Wall clock time and date at job start Wed Apr 15 2020 11:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37710 * 119.95082 * 2 1 4 4 C 1.39777 * 119.90248 * 180.02562 * 3 2 1 5 5 C 1.47497 * 120.09591 * 179.97438 * 4 3 2 6 6 O 1.21622 * 119.99747 * 42.28556 * 5 4 3 7 7 N 1.34766 * 120.00339 * 222.29531 * 5 4 3 8 8 C 1.36901 * 120.00405 * 182.33647 * 7 5 4 9 9 H 1.08007 * 119.99557 * 349.55816 * 8 7 5 10 10 C 1.39024 * 120.00628 * 169.55554 * 8 7 5 11 11 N 1.31380 * 119.99333 * 3.53424 * 10 8 7 12 12 Si 1.86802 * 120.00339 * 183.53550 * 10 8 7 13 13 H 1.48498 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47057 * 119.99946 * 12 10 8 15 15 H 1.48501 * 109.46754 * 239.99811 * 12 10 8 16 16 C 1.46502 * 120.00041 * 2.33445 * 7 5 4 17 17 C 1.50706 * 109.47044 * 263.22253 * 16 7 5 18 18 O 1.20821 * 119.99867 * 0.02562 * 17 16 7 19 19 O 1.34231 * 119.99943 * 179.97438 * 17 16 7 20 20 C 1.39818 * 119.81509 * 359.74623 * 4 3 2 21 21 C 1.37667 * 119.90030 * 0.48510 * 20 4 3 22 22 C 1.38989 * 119.95373 * 179.97438 * 2 1 3 23 23 O 1.35716 * 119.90471 * 359.97438 * 22 2 1 24 24 H 1.09008 * 109.46697 * 270.02164 * 1 2 3 25 25 H 1.08994 * 109.47309 * 30.01709 * 1 2 3 26 26 H 1.08997 * 109.47400 * 150.02714 * 1 2 3 27 27 H 1.07999 * 120.05037 * 359.97438 * 3 2 1 28 28 H 0.97010 * 119.99663 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.47185 * 23.22255 * 16 7 5 30 30 H 1.08992 * 109.47254 * 143.22786 * 16 7 5 31 31 H 0.96700 * 117.00048 * 180.02562 * 19 17 16 32 32 H 1.07997 * 120.05088 * 180.27283 * 20 4 3 33 33 H 1.08007 * 119.94985 * 179.79476 * 21 20 4 34 34 H 0.96691 * 114.00110 * 270.01955 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1932 0.0000 4 6 3.5923 1.1920 -0.0005 5 6 4.3330 2.4675 -0.0011 6 8 3.9647 3.3848 0.7075 7 7 5.4176 2.6166 -0.7870 8 6 6.1331 3.7832 -0.7521 9 1 5.7402 4.6422 -0.2283 10 6 7.3655 3.8623 -1.3907 11 7 7.8117 2.8407 -2.0859 12 14 8.3867 5.4210 -1.2604 13 1 7.6659 6.4168 -0.4273 14 1 9.6950 5.1046 -0.6334 15 1 8.6106 5.9809 -2.6175 16 6 5.8311 1.5302 -1.6786 17 6 6.9156 0.7209 -1.0150 18 8 7.3029 1.0207 0.0895 19 8 7.4504 -0.3334 -1.6507 20 6 4.2864 -0.0217 0.0043 21 6 3.5912 -1.2099 -0.0005 22 6 2.2009 -1.2042 0.0005 23 8 1.5195 -2.3779 0.0016 24 1 -0.3633 0.0004 1.0278 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6545 2.1285 -0.0004 28 1 8.6715 2.8960 -2.5319 29 1 4.9760 0.8879 -1.8895 30 1 6.2095 1.9493 -2.6108 31 1 8.1428 -0.8220 -1.1848 32 1 5.3664 -0.0270 0.0083 33 1 4.1266 -2.1479 -0.0002 34 1 1.3221 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600077964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:11 Heat of formation + Delta-G solvation = -119.661385 kcal Electronic energy + Delta-G solvation = -22289.601019 eV Core-core repulsion = 18767.816103 eV Total energy + Delta-G solvation = -3521.784916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22515 -39.21017 -38.14291 -36.21565 -35.33403 -34.54536 -32.76037 -31.66367 -29.80480 -27.91642 -26.61817 -25.16712 -22.78277 -21.66091 -21.11018 -19.33939 -18.29827 -17.24697 -17.09513 -16.43737 -15.76780 -15.63599 -15.47405 -14.91974 -14.64286 -14.18031 -13.85611 -13.49054 -13.23093 -13.01298 -12.79958 -12.35116 -12.14701 -11.97015 -11.69016 -11.64359 -11.52405 -11.17307 -10.96667 -10.50954 -10.42391 -10.38488 -10.19606 -9.72688 -9.18388 -8.79081 -8.60511 -8.18924 -8.12310 -6.45878 -4.02422 1.20898 1.56121 3.05747 3.19763 3.26757 3.34141 3.51666 3.88704 4.01594 4.21022 4.34296 4.66726 4.96651 5.02583 5.09730 5.36280 5.51044 5.61506 5.67830 5.77236 5.85802 5.93980 6.09451 6.25184 6.45401 6.49205 6.61495 6.75636 6.86597 6.95742 7.41601 7.46263 7.70807 7.83780 8.25775 8.94485 8.99468 9.17094 9.69328 10.50798 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.006050 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.465027 B = 4627.336962 C = 5455.709766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.064 4.064 4 C -0.100 4.100 5 C 0.488 3.512 6 O -0.575 6.575 7 N -0.421 5.421 8 C -0.279 4.279 9 H 0.113 0.887 10 C 0.026 3.974 11 N -0.899 5.899 12 Si 0.944 3.056 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.131 3.869 17 C 0.497 3.503 18 O -0.520 6.520 19 O -0.530 6.530 20 C -0.094 4.094 21 C -0.144 4.144 22 C 0.103 3.897 23 O -0.497 6.497 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.133 0.867 28 H 0.273 0.727 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.390 0.610 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 -9.395 -0.228 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.103 4.103 5 C 0.277 3.723 6 O -0.459 6.459 7 N -0.139 5.139 8 C -0.406 4.406 9 H 0.131 0.869 10 C -0.173 4.173 11 N -0.543 5.543 12 Si 0.770 3.230 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.005 3.995 17 C 0.340 3.660 18 O -0.408 6.408 19 O -0.340 6.340 20 C -0.113 4.113 21 C -0.162 4.162 22 C 0.058 3.942 23 O -0.306 6.306 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.174 0.826 31 H 0.246 0.754 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.429 -8.544 -0.509 11.334 hybrid contribution 1.392 0.075 0.834 1.624 sum -6.037 -8.470 0.325 10.406 Atomic orbital electron populations 1.20650 0.90667 1.03027 1.02099 1.20081 0.96612 0.92287 1.02998 1.20984 0.92612 0.97520 0.97192 1.20281 0.94174 0.94286 1.01589 1.17825 0.83788 0.87316 0.83348 1.90638 1.69788 1.42006 1.43473 1.43378 1.23231 1.13155 1.34122 1.19969 0.99291 0.90208 1.31142 0.86936 1.25311 0.96759 0.99508 0.95725 1.69609 1.21117 1.30408 1.33171 0.85569 0.79246 0.80122 0.78059 1.19071 1.20574 1.20540 1.21398 0.92515 0.88355 0.97210 1.23703 0.82619 0.76336 0.83388 1.90633 1.61237 1.67091 1.21853 1.84558 1.53836 1.42892 1.52749 1.21568 1.00643 0.91275 0.97769 1.21250 0.93261 0.98546 1.03149 1.18357 0.89582 0.84634 1.01633 1.84729 1.76283 1.36455 1.33173 0.91522 0.91418 0.91066 0.84931 0.91611 0.90749 0.82625 0.75373 0.85260 0.85357 0.75946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.78 36.00 0.35 -0.86 16 2 C -0.12 -1.76 5.89 -104.54 -0.62 -2.38 16 3 C -0.06 -1.13 9.30 -39.20 -0.36 -1.49 16 4 C -0.10 -2.06 4.98 -104.96 -0.52 -2.58 16 5 C 0.49 12.29 7.24 -12.49 -0.09 12.20 16 6 O -0.57 -16.15 16.55 5.26 0.09 -16.06 16 7 N -0.42 -10.82 2.18 -117.29 -0.26 -11.08 16 8 C -0.28 -7.65 9.32 -15.00 -0.14 -7.79 16 9 H 0.11 3.21 7.20 -52.48 -0.38 2.83 16 10 C 0.03 0.68 5.33 -17.45 -0.09 0.58 16 11 N -0.90 -22.76 8.02 55.50 0.45 -22.31 16 12 Si 0.94 20.76 29.56 -169.99 -5.02 15.74 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.13 2.96 4.79 -5.19 -0.02 2.94 16 17 C 0.50 11.13 3.72 36.01 0.13 11.26 16 18 O -0.52 -13.46 16.30 -18.75 -0.31 -13.76 16 19 O -0.53 -9.66 13.42 -39.26 -0.53 -10.18 16 20 C -0.09 -1.76 7.56 -39.20 -0.30 -2.06 16 21 C -0.14 -2.23 9.97 -39.50 -0.39 -2.63 16 22 C 0.10 1.48 6.68 -39.01 -0.26 1.22 16 23 O -0.50 -5.83 12.52 -18.85 -0.24 -6.07 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 25 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.07 0.75 7.52 -51.93 -0.39 0.36 16 27 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.07 1.49 5.63 -51.93 -0.29 1.20 16 30 H 0.16 3.68 5.94 -51.93 -0.31 3.37 16 31 H 0.39 5.40 9.10 45.56 0.41 5.82 16 32 H 0.13 2.62 3.77 -52.49 -0.20 2.42 16 33 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.39 2.68 9.06 45.56 0.41 3.09 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -33.44 293.31 -5.27 -38.72 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -1.56 Total: 12.17 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -2.32 Total: 8.42 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.19 Total: -33.39 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.98 Total: -46.08 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.44 -5.27 -38.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.946 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds