Wall clock time and date at job start Wed Apr 15 2020 11:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33500 * 125.83157 * 2 1 4 4 C 1.34900 * 109.89090 * 180.16023 * 3 2 1 5 5 C 1.46598 * 125.65101 * 179.85545 * 4 3 2 6 6 O 1.21611 * 119.99913 * 179.69209 * 5 4 3 7 7 O 1.34878 * 120.00237 * 359.69381 * 5 4 3 8 8 C 1.36146 * 108.69306 * 359.59178 * 4 3 2 9 9 C 1.37913 * 125.82786 * 179.71206 * 2 1 3 10 10 C 1.47419 * 126.77798 * 0.03426 * 9 2 1 11 11 O 1.21629 * 120.00067 * 322.93130 * 10 9 2 12 12 N 1.34776 * 120.00383 * 142.92321 * 10 9 2 13 13 C 1.36965 * 120.00535 * 185.47736 * 12 10 9 14 14 H 1.07991 * 120.00462 * 223.85586 * 13 12 10 15 15 C 1.38990 * 119.99447 * 43.85669 * 13 12 10 16 16 N 1.31408 * 120.00108 * 10.22755 * 15 13 12 17 17 Si 1.86799 * 119.99674 * 190.22676 * 15 13 12 18 18 H 1.48505 * 109.46760 * 89.99865 * 17 15 13 19 19 H 1.48498 * 109.46999 * 209.99626 * 17 15 13 20 20 H 1.48497 * 109.47273 * 330.00268 * 17 15 13 21 21 C 1.46505 * 119.99662 * 5.48722 * 12 10 9 22 22 C 1.52999 * 117.50089 * 182.28543 * 21 12 10 23 23 C 1.52999 * 117.50230 * 113.62280 * 21 12 10 24 24 H 1.08995 * 109.47459 * 270.29062 * 1 2 3 25 25 H 1.09003 * 109.47394 * 30.28997 * 1 2 3 26 26 H 1.09003 * 109.47319 * 150.28511 * 1 2 3 27 27 H 0.96704 * 117.00079 * 180.02562 * 7 5 4 28 28 H 1.08006 * 126.68505 * 180.26505 * 8 4 3 29 29 H 0.96995 * 119.99637 * 184.99165 * 16 15 13 30 30 H 1.09007 * 115.54791 * 327.94871 * 21 12 10 31 31 H 1.09004 * 117.49434 * 359.97438 * 22 21 12 32 32 H 1.08999 * 117.50583 * 145.01465 * 22 21 12 33 33 H 1.08997 * 117.49724 * 214.97473 * 23 21 12 34 34 H 1.09001 * 117.49806 * 0.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2885 1.0823 0.0000 4 6 3.5856 0.7118 -0.0035 5 6 4.7343 1.6226 -0.0077 6 8 5.8651 1.1751 -0.0050 7 8 4.5372 2.9569 -0.0144 8 6 3.6510 -0.6480 0.0033 9 6 2.3142 -1.1182 0.0056 10 6 1.8736 -2.5249 0.0120 11 8 0.8894 -2.8510 0.6480 12 7 2.5610 -3.4497 -0.6870 13 6 2.0900 -4.7329 -0.7732 14 1 2.7666 -5.5658 -0.6525 15 6 0.7410 -4.9630 -1.0162 16 7 -0.0437 -3.9671 -1.3615 17 14 0.0434 -6.6881 -0.8518 18 1 -0.4259 -6.9015 0.5408 19 1 -1.0967 -6.8523 -1.7891 20 1 1.0983 -7.6816 -1.1764 21 6 3.8124 -3.0824 -1.3545 22 6 4.5182 -4.1627 -2.1764 23 6 5.1035 -3.7172 -0.8340 24 1 -0.3634 0.0052 1.0276 25 1 -0.3634 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5094 27 1 5.3253 3.5172 -0.0173 28 1 4.5471 -1.2509 0.0066 29 1 -0.9975 -4.1131 -1.4605 30 1 3.8672 -2.0565 -1.7190 31 1 4.0517 -5.1469 -2.2202 32 1 5.0377 -3.8477 -3.0814 33 1 6.0078 -3.1091 -0.8565 34 1 5.0219 -4.4084 0.0048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608032529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:15 Heat of formation + Delta-G solvation = -64.980902 kcal Electronic energy + Delta-G solvation = -22113.911430 eV Core-core repulsion = 18594.497638 eV Total energy + Delta-G solvation = -3519.413793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.47913 -39.88832 -38.50056 -36.20217 -36.07249 -33.19336 -32.59885 -31.71875 -30.80323 -27.64022 -25.36632 -23.60506 -22.26216 -21.76070 -20.99612 -20.73170 -19.27043 -18.11117 -17.54361 -16.49453 -16.19116 -15.76899 -15.18276 -15.08091 -14.69870 -14.25663 -13.83591 -13.61560 -13.19658 -13.02425 -12.66316 -12.60606 -12.49018 -11.77744 -11.69625 -11.49291 -11.16320 -10.98279 -10.94981 -10.92465 -10.72542 -10.24728 -9.99742 -9.84020 -9.44698 -8.82115 -8.31765 -8.10877 -7.11790 -6.14447 -3.96697 0.98997 2.24811 2.50812 2.96100 3.28182 3.30994 3.34059 3.35502 4.14049 4.31220 4.70870 4.81329 4.93202 5.19492 5.23028 5.36546 5.58178 5.62813 5.70266 5.83470 5.85875 5.94045 5.99430 6.11176 6.22099 6.28396 6.40126 6.48485 6.58237 6.73064 6.89378 7.13899 7.55214 7.79649 8.20063 8.98449 9.08674 9.55670 10.21400 10.91433 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.006155 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.374364 B = 4547.852878 C = 5559.349868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.085 3.915 3 O -0.152 6.152 4 C -0.102 4.102 5 C 0.576 3.424 6 O -0.502 6.502 7 O -0.507 6.507 8 C -0.069 4.069 9 C -0.208 4.208 10 C 0.549 3.451 11 O -0.522 6.522 12 N -0.418 5.418 13 C -0.334 4.334 14 H 0.081 0.919 15 C 0.064 3.936 16 N -0.834 5.834 17 Si 0.915 3.085 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.069 3.931 22 C -0.173 4.173 23 C -0.209 4.209 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.414 0.586 28 H 0.169 0.831 29 H 0.265 0.735 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 9.512 -0.084 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 O -0.048 6.048 4 C -0.151 4.151 5 C 0.422 3.578 6 O -0.392 6.392 7 O -0.319 6.319 8 C -0.089 4.089 9 C -0.212 4.212 10 C 0.336 3.664 11 O -0.400 6.400 12 N -0.138 5.138 13 C -0.461 4.461 14 H 0.098 0.902 15 C -0.146 4.146 16 N -0.468 5.468 17 Si 0.742 3.258 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.037 4.037 22 C -0.211 4.211 23 C -0.248 4.248 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.133 0.867 27 H 0.273 0.727 28 H 0.187 0.813 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.984 9.308 0.132 10.559 hybrid contribution 0.379 -0.450 -0.042 0.590 sum 5.363 8.858 0.090 10.355 Atomic orbital electron populations 1.20552 0.83133 1.05023 1.04351 1.23570 0.94318 0.82607 0.96540 1.83889 1.15424 1.34751 1.70723 1.20192 0.81355 0.92272 1.21292 1.18884 0.86195 0.80430 0.72333 1.90983 1.22743 1.77878 1.47589 1.84683 1.43243 1.18113 1.85854 1.22306 0.98889 0.91728 0.96022 1.21165 0.91752 0.97004 1.11313 1.16645 0.85479 0.82153 0.82110 1.90618 1.26273 1.80023 1.43056 1.42549 1.18790 1.09402 1.43069 1.18945 0.93609 0.81979 1.51529 0.90165 1.25264 0.97094 0.98094 0.94159 1.69820 1.04744 1.32007 1.40272 0.86146 0.78620 0.82883 0.78146 1.20358 1.21165 1.19766 1.21891 0.85489 0.96228 1.00096 1.23109 1.03074 1.01305 0.93601 1.23388 0.97571 1.05277 0.98533 0.89212 0.90833 0.86713 0.72716 0.81321 0.92473 0.87656 0.87434 0.89674 0.89480 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 9.86 36.00 0.35 -0.86 16 2 C 0.08 1.58 7.41 -34.43 -0.26 1.33 16 3 O -0.15 -2.64 10.61 5.71 0.06 -2.58 16 4 C -0.10 -1.74 7.14 -36.96 -0.26 -2.00 16 5 C 0.58 8.47 8.31 34.10 0.28 8.75 16 6 O -0.50 -8.14 17.64 -19.35 -0.34 -8.48 16 7 O -0.51 -5.67 13.44 -42.59 -0.57 -6.24 16 8 C -0.07 -1.27 8.21 -39.01 -0.32 -1.59 16 9 C -0.21 -4.38 5.51 -104.96 -0.58 -4.95 16 10 C 0.55 13.89 6.45 -12.52 -0.08 13.81 16 11 O -0.52 -14.83 13.96 5.25 0.07 -14.76 16 12 N -0.42 -10.39 2.85 -108.93 -0.31 -10.70 16 13 C -0.33 -8.86 7.98 -14.98 -0.12 -8.98 16 14 H 0.08 2.06 7.15 -52.49 -0.38 1.69 16 15 C 0.06 1.73 4.65 -17.45 -0.08 1.64 16 16 N -0.83 -23.48 11.28 55.50 0.63 -22.85 16 17 Si 0.92 21.09 29.57 -169.99 -5.03 16.07 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.07 1.40 4.60 -67.93 -0.31 1.09 16 22 C -0.17 -3.13 9.80 -26.69 -0.26 -3.39 16 23 C -0.21 -3.62 9.85 -26.69 -0.26 -3.88 16 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.11 2.22 7.60 -51.93 -0.39 1.83 16 27 H 0.41 2.27 9.11 45.56 0.42 2.69 16 28 H 0.17 2.93 6.33 -52.48 -0.33 2.60 16 29 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 30 H 0.11 2.04 5.90 -51.92 -0.31 1.74 16 31 H 0.11 2.11 6.69 -51.93 -0.35 1.76 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -32.90 302.24 -5.42 -38.32 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -2.59 Total: 5.71 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.90 Total: 0.96 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.32 Total: -33.56 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.78 Total: -32.06 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.90 -5.42 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608032529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.657 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds