Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.49617 * 2 1 4 4 O 1.42903 * 109.46929 * 59.93640 * 3 2 1 5 5 C 1.52761 * 109.36018 * 120.09719 * 2 1 3 6 6 N 1.46918 * 109.00999 * 65.50216 * 5 2 1 7 7 S 1.65601 * 120.62738 * 233.58338 * 6 5 2 8 8 O 1.42108 * 106.40271 * 156.17833 * 7 6 5 9 9 O 1.42098 * 106.40745 * 23.26048 * 7 6 5 10 10 C 1.76201 * 107.21953 * 269.71819 * 7 6 5 11 11 H 1.08002 * 120.00153 * 359.97438 * 10 7 6 12 12 C 1.37884 * 120.00146 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99707 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 119.99956 * 180.27487 * 12 10 7 15 15 H 1.48497 * 109.47172 * 179.72730 * 14 12 10 16 16 H 1.48506 * 109.47132 * 299.72429 * 14 12 10 17 17 H 1.48501 * 109.47173 * 59.72550 * 14 12 10 18 18 C 1.46925 * 118.74356 * 53.30510 * 6 5 2 19 19 C 1.53188 * 108.77463 * 306.65110 * 18 6 5 20 20 C 1.53032 * 109.31626 * 54.62765 * 19 18 6 21 21 H 1.09005 * 109.46037 * 178.61572 * 20 19 18 22 22 O 1.42904 * 109.46033 * 58.64404 * 20 19 18 23 23 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47142 * 300.05761 * 1 2 3 25 25 H 1.08996 * 109.47600 * 60.06477 * 1 2 3 26 26 H 1.09000 * 109.47001 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47429 * 299.93827 * 3 2 1 28 28 H 0.96703 * 113.99996 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.51222 * 305.61703 * 5 2 1 30 30 H 1.09004 * 109.43313 * 185.34046 * 5 2 1 31 31 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.58424 * 66.43222 * 18 6 5 33 33 H 1.09000 * 109.58912 * 186.71233 * 18 6 5 34 34 H 1.09001 * 109.49700 * 174.58888 * 19 18 6 35 35 H 1.09001 * 109.49266 * 294.67881 * 19 18 6 36 36 H 0.96698 * 113.99657 * 59.99874 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 8 1.5633 2.1165 1.1661 5 6 2.0364 -0.7227 1.2469 6 7 1.6516 -2.1385 1.1689 7 16 0.8191 -2.8560 2.4076 8 8 0.1330 -3.9641 1.8412 9 8 0.1604 -1.8095 3.1077 10 6 2.0117 -3.5245 3.5192 11 1 3.0656 -3.4155 3.3100 12 6 1.5994 -4.1878 4.6555 13 7 0.3160 -4.3219 4.9094 14 14 2.8638 -4.8899 5.8378 15 1 2.1683 -5.5440 6.9751 16 1 3.7024 -5.8898 5.1292 17 1 3.7257 -3.7939 6.3488 18 6 2.0140 -2.9040 -0.0317 19 6 1.5030 -2.1554 -1.2666 20 6 2.0407 -0.7227 -1.2485 21 1 1.6987 -0.1952 -2.1390 22 8 3.4694 -0.7506 -1.2311 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5147 0.8895 25 1 -0.3634 0.5128 -0.8905 26 1 3.1306 1.4418 0.0005 27 1 1.6784 1.9560 -0.8905 28 1 1.8493 3.0379 1.2324 29 1 1.5926 -0.2718 2.1345 30 1 3.1222 -0.6414 1.2974 31 1 0.0259 -4.7889 5.7086 32 1 3.0980 -3.0042 -0.0877 33 1 1.5575 -3.8928 0.0138 34 1 1.8480 -2.6622 -2.1679 35 1 0.4133 -2.1351 -1.2547 36 1 3.8634 -1.1938 -1.9949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = -227.159825 kcal Electronic energy + Delta-G solvation = -21883.132636 eV Core-core repulsion = 18492.130189 eV Total energy + Delta-G solvation = -3391.002447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87236 -37.62787 -37.38872 -36.43557 -36.13558 -35.19397 -33.91462 -31.93047 -28.28530 -27.74914 -26.81847 -25.27914 -22.95295 -20.82068 -19.82145 -18.99432 -18.42130 -18.19566 -17.76134 -17.05743 -16.73678 -16.06965 -15.85868 -15.78464 -15.41085 -15.28549 -14.81553 -14.08190 -13.95191 -13.64220 -13.49708 -13.39592 -13.08390 -13.02992 -12.92347 -12.52613 -12.48643 -12.42142 -12.34216 -12.22878 -11.98675 -11.50380 -11.28279 -11.26226 -10.97516 -10.83539 -10.66440 -9.66706 -8.76776 -7.52231 0.30602 1.29490 1.32702 1.45806 2.18075 2.54043 2.81803 3.25763 3.38828 3.73965 3.82444 3.89311 3.99343 4.15467 4.26864 4.35388 4.41948 4.47040 4.60186 4.64523 4.75470 4.82899 4.87808 4.90230 4.94074 5.04945 5.18746 5.19276 5.26289 5.43801 5.45930 5.86319 6.02068 6.74074 7.04913 7.06235 8.17903 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.006606 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.898079 B = 4237.301186 C = 4411.738733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C 0.096 3.904 4 O -0.593 6.593 5 C 0.143 3.857 6 N -1.004 6.004 7 S 2.717 3.283 8 O -1.041 7.041 9 O -1.040 7.040 10 C -1.048 5.048 11 H 0.114 0.886 12 C 0.068 3.932 13 N -0.895 5.895 14 Si 0.990 3.010 15 H -0.259 1.259 16 H -0.248 1.248 17 H -0.251 1.251 18 C 0.116 3.884 19 C -0.164 4.164 20 C 0.131 3.869 21 H 0.091 0.909 22 O -0.570 6.570 23 H 0.036 0.964 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.395 0.605 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.300 0.700 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 8.995 -14.467 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C 0.018 3.982 4 O -0.401 6.401 5 C 0.017 3.983 6 N -0.843 5.843 7 S 2.820 3.180 8 O -1.031 7.031 9 O -1.030 7.030 10 C -1.181 5.181 11 H 0.133 0.867 12 C -0.145 4.145 13 N -0.527 5.527 14 Si 0.807 3.193 15 H -0.183 1.183 16 H -0.171 1.171 17 H -0.175 1.175 18 C -0.009 4.009 19 C -0.203 4.203 20 C 0.072 3.928 21 H 0.108 0.892 22 O -0.379 6.379 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.245 0.755 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.279 8.644 -13.644 17.329 hybrid contribution 0.915 -0.439 0.563 1.161 sum 7.194 8.206 -13.080 17.035 Atomic orbital electron populations 1.21807 0.94103 1.00983 1.02682 1.20891 0.95960 0.95056 0.95248 1.22093 0.98008 0.90175 0.87905 1.86550 1.77784 1.30515 1.45284 1.21121 0.99600 0.79088 0.98457 1.57597 1.75504 1.18919 1.32234 0.99988 0.74167 0.71669 0.72188 1.93276 1.74955 1.55041 1.79807 1.93293 1.75988 1.59538 1.74157 1.31044 1.11183 1.51996 1.23860 0.86734 1.26081 0.98427 0.91397 0.98571 1.69989 1.17186 1.37116 1.28365 0.85177 0.77910 0.79384 0.76799 1.18315 1.17129 1.17508 1.21432 1.01106 0.94350 0.83973 1.22674 1.02003 0.97251 0.98393 1.21512 0.81347 0.93908 0.95992 0.89161 1.86491 1.18574 1.81693 1.51126 0.94531 0.93547 0.89525 0.92105 0.90961 0.75522 0.92040 0.91242 0.89032 0.89964 0.91223 0.86708 0.91380 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 7.83 71.98 0.56 -3.86 16 2 C -0.07 -2.03 0.43 -52.25 -0.02 -2.05 16 3 C 0.10 2.22 5.79 71.98 0.42 2.64 16 4 O -0.59 -15.65 12.42 -148.98 -1.85 -17.50 16 5 C 0.14 5.57 4.65 86.22 0.40 5.97 16 6 N -1.00 -43.63 2.74 -513.86 -1.41 -45.03 16 7 S 2.72 156.60 5.01 -56.49 -0.28 156.32 16 8 O -1.04 -64.81 16.61 -128.00 -2.13 -66.94 16 9 O -1.04 -66.35 16.60 -128.00 -2.12 -68.47 16 10 C -1.05 -61.70 9.75 67.74 0.66 -61.04 16 11 H 0.11 6.17 7.81 -2.91 -0.02 6.15 16 12 C 0.07 3.97 5.46 84.66 0.46 4.43 16 13 N -0.90 -55.86 13.19 21.45 0.28 -55.58 16 14 Si 0.99 43.15 29.54 68.60 2.03 45.18 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 16 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 17 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 18 C 0.12 4.00 6.24 86.36 0.54 4.54 16 19 C -0.16 -4.02 5.46 30.67 0.17 -3.85 16 20 C 0.13 2.83 2.74 30.62 0.08 2.91 16 21 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 22 O -0.57 -11.03 11.43 -148.98 -1.70 -12.73 16 23 H 0.04 1.31 5.97 -2.39 -0.01 1.30 16 24 H 0.05 1.73 7.68 -2.39 -0.02 1.71 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.33 7.72 -2.39 -0.02 1.31 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.40 6.04 9.12 -74.06 -0.68 5.36 16 29 H 0.06 2.83 6.63 -2.39 -0.02 2.82 16 30 H 0.07 2.55 7.81 -2.39 -0.02 2.53 16 31 H 0.30 16.73 8.31 -92.70 -0.77 15.96 16 32 H 0.08 2.47 7.81 -2.38 -0.02 2.45 16 33 H 0.07 2.67 6.92 -2.39 -0.02 2.65 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.86 6.33 -2.39 -0.02 1.84 16 36 H 0.40 3.84 9.08 -74.06 -0.67 3.16 16 Total: -1.00 -86.06 300.97 -4.15 -90.21 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.23 Total: 24.87 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.27 Total: -50.31 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -1.12 Total: -100.61 kcal Atomic # 8 Polarization: -157.85 SS G_CDS: -7.80 Total: -165.65 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 156.60 SS G_CDS: -0.28 Total: 156.32 kcal Total: -86.06 -4.15 -90.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.950 kcal (2) G-P(sol) polarization free energy of solvation -86.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds