.004 4.004 7 N -0.832 5.832 8 S 2.798 3.202 9 O -1.000 7.000 10 O -1.003 7.003 11 C -1.221 5.221 12 H 0.119 0.881 13 C -0.129 4.129 14 N -0.474 5.474 15 Si 0.903 3.097 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.033 4.033 20 C 0.043 3.957 21 H 0.077 0.923 22 O -0.367 6.367 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.220 0.780 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.298 13.336 -1.371 14.415 hybrid contribution -0.154 1.807 -0.764 1.967 sum -5.453 15.142 -2.135 16.235 Atomic orbital electron populations 1.21906 0.93393 1.02530 1.02153 1.20452 0.95966 0.92924 0.95401 1.22162 0.97951 0.92059 0.86645 1.86466 1.77527 1.28611 1.44895 1.21785 1.01721 0.95008 0.96596 1.21325 0.99422 0.93281 0.86358 1.57686 1.76977 1.38958 1.09536 1.00921 0.74449 0.71990 0.72804 1.93399 1.74699 1.86336 1.45525 1.93375 1.74800 1.86458 1.45650 1.31568 1.11571 1.09166 1.69843 0.88051 1.25983 0.99638 0.99445 0.87856 1.70855 1.00678 1.38446 1.37420 0.83447 0.73945 0.74698 0.77630 1.19594 1.20145 1.20103 1.21875 1.00427 0.93441 0.87603 1.22007 0.81742 0.95321 0.96641 0.92256 1.86445 1.18801 1.81206 1.50252 0.91312 0.93047 0.91536 0.92785 0.94230 0.77958 0.90620 0.90919 0.92191 0.88993 0.91228 0.88654 0.91235 0.77089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.57 37.16 0.28 -1.43 16 2 C -0.05 -0.64 0.43 -154.47 -0.07 -0.70 16 3 C 0.09 1.04 5.78 37.16 0.21 1.26 16 4 O -0.57 -6.25 12.29 -35.23 -0.43 -6.69 16 5 C -0.11 -1.78 4.64 -26.61 -0.12 -1.90 16 6 C 0.12 2.20 6.01 -3.71 -0.02 2.18 16 7 N -1.00 -20.21 3.24 -113.77 -0.37 -20.58 16 8 S 2.70 71.08 4.37 -107.50 -0.47 70.61 16 9 O -1.01 -29.36 16.23 -57.17 -0.93 -30.29 16 10 O -1.01 -28.35 16.22 -57.17 -0.93 -29.28 16 11 C -1.09 -30.30 9.75 30.60 0.30 -30.00 16 12 H 0.10 2.61 7.81 -52.48 -0.41 2.20 16 13 C 0.09 2.56 5.46 -17.82 -0.10 2.46 16 14 N -0.84 -26.07 13.66 55.43 0.76 -25.31 16 15 Si 1.08 24.10 29.90 -169.99 -5.08 19.01 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 C 0.09 1.55 5.62 -3.94 -0.02 1.53 16 20 C 0.10 1.45 2.76 -26.84 -0.07 1.37 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 O -0.56 -8.58 11.90 -35.23 -0.42 -9.00 16 23 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.84 4.99 -51.93 -0.26 0.58 16 26 H 0.05 0.67 7.72 -51.93 -0.40 0.27 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.37 2.38 9.12 45.56 0.42 2.80 16 29 H 0.08 1.11 7.64 -51.93 -0.40 0.72 16 30 H 0.07 1.29 7.61 -51.93 -0.40 0.90 16 31 H 0.06 0.95 6.69 -51.92 -0.35 0.60 16 32 H 0.09 1.81 6.92 -51.93 -0.36 1.45 16 33 H 0.28 8.76 6.52 -40.82 -0.27 8.49 16 34 H 0.10 1.66 6.91 -51.93 -0.36 1.30 16 35 H 0.07 1.00 6.70 -51.93 -0.35 0.65 16 36 H 0.38 4.92 9.08 45.56 0.41 5.33 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -36.25 296.96 -6.18 -42.44 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.17 Total: 9.86 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 0.39 Total: -25.24 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.39 Total: -45.90 kcal Atomic # 8 Polarization: -72.55 SS G_CDS: -2.71 Total: -75.26 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.01 kcal Atomic # 16 Polarization: 71.08 SS G_CDS: -0.47 Total: 70.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.25 -6.18 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.284 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds