Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.49617 * 2 1 4 4 O 1.42903 * 109.46929 * 59.93640 * 3 2 1 5 5 C 1.52761 * 109.36018 * 120.09719 * 2 1 3 6 6 N 1.46918 * 109.00999 * 65.50216 * 5 2 1 7 7 S 1.65601 * 120.62738 * 233.58338 * 6 5 2 8 8 O 1.42108 * 106.40271 * 156.17833 * 7 6 5 9 9 O 1.42098 * 106.40745 * 23.26048 * 7 6 5 10 10 C 1.76201 * 107.21953 * 269.71819 * 7 6 5 11 11 H 1.08002 * 120.00153 * 359.97438 * 10 7 6 12 12 C 1.37884 * 120.00146 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99707 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 119.99956 * 180.27487 * 12 10 7 15 15 H 1.48497 * 109.47172 * 179.72730 * 14 12 10 16 16 H 1.48506 * 109.47132 * 299.72429 * 14 12 10 17 17 H 1.48501 * 109.47173 * 59.72550 * 14 12 10 18 18 C 1.46925 * 118.74356 * 53.30510 * 6 5 2 19 19 C 1.53188 * 108.77463 * 306.65110 * 18 6 5 20 20 C 1.53032 * 109.31626 * 54.62765 * 19 18 6 21 21 H 1.09005 * 109.46037 * 178.61572 * 20 19 18 22 22 O 1.42904 * 109.46033 * 58.64404 * 20 19 18 23 23 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47142 * 300.05761 * 1 2 3 25 25 H 1.08996 * 109.47600 * 60.06477 * 1 2 3 26 26 H 1.09000 * 109.47001 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47429 * 299.93827 * 3 2 1 28 28 H 0.96703 * 113.99996 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.51222 * 305.61703 * 5 2 1 30 30 H 1.09004 * 109.43313 * 185.34046 * 5 2 1 31 31 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.58424 * 66.43222 * 18 6 5 33 33 H 1.09000 * 109.58912 * 186.71233 * 18 6 5 34 34 H 1.09001 * 109.49700 * 174.58888 * 19 18 6 35 35 H 1.09001 * 109.49266 * 294.67881 * 19 18 6 36 36 H 0.96698 * 113.99657 * 59.99874 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 8 1.5633 2.1165 1.1661 5 6 2.0364 -0.7227 1.2469 6 7 1.6516 -2.1385 1.1689 7 16 0.8191 -2.8560 2.4076 8 8 0.1330 -3.9641 1.8412 9 8 0.1604 -1.8095 3.1077 10 6 2.0117 -3.5245 3.5192 11 1 3.0656 -3.4155 3.3100 12 6 1.5994 -4.1878 4.6555 13 7 0.3160 -4.3219 4.9094 14 14 2.8638 -4.8899 5.8378 15 1 2.1683 -5.5440 6.9751 16 1 3.7024 -5.8898 5.1292 17 1 3.7257 -3.7939 6.3488 18 6 2.0140 -2.9040 -0.0317 19 6 1.5030 -2.1554 -1.2666 20 6 2.0407 -0.7227 -1.2485 21 1 1.6987 -0.1952 -2.1390 22 8 3.4694 -0.7506 -1.2311 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5147 0.8895 25 1 -0.3634 0.5128 -0.8905 26 1 3.1306 1.4418 0.0005 27 1 1.6784 1.9560 -0.8905 28 1 1.8493 3.0379 1.2324 29 1 1.5926 -0.2718 2.1345 30 1 3.1222 -0.6414 1.2974 31 1 0.0259 -4.7889 5.7086 32 1 3.0980 -3.0042 -0.0877 33 1 1.5575 -3.8928 0.0138 34 1 1.8480 -2.6622 -2.1679 35 1 0.4133 -2.1351 -1.2547 36 1 3.8634 -1.1938 -1.9949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = -192.063842 kcal Electronic energy + Delta-G solvation = -21881.610760 eV Core-core repulsion = 18492.130189 eV Total energy + Delta-G solvation = -3389.480571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.69720 -36.54494 -35.24008 -35.20385 -33.86896 -33.02470 -32.60967 -30.66490 -26.52437 -26.05002 -25.61804 -23.90280 -21.74393 -18.75962 -18.43657 -17.43516 -17.15288 -16.78783 -16.19188 -15.25673 -15.10402 -14.66836 -14.47940 -14.26463 -14.03314 -13.71621 -13.18263 -12.81645 -12.34667 -12.26582 -11.96794 -11.80546 -11.54133 -11.28487 -11.15808 -11.12905 -10.83090 -10.73434 -10.56812 -10.33597 -10.19904 -10.14328 -9.89819 -9.72308 -9.62601 -9.18069 -8.82721 -8.04234 -6.63284 -5.24911 2.35341 3.12690 3.16325 3.22773 4.11003 4.20723 4.30283 4.62969 4.69787 4.91607 4.99933 5.19627 5.21596 5.40167 5.49952 5.61573 5.70678 5.81050 5.85823 5.91330 6.02189 6.11158 6.21373 6.27624 6.32510 6.44882 6.56889 6.59514 6.72080 6.97871 7.39035 7.69317 7.69785 7.78459 8.04774 8.95297 10.30090 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.006606 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.898079 B = 4237.301186 C = 4411.738733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C 0.092 3.908 4 O -0.564 6.564 5 C 0.145 3.855 6 N -1.009 6.009 7 S 2.715 3.285 8 O -1.007 7.007 9 O -1.000 7.000 10 C -1.022 5.022 11 H 0.101 0.899 12 C 0.132 3.868 13 N -0.847 5.847 14 Si 0.919 3.081 15 H -0.276 1.276 16 H -0.264 1.264 17 H -0.264 1.264 18 C 0.129 3.871 19 C -0.167 4.167 20 C 0.121 3.879 21 H 0.051 0.949 22 O -0.560 6.560 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.374 0.626 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.291 0.709 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.474 8.383 -12.562 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C 0.014 3.986 4 O -0.369 6.369 5 C 0.019 3.981 6 N -0.844 5.844 7 S 2.817 3.183 8 O -0.998 6.998 9 O -0.990 6.990 10 C -1.155 5.155 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.477 5.477 14 Si 0.743 3.257 15 H -0.201 1.201 16 H -0.189 1.189 17 H -0.188 1.188 18 C 0.002 3.998 19 C -0.206 4.206 20 C 0.062 3.938 21 H 0.069 0.931 22 O -0.365 6.365 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.220 0.780 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.990 8.020 -11.708 14.742 hybrid contribution 1.612 -0.295 0.032 1.639 sum 5.603 7.724 -11.676 15.079 Atomic orbital electron populations 1.21842 0.93015 1.02466 1.02356 1.20794 0.96681 0.93243 0.95861 1.22086 0.97730 0.91764 0.87040 1.86582 1.77259 1.28579 1.44456 1.21023 0.99456 0.80293 0.97352 1.58114 1.75889 1.17895 1.32501 1.00466 0.73843 0.72383 0.71638 1.93337 1.73589 1.53643 1.79192 1.93356 1.74483 1.58711 1.72486 1.30652 1.10329 1.51597 1.22898 0.88068 1.24755 0.95971 0.91322 0.96460 1.69895 1.14750 1.35955 1.27126 0.86222 0.80823 0.79546 0.79087 1.20111 1.18897 1.18823 1.21089 0.99861 0.95034 0.83800 1.22633 1.02622 0.96307 0.99085 1.21651 0.80706 0.95030 0.96434 0.93073 1.86536 1.19361 1.81268 1.49354 0.92145 0.90512 0.93258 0.92765 0.94196 0.77984 0.88319 0.92013 0.89905 0.92006 0.89101 0.91038 0.90184 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.83 37.16 0.29 -1.97 16 2 C -0.06 -0.99 0.43 -154.61 -0.07 -1.05 16 3 C 0.09 1.19 5.79 37.16 0.22 1.41 16 4 O -0.56 -7.71 12.42 -35.23 -0.44 -8.15 16 5 C 0.14 2.80 4.65 -3.94 -0.02 2.78 16 6 N -1.01 -21.48 2.74 -113.77 -0.31 -21.79 16 7 S 2.72 74.73 5.01 -107.50 -0.54 74.19 16 8 O -1.01 -29.87 16.61 -57.17 -0.95 -30.82 16 9 O -1.00 -30.05 16.60 -57.17 -0.95 -31.00 16 10 C -1.02 -29.33 9.75 30.60 0.30 -29.03 16 11 H 0.10 2.69 7.81 -52.49 -0.41 2.28 16 12 C 0.13 3.82 5.46 -17.82 -0.10 3.73 16 13 N -0.85 -25.63 13.19 55.43 0.73 -24.90 16 14 Si 0.92 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 18 C 0.13 2.26 6.24 -3.71 -0.02 2.23 16 19 C -0.17 -2.28 5.46 -26.62 -0.15 -2.42 16 20 C 0.12 1.54 2.74 -26.69 -0.07 1.46 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 O -0.56 -6.66 11.43 -35.23 -0.40 -7.06 16 23 H 0.06 1.07 5.97 -51.93 -0.31 0.76 16 24 H 0.08 1.38 7.68 -51.93 -0.40 0.98 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.68 7.72 -51.93 -0.40 0.28 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.37 3.13 9.12 45.56 0.42 3.54 16 29 H 0.10 2.15 6.63 -51.93 -0.34 1.81 16 30 H 0.06 1.14 7.81 -51.93 -0.41 0.74 16 31 H 0.29 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.06 0.98 7.81 -51.92 -0.41 0.58 16 33 H 0.09 1.71 6.92 -51.93 -0.36 1.35 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.15 6.33 -51.93 -0.33 0.82 16 36 H 0.37 2.79 9.08 45.56 0.41 3.21 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -37.37 300.97 -6.32 -43.69 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -3.36 Total: 7.95 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 0.38 Total: -22.86 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.42 Total: -46.69 kcal Atomic # 8 Polarization: -74.29 SS G_CDS: -2.74 Total: -77.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 74.73 SS G_CDS: -0.54 Total: 74.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.37 -6.32 -43.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.372 kcal (2) G-P(sol) polarization free energy of solvation -37.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds