Wall clock time and date at job start Wed Apr 15 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37710 * 119.95082 * 2 1 4 4 C 1.39777 * 119.90248 * 180.02562 * 3 2 1 5 5 C 1.47497 * 120.09591 * 179.97438 * 4 3 2 6 6 O 1.21622 * 119.99747 * 42.28556 * 5 4 3 7 7 N 1.34766 * 120.00339 * 222.29531 * 5 4 3 8 8 C 1.36901 * 120.00405 * 182.33647 * 7 5 4 9 9 H 1.08007 * 119.99557 * 349.55816 * 8 7 5 10 10 C 1.39024 * 120.00628 * 169.55554 * 8 7 5 11 11 N 1.31380 * 119.99333 * 3.53424 * 10 8 7 12 12 Si 1.86802 * 120.00339 * 183.53550 * 10 8 7 13 13 H 1.48498 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47057 * 119.99946 * 12 10 8 15 15 H 1.48501 * 109.46754 * 239.99811 * 12 10 8 16 16 C 1.46502 * 120.00041 * 2.33445 * 7 5 4 17 17 C 1.50706 * 109.47044 * 263.22253 * 16 7 5 18 18 O 1.20821 * 119.99867 * 0.02562 * 17 16 7 19 19 O 1.34231 * 119.99943 * 179.97438 * 17 16 7 20 20 C 1.39818 * 119.81509 * 359.74623 * 4 3 2 21 21 C 1.37667 * 119.90030 * 0.48510 * 20 4 3 22 22 C 1.38989 * 119.95373 * 179.97438 * 2 1 3 23 23 O 1.35716 * 119.90471 * 359.97438 * 22 2 1 24 24 H 1.09008 * 109.46697 * 270.02164 * 1 2 3 25 25 H 1.08994 * 109.47309 * 30.01709 * 1 2 3 26 26 H 1.08997 * 109.47400 * 150.02714 * 1 2 3 27 27 H 1.07999 * 120.05037 * 359.97438 * 3 2 1 28 28 H 0.97010 * 119.99663 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.47185 * 23.22255 * 16 7 5 30 30 H 1.08992 * 109.47254 * 143.22786 * 16 7 5 31 31 H 0.96700 * 117.00048 * 180.02562 * 19 17 16 32 32 H 1.07997 * 120.05088 * 180.27283 * 20 4 3 33 33 H 1.08007 * 119.94985 * 179.79476 * 21 20 4 34 34 H 0.96691 * 114.00110 * 270.01955 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1932 0.0000 4 6 3.5923 1.1920 -0.0005 5 6 4.3330 2.4675 -0.0011 6 8 3.9647 3.3848 0.7075 7 7 5.4176 2.6166 -0.7870 8 6 6.1331 3.7832 -0.7521 9 1 5.7402 4.6422 -0.2283 10 6 7.3655 3.8623 -1.3907 11 7 7.8117 2.8407 -2.0859 12 14 8.3867 5.4210 -1.2604 13 1 7.6659 6.4168 -0.4273 14 1 9.6950 5.1046 -0.6334 15 1 8.6106 5.9809 -2.6175 16 6 5.8311 1.5302 -1.6786 17 6 6.9156 0.7209 -1.0150 18 8 7.3029 1.0207 0.0895 19 8 7.4504 -0.3334 -1.6507 20 6 4.2864 -0.0217 0.0043 21 6 3.5912 -1.2099 -0.0005 22 6 2.2009 -1.2042 0.0005 23 8 1.5195 -2.3779 0.0016 24 1 -0.3633 0.0004 1.0278 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6545 2.1285 -0.0004 28 1 8.6715 2.8960 -2.5319 29 1 4.9760 0.8879 -1.8895 30 1 6.2095 1.9493 -2.6108 31 1 8.1428 -0.8220 -1.1848 32 1 5.3664 -0.0270 0.0083 33 1 4.1266 -2.1479 -0.0002 34 1 1.3221 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600077964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:06 Heat of formation + Delta-G solvation = -144.683386 kcal Electronic energy + Delta-G solvation = -22290.686054 eV Core-core repulsion = 18767.816103 eV Total energy + Delta-G solvation = -3522.869952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.83887 -40.66874 -39.83773 -37.46426 -37.11301 -36.40873 -34.17502 -33.38214 -31.18692 -29.71056 -27.82675 -26.98103 -24.27592 -22.98616 -22.80975 -21.00186 -19.43899 -19.14524 -18.84329 -18.12366 -17.43014 -17.19825 -16.84151 -16.51974 -16.15323 -15.97557 -15.27548 -15.13620 -14.80905 -14.22475 -14.07961 -13.88051 -13.75510 -13.46106 -13.22693 -12.96074 -12.83956 -12.73754 -12.71064 -12.34058 -12.18810 -12.15026 -11.63223 -11.37360 -11.07709 -10.69663 -10.09197 -9.89870 -9.50699 -8.41080 -6.06906 -0.13324 0.27541 1.29507 1.37969 1.51686 1.60676 1.85382 2.14078 2.42909 2.57402 2.88721 3.12969 3.24785 3.73211 3.81014 3.88578 4.18560 4.22757 4.37607 4.60760 4.76168 4.82083 4.86207 4.91636 5.00405 5.16484 5.25169 5.35180 5.36986 5.43543 5.75447 5.88808 5.89688 6.29718 6.85961 6.97172 7.18252 7.37426 7.76482 8.52869 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.006050 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.465027 B = 4627.336962 C = 5455.709766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.113 4.113 3 C -0.070 4.070 4 C -0.132 4.132 5 C 0.477 3.523 6 O -0.622 6.622 7 N -0.433 5.433 8 C -0.322 4.322 9 H 0.085 0.915 10 C -0.001 4.001 11 N -0.902 5.902 12 Si 1.001 2.999 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.259 1.259 16 C 0.133 3.867 17 C 0.509 3.491 18 O -0.560 6.560 19 O -0.514 6.514 20 C -0.103 4.103 21 C -0.138 4.138 22 C 0.127 3.873 23 O -0.492 6.492 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.278 0.722 29 H 0.099 0.901 30 H 0.146 0.854 31 H 0.413 0.587 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 -11.893 -0.868 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.089 4.089 4 C -0.135 4.135 5 C 0.268 3.732 6 O -0.510 6.510 7 N -0.149 5.149 8 C -0.449 4.449 9 H 0.103 0.897 10 C -0.200 4.200 11 N -0.545 5.545 12 Si 0.824 3.176 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.184 1.184 16 C 0.008 3.992 17 C 0.353 3.647 18 O -0.452 6.452 19 O -0.326 6.326 20 C -0.122 4.122 21 C -0.156 4.156 22 C 0.082 3.918 23 O -0.305 6.305 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.163 0.837 31 H 0.273 0.727 32 H 0.130 0.870 33 H 0.174 0.826 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -8.269 -11.119 -1.181 13.907 hybrid contribution 1.568 0.639 1.025 1.979 sum -6.701 -10.481 -0.156 12.441 Atomic orbital electron populations 1.20736 0.87764 1.04022 1.03643 1.20407 0.98555 0.91218 1.01173 1.21025 0.91470 0.98816 0.97563 1.19994 0.95153 0.92609 1.05743 1.18640 0.83666 0.88552 0.82349 1.90568 1.71003 1.44160 1.45312 1.43507 1.23398 1.13452 1.34575 1.19865 1.01003 0.90760 1.33276 0.89699 1.26033 0.96823 1.02385 0.94737 1.69691 1.21192 1.31142 1.32426 0.84748 0.77256 0.76827 0.78733 1.19873 1.20484 1.18370 1.21379 0.93672 0.88085 0.96044 1.23467 0.82011 0.76590 0.82598 1.90618 1.62476 1.68545 1.23533 1.84474 1.54359 1.41672 1.52087 1.21394 0.99835 0.91792 0.99154 1.21469 0.93987 0.98200 1.01980 1.18335 0.89233 0.85469 0.98784 1.84671 1.75547 1.34861 1.35460 0.89565 0.90936 0.89597 0.85424 0.91140 0.88367 0.83710 0.72718 0.87046 0.82611 0.72708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.78 71.24 0.70 -1.29 16 2 C -0.11 -3.04 5.89 -19.81 -0.12 -3.16 16 3 C -0.07 -2.44 9.30 22.52 0.21 -2.24 16 4 C -0.13 -5.56 4.98 -20.08 -0.10 -5.66 16 5 C 0.48 25.39 7.24 86.69 0.63 26.01 16 6 O -0.62 -37.44 16.55 -4.10 -0.07 -37.51 16 7 N -0.43 -23.30 2.18 -643.25 -1.40 -24.70 16 8 C -0.32 -18.59 9.32 84.09 0.78 -17.80 16 9 H 0.09 5.22 7.20 -2.91 -0.02 5.20 16 10 C 0.00 -0.06 5.33 84.95 0.45 0.40 16 11 N -0.90 -45.89 8.02 21.68 0.17 -45.71 16 12 Si 1.00 43.18 29.56 68.60 2.03 45.21 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 C 0.13 6.15 4.79 85.63 0.41 6.56 16 17 C 0.51 22.84 3.72 71.24 0.27 23.10 16 18 O -0.56 -29.53 16.30 21.98 0.36 -29.17 16 19 O -0.51 -17.91 13.42 -51.43 -0.69 -18.60 16 20 C -0.10 -3.81 7.56 22.52 0.17 -3.64 16 21 C -0.14 -3.90 9.97 22.32 0.22 -3.68 16 22 C 0.13 3.19 6.68 22.64 0.15 3.34 16 23 O -0.49 -8.98 12.52 -90.38 -1.13 -10.11 16 24 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 26 H 0.09 1.41 7.52 -2.39 -0.02 1.39 16 27 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 28 H 0.28 13.29 8.31 -92.70 -0.77 12.52 16 29 H 0.10 3.99 5.63 -2.39 -0.01 3.97 16 30 H 0.15 6.97 5.94 -2.39 -0.01 6.96 16 31 H 0.41 10.55 9.10 -74.06 -0.67 9.87 16 32 H 0.11 4.53 3.77 -2.91 -0.01 4.52 16 33 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.41 3.38 9.06 -74.06 -0.67 2.71 16 Total: -1.00 -75.99 293.31 2.88 -73.11 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.16 Total: 25.54 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 3.77 Total: 21.95 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.23 Total: -70.41 kcal Atomic # 8 Polarization: -93.86 SS G_CDS: -1.53 Total: -95.39 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -75.99 2.88 -73.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.574 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds