Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46188 * 2 1 4 4 O 1.42901 * 109.47156 * 59.97267 * 3 2 1 5 5 C 1.53047 * 109.45938 * 119.97252 * 2 1 3 6 6 C 1.53188 * 109.31419 * 58.64021 * 5 2 1 7 7 N 1.46927 * 108.77539 * 54.63212 * 6 5 2 8 8 S 1.65601 * 120.62705 * 126.36834 * 7 6 5 9 9 O 1.42101 * 106.40318 * 336.46540 * 8 7 6 10 10 O 1.42100 * 106.40446 * 203.54373 * 8 7 6 11 11 C 1.76202 * 107.21908 * 90.00199 * 8 7 6 12 12 H 1.08005 * 119.99646 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00219 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.46922 * 118.74238 * 306.64832 * 7 6 5 20 20 C 1.52757 * 109.00859 * 53.30354 * 19 7 6 21 21 H 1.09002 * 109.56521 * 185.55237 * 20 19 7 22 22 O 1.42903 * 109.38743 * 65.52087 * 20 19 7 23 23 H 1.09007 * 109.47163 * 300.03105 * 1 2 3 24 24 H 1.09004 * 109.47375 * 60.02826 * 1 2 3 25 25 H 1.09003 * 109.47572 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47013 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47002 * 299.96996 * 3 2 1 28 28 H 0.96695 * 113.99675 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.49647 * 298.69108 * 5 2 1 30 30 H 1.09001 * 109.49565 * 178.58968 * 5 2 1 31 31 H 1.09008 * 109.58500 * 294.84796 * 6 5 2 32 32 H 1.08996 * 109.70763 * 174.49184 * 6 5 2 33 33 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 34 34 H 1.09002 * 109.58639 * 173.14032 * 19 7 6 35 35 H 1.09004 * 109.58795 * 293.56526 * 19 7 6 36 36 H 0.96698 * 113.99995 * 60.13425 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4425 0.0000 4 8 1.5627 2.1163 1.1665 5 6 2.0398 -0.7209 1.2501 6 6 1.4992 -2.1542 1.2643 7 7 1.8619 -2.8089 -0.0001 8 16 2.6650 -4.2572 -0.0001 9 8 3.3360 -4.3439 1.2495 10 8 3.3354 -4.3442 -1.2500 11 6 1.4461 -5.5296 0.0004 12 1 0.3971 -5.2724 0.0002 13 6 1.8314 -6.8534 -0.0001 14 7 3.1087 -7.1665 -0.0005 15 14 0.5392 -8.2023 0.0011 16 1 1.2078 -9.5283 0.0010 17 1 -0.3100 -8.0754 -1.2105 18 1 -0.3076 -8.0755 1.2144 19 6 1.5039 -2.1514 -1.2642 20 6 2.0395 -0.7209 -1.2501 21 1 1.6955 -0.1935 -2.1398 22 8 3.4682 -0.7494 -1.2352 23 1 -0.3634 0.5143 0.8898 24 1 -0.3634 0.5134 -0.8903 25 1 -0.3634 -1.0277 0.0005 26 1 3.1297 1.4427 0.0005 27 1 1.6767 1.9562 -0.8903 28 1 1.8476 3.0380 1.2323 29 1 1.6959 -0.1936 2.1399 30 1 3.1295 -0.7432 1.2381 31 1 0.4142 -2.1345 1.3675 32 1 1.9357 -2.7034 2.0985 33 1 3.7798 -6.4660 -0.0007 34 1 1.9456 -2.6973 -2.0979 35 1 0.4194 -2.1315 -1.3715 36 1 3.8607 -1.1925 -1.9999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = -229.323251 kcal Electronic energy + Delta-G solvation = -21783.504099 eV Core-core repulsion = 18392.407839 eV Total energy + Delta-G solvation = -3391.096260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96832 -37.79696 -37.56719 -36.56045 -36.49395 -35.37162 -34.24836 -31.46114 -28.04915 -27.64673 -27.50019 -24.34867 -23.45933 -21.43477 -20.33057 -19.03212 -18.45250 -18.22581 -17.76076 -16.91217 -16.69772 -16.10040 -15.94830 -15.82068 -15.67729 -15.44582 -14.88580 -14.61192 -13.93866 -13.77313 -13.44831 -13.18944 -13.10300 -13.02309 -12.97597 -12.91350 -12.73198 -12.49904 -12.21386 -11.98297 -11.83658 -11.57459 -11.40399 -11.20995 -10.97428 -10.77785 -10.71574 -9.70884 -9.37795 -7.65851 0.10051 1.44533 1.48845 1.74989 2.31437 2.51657 2.57398 3.20566 3.28955 3.51615 3.65527 3.79191 3.92159 4.08431 4.15757 4.23169 4.35449 4.46847 4.52172 4.58579 4.63349 4.65625 4.78138 4.88422 4.90246 5.08868 5.13765 5.24709 5.31572 5.42270 5.51999 5.76579 5.85081 6.46967 6.77843 6.96669 7.91717 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.033919 B = 0.005823 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.299221 B = 4807.082331 C = 5002.730567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C 0.096 3.904 4 O -0.583 6.583 5 C -0.106 4.106 6 C 0.116 3.884 7 N -0.991 5.991 8 S 2.699 3.301 9 O -1.048 7.048 10 O -1.038 7.038 11 C -1.103 5.103 12 H 0.120 0.880 13 C 0.033 3.967 14 N -0.877 5.877 15 Si 1.121 2.879 16 H -0.268 1.268 17 H -0.248 1.248 18 H -0.251 1.251 19 C 0.081 3.919 20 C 0.104 3.896 21 H 0.101 0.899 22 O -0.580 6.580 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.395 0.605 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 16.840 -2.805 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 C 0.019 3.981 4 O -0.391 6.391 5 C -0.145 4.145 6 C -0.009 4.009 7 N -0.830 5.830 8 S 2.803 3.197 9 O -1.038 7.038 10 O -1.028 7.028 11 C -1.237 5.237 12 H 0.138 0.862 13 C -0.177 4.177 14 N -0.507 5.507 15 Si 0.934 3.066 16 H -0.193 1.193 17 H -0.171 1.171 18 H -0.175 1.175 19 C -0.044 4.044 20 C 0.044 3.956 21 H 0.118 0.882 22 O -0.387 6.387 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.244 0.756 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.007 14.942 -2.138 17.086 hybrid contribution 0.682 1.458 -0.508 1.688 sum -7.325 16.400 -2.645 18.155 Atomic orbital electron populations 1.21866 0.91710 1.02441 1.03439 1.20532 0.97240 0.93826 0.93516 1.22009 0.97090 0.91133 0.87901 1.86408 1.77600 1.30378 1.44722 1.21705 0.99940 0.93913 0.98916 1.21543 1.00986 0.93990 0.84431 1.57223 1.76626 1.37244 1.11904 1.00433 0.74573 0.73135 0.71568 1.93339 1.75976 1.87470 1.47025 1.93324 1.75722 1.87422 1.46346 1.31991 1.12925 1.09950 1.68789 0.86189 1.27867 1.00661 1.02964 0.86195 1.71010 1.01539 1.37615 1.40562 0.83056 0.71941 0.71718 0.79843 1.19264 1.17142 1.17539 1.22288 1.02339 0.94660 0.85135 1.22176 0.80969 0.93788 0.98676 0.88194 1.86434 1.19912 1.81293 1.51087 0.91241 0.90631 0.92220 0.94207 0.91691 0.75588 0.89442 0.93701 0.89376 0.91649 0.93469 0.89934 0.88305 0.76269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 7.57 71.98 0.54 -2.20 16 2 C -0.05 -1.23 0.43 -52.16 -0.02 -1.25 16 3 C 0.10 1.94 5.78 71.98 0.42 2.36 16 4 O -0.58 -10.99 12.29 -148.98 -1.83 -12.82 16 5 C -0.11 -3.25 4.64 30.67 0.14 -3.11 16 6 C 0.12 4.11 6.01 86.36 0.52 4.63 16 7 N -0.99 -39.95 3.24 -513.86 -1.66 -41.62 16 8 S 2.70 146.13 4.37 -56.49 -0.25 145.88 16 9 O -1.05 -63.72 16.23 -128.00 -2.08 -65.80 16 10 O -1.04 -60.04 16.22 -128.00 -2.08 -62.11 16 11 C -1.10 -61.66 9.75 67.73 0.66 -61.00 16 12 H 0.12 6.05 7.81 -2.91 -0.02 6.02 16 13 C 0.03 1.90 5.46 84.65 0.46 2.37 16 14 N -0.88 -55.61 13.66 21.45 0.29 -55.32 16 15 Si 1.12 47.03 29.90 68.60 2.05 49.08 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 18 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 19 C 0.08 2.55 5.62 86.22 0.48 3.03 16 20 C 0.10 2.65 2.76 30.53 0.08 2.73 16 21 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 22 O -0.58 -17.25 11.90 -148.98 -1.77 -19.03 16 23 H 0.07 1.40 7.68 -2.38 -0.02 1.38 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.27 4.99 -2.39 -0.01 1.26 16 26 H 0.04 0.91 7.72 -2.39 -0.02 0.90 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.39 3.80 9.12 -74.06 -0.68 3.12 16 29 H 0.09 2.46 7.64 -2.39 -0.02 2.44 16 30 H 0.04 1.61 7.61 -2.39 -0.02 1.59 16 31 H 0.09 2.63 6.69 -2.38 -0.02 2.61 16 32 H 0.07 2.65 6.92 -2.39 -0.02 2.63 16 33 H 0.25 16.93 6.52 -92.71 -0.60 16.33 16 34 H 0.08 2.81 6.91 -2.39 -0.02 2.79 16 35 H 0.10 2.53 6.70 -2.39 -0.02 2.51 16 36 H 0.39 9.91 9.08 -74.06 -0.67 9.24 16 Total: -1.00 -80.97 296.96 -4.10 -85.06 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.06 Total: 29.11 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 3.29 Total: -52.45 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -1.37 Total: -96.93 kcal Atomic # 8 Polarization: -152.00 SS G_CDS: -7.76 Total: -159.76 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.05 Total: 49.08 kcal Atomic # 16 Polarization: 146.13 SS G_CDS: -0.25 Total: 145.88 kcal Total: -80.97 -4.10 -85.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.260 kcal (2) G-P(sol) polarization free energy of solvation -80.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds