Wall clock time and date at job start Wed Apr 15 2020 11:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33500 * 125.83157 * 2 1 4 4 C 1.34900 * 109.89090 * 180.16023 * 3 2 1 5 5 C 1.46598 * 125.65101 * 179.85545 * 4 3 2 6 6 O 1.21611 * 119.99913 * 179.69209 * 5 4 3 7 7 O 1.34878 * 120.00237 * 359.69381 * 5 4 3 8 8 C 1.36146 * 108.69306 * 359.59178 * 4 3 2 9 9 C 1.37913 * 125.82786 * 179.71206 * 2 1 3 10 10 C 1.47419 * 126.77798 * 0.03426 * 9 2 1 11 11 O 1.21629 * 120.00067 * 322.93130 * 10 9 2 12 12 N 1.34776 * 120.00383 * 142.92321 * 10 9 2 13 13 C 1.36965 * 120.00535 * 185.47736 * 12 10 9 14 14 H 1.07991 * 120.00462 * 223.85586 * 13 12 10 15 15 C 1.38990 * 119.99447 * 43.85669 * 13 12 10 16 16 N 1.31408 * 120.00108 * 10.22755 * 15 13 12 17 17 Si 1.86799 * 119.99674 * 190.22676 * 15 13 12 18 18 H 1.48505 * 109.46760 * 89.99865 * 17 15 13 19 19 H 1.48498 * 109.46999 * 209.99626 * 17 15 13 20 20 H 1.48497 * 109.47273 * 330.00268 * 17 15 13 21 21 C 1.46505 * 119.99662 * 5.48722 * 12 10 9 22 22 C 1.52999 * 117.50089 * 182.28543 * 21 12 10 23 23 C 1.52999 * 117.50230 * 113.62280 * 21 12 10 24 24 H 1.08995 * 109.47459 * 270.29062 * 1 2 3 25 25 H 1.09003 * 109.47394 * 30.28997 * 1 2 3 26 26 H 1.09003 * 109.47319 * 150.28511 * 1 2 3 27 27 H 0.96704 * 117.00079 * 180.02562 * 7 5 4 28 28 H 1.08006 * 126.68505 * 180.26505 * 8 4 3 29 29 H 0.96995 * 119.99637 * 184.99165 * 16 15 13 30 30 H 1.09007 * 115.54791 * 327.94871 * 21 12 10 31 31 H 1.09004 * 117.49434 * 359.97438 * 22 21 12 32 32 H 1.08999 * 117.50583 * 145.01465 * 22 21 12 33 33 H 1.08997 * 117.49724 * 214.97473 * 23 21 12 34 34 H 1.09001 * 117.49806 * 0.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2885 1.0823 0.0000 4 6 3.5856 0.7118 -0.0035 5 6 4.7343 1.6226 -0.0077 6 8 5.8651 1.1751 -0.0050 7 8 4.5372 2.9569 -0.0144 8 6 3.6510 -0.6480 0.0033 9 6 2.3142 -1.1182 0.0056 10 6 1.8736 -2.5249 0.0120 11 8 0.8894 -2.8510 0.6480 12 7 2.5610 -3.4497 -0.6870 13 6 2.0900 -4.7329 -0.7732 14 1 2.7666 -5.5658 -0.6525 15 6 0.7410 -4.9630 -1.0162 16 7 -0.0437 -3.9671 -1.3615 17 14 0.0434 -6.6881 -0.8518 18 1 -0.4259 -6.9015 0.5408 19 1 -1.0967 -6.8523 -1.7891 20 1 1.0983 -7.6816 -1.1764 21 6 3.8124 -3.0824 -1.3545 22 6 4.5182 -4.1627 -2.1764 23 6 5.1035 -3.7172 -0.8340 24 1 -0.3634 0.0052 1.0276 25 1 -0.3634 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5094 27 1 5.3253 3.5172 -0.0173 28 1 4.5471 -1.2509 0.0066 29 1 -0.9975 -4.1131 -1.4605 30 1 3.8672 -2.0565 -1.7190 31 1 4.0517 -5.1469 -2.2202 32 1 5.0377 -3.8477 -3.0814 33 1 6.0078 -3.1091 -0.8565 34 1 5.0219 -4.4084 0.0048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608032529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:15 Heat of formation + Delta-G solvation = -87.299188 kcal Electronic energy + Delta-G solvation = -22114.879224 eV Core-core repulsion = 18594.497638 eV Total energy + Delta-G solvation = -3520.381586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.90010 -41.01217 -40.27017 -37.78129 -37.24809 -34.96454 -34.24084 -33.12026 -32.67086 -29.02410 -27.24244 -25.02754 -23.77892 -23.18192 -22.62932 -22.22010 -20.65869 -19.64037 -18.71812 -17.99477 -17.83154 -17.41112 -16.65297 -16.40652 -16.34824 -15.92721 -15.53166 -14.93503 -14.85419 -14.47256 -14.16391 -14.09392 -13.85216 -13.56353 -12.98524 -12.86322 -12.81275 -12.76701 -12.71822 -12.26119 -12.14000 -12.04561 -11.65873 -11.36678 -10.97080 -10.77046 -10.13243 -9.65564 -9.02739 -8.15056 -6.01939 -0.31590 0.73469 1.23179 1.41522 1.46930 1.52891 1.69715 2.10524 2.29691 2.56742 3.04060 3.10698 3.39405 3.58159 3.72633 4.02874 4.08386 4.18429 4.26323 4.42386 4.45104 4.58010 4.61453 4.65367 4.85454 4.96885 5.05269 5.16506 5.23414 5.35032 5.42749 5.50038 5.74801 6.20790 6.84922 7.01143 7.16543 7.63127 8.30848 8.89683 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.006155 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.374364 B = 4547.852878 C = 5559.349868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.090 3.910 3 O -0.142 6.142 4 C -0.095 4.095 5 C 0.589 3.411 6 O -0.515 6.515 7 O -0.496 6.496 8 C -0.072 4.072 9 C -0.241 4.241 10 C 0.539 3.461 11 O -0.570 6.570 12 N -0.433 5.433 13 C -0.347 4.347 14 H 0.082 0.918 15 C 0.014 3.986 16 N -0.866 5.866 17 Si 0.975 3.025 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.256 1.256 21 C 0.040 3.960 22 C -0.166 4.166 23 C -0.183 4.183 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.442 0.558 28 H 0.177 0.823 29 H 0.261 0.739 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.548 10.901 -0.485 13.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.034 3.966 3 O -0.037 6.037 4 C -0.144 4.144 5 C 0.434 3.566 6 O -0.407 6.407 7 O -0.310 6.310 8 C -0.092 4.092 9 C -0.246 4.246 10 C 0.329 3.671 11 O -0.451 6.451 12 N -0.152 5.152 13 C -0.475 4.475 14 H 0.099 0.901 15 C -0.192 4.192 16 N -0.501 5.501 17 Si 0.799 3.201 18 H -0.214 1.214 19 H -0.207 1.207 20 H -0.180 1.180 21 C -0.065 4.065 22 C -0.204 4.204 23 C -0.221 4.221 24 H 0.119 0.881 25 H 0.129 0.871 26 H 0.097 0.903 27 H 0.305 0.695 28 H 0.194 0.806 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.764 10.724 -0.294 12.682 hybrid contribution -0.051 -0.756 0.099 0.764 sum 6.713 9.968 -0.195 12.020 Atomic orbital electron populations 1.20533 0.81866 1.05013 1.05123 1.23803 0.95117 0.82323 0.95320 1.83914 1.15576 1.33849 1.70325 1.20556 0.81743 0.92483 1.19596 1.18437 0.84853 0.81306 0.71975 1.90990 1.22965 1.78487 1.48256 1.84619 1.45101 1.16477 1.84832 1.22259 0.97916 0.92520 0.96523 1.20878 0.93776 0.95452 1.14458 1.17207 0.84845 0.83839 0.81244 1.90558 1.28280 1.81318 1.44962 1.42751 1.20190 1.08986 1.43315 1.19189 0.93959 0.83120 1.51186 0.90061 1.26093 0.97571 1.01485 0.94081 1.69932 1.04570 1.33798 1.41799 0.85231 0.78303 0.79196 0.77327 1.21433 1.20684 1.17973 1.22080 0.84767 0.97417 1.02278 1.23177 1.02365 0.99525 0.95286 1.23392 0.96990 1.04188 0.97572 0.88054 0.87074 0.90252 0.69485 0.80582 0.92926 0.86794 0.89375 0.86516 0.86024 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 9.86 71.23 0.70 -1.56 16 2 C 0.09 3.33 7.41 25.61 0.19 3.52 16 3 O -0.14 -4.64 10.61 -0.55 -0.01 -4.65 16 4 C -0.09 -3.02 7.14 23.97 0.17 -2.85 16 5 C 0.59 15.47 8.31 70.00 0.58 16.05 16 6 O -0.52 -15.16 17.64 19.47 0.34 -14.82 16 7 O -0.50 -9.11 13.44 -56.38 -0.76 -9.86 16 8 C -0.07 -2.58 8.21 22.64 0.19 -2.39 16 9 C -0.24 -10.26 5.51 -20.08 -0.11 -10.37 16 10 C 0.54 28.26 6.45 86.66 0.56 28.82 16 11 O -0.57 -33.93 13.96 -4.12 -0.06 -33.99 16 12 N -0.43 -22.03 2.85 -616.78 -1.76 -23.79 16 13 C -0.35 -18.91 7.98 84.07 0.67 -18.24 16 14 H 0.08 4.26 7.15 -2.92 -0.02 4.24 16 15 C 0.01 0.77 4.65 84.94 0.39 1.16 16 16 N -0.87 -50.64 11.28 21.67 0.24 -50.39 16 17 Si 0.97 44.33 29.57 68.60 2.03 46.36 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 C 0.04 1.59 4.60 44.99 0.21 1.80 16 22 C -0.17 -5.76 9.80 30.62 0.30 -5.46 16 23 C -0.18 -6.00 9.85 30.62 0.30 -5.70 16 24 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.08 3.22 7.60 -2.39 -0.02 3.20 16 27 H 0.44 2.89 9.11 -74.05 -0.67 2.22 16 28 H 0.18 5.88 6.33 -2.91 -0.02 5.86 16 29 H 0.26 14.70 8.32 -92.71 -0.77 13.93 16 30 H 0.11 4.33 5.90 -2.38 -0.01 4.32 16 31 H 0.09 3.42 6.69 -2.39 -0.02 3.40 16 32 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -73.49 302.24 4.68 -68.81 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.49 Total: 17.56 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.15 Total: 4.78 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.51 Total: -74.19 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -0.48 Total: -63.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.49 4.68 -68.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608032529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.488 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds