Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91750 * 2 1 4 4 C 1.31788 * 117.12373 * 179.75164 * 3 2 1 5 5 C 1.33632 * 114.50028 * 0.52192 * 4 3 2 6 6 C 1.50702 * 126.03801 * 179.78861 * 5 4 3 7 7 N 1.46497 * 109.47236 * 89.71784 * 6 5 4 8 8 C 1.35313 * 125.86667 * 125.29282 * 7 6 5 9 9 C 1.35349 * 106.17218 * 180.18574 * 8 7 6 10 10 C 1.50697 * 126.75364 * 179.85517 * 9 8 7 11 11 N 1.46499 * 109.47276 * 94.71254 * 10 9 8 12 12 C 1.36935 * 119.99938 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 10 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 10 15 15 N 1.31614 * 119.99892 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99858 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99644 * 16 14 12 18 18 H 1.48494 * 109.46800 * 209.99692 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99394 * 16 14 12 20 20 N 1.33774 * 106.49914 * 359.59715 * 9 8 7 21 21 N 1.28635 * 108.88067 * 0.25663 * 20 9 8 22 22 S 1.70976 * 124.91628 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47031 * 269.95388 * 1 2 3 24 24 H 1.09004 * 109.47343 * 29.95224 * 1 2 3 25 25 H 1.08994 * 109.47294 * 149.95451 * 1 2 3 26 26 H 1.08000 * 122.74730 * 180.33519 * 4 3 2 27 27 H 1.08997 * 109.46644 * 329.71538 * 6 5 4 28 28 H 1.09004 * 109.46850 * 209.72061 * 6 5 4 29 29 H 1.08001 * 126.91913 * 0.04070 * 8 7 6 30 30 H 1.09004 * 109.47205 * 334.71228 * 10 9 8 31 31 H 1.09005 * 109.47240 * 214.71438 * 10 9 8 32 32 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 33 33 H 0.97005 * 119.99715 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0051 5 6 3.9354 -0.4006 -0.0015 6 6 5.3575 -0.8994 -0.0024 7 7 5.8188 -1.0622 1.3785 8 6 6.3358 -2.1924 1.9136 9 6 6.6220 -1.9018 3.2042 10 6 7.2162 -2.8343 4.2281 11 7 8.6696 -2.6546 4.2671 12 6 9.4288 -3.4008 5.1284 13 1 8.9558 -4.1186 5.7822 14 6 10.8061 -3.2310 5.1650 15 7 11.5357 -3.9478 5.9933 16 14 11.6236 -1.9840 4.0397 17 1 11.6925 -0.6687 4.7256 18 1 12.9967 -2.4420 3.7082 19 1 10.8313 -1.8502 2.7908 20 7 6.2791 -0.6223 3.3905 21 7 5.8065 -0.1534 2.2898 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3634 0.8904 -0.5131 25 1 -0.3633 -0.8895 -0.5145 26 1 4.2532 1.7000 0.0109 27 1 5.9946 -0.1794 -0.5159 28 1 5.4055 -1.8591 -0.5171 29 1 6.4872 -3.1371 1.4125 30 1 6.9846 -3.8648 3.9588 31 1 6.7961 -2.6120 5.2091 32 1 9.0941 -2.0071 3.6828 33 1 12.4981 -3.8288 6.0191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330747585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = 164.446359 kcal Electronic energy + Delta-G solvation = -18232.807480 eV Core-core repulsion = 15230.680773 eV Total energy + Delta-G solvation = -3002.126707 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.09214 -40.12408 -35.80033 -34.71043 -32.53976 -31.89124 -30.36693 -29.90062 -26.41828 -26.11013 -24.16019 -22.43262 -21.92489 -20.87781 -19.87973 -18.44242 -17.85184 -17.12304 -16.61240 -15.33906 -15.27016 -14.72314 -14.53679 -14.35104 -14.12661 -13.80544 -13.44732 -13.05180 -12.92220 -12.72557 -12.66757 -12.13844 -11.75417 -11.55729 -11.10568 -10.86755 -10.58039 -10.16626 -10.10588 -9.97879 -9.77572 -9.58176 -9.27022 -9.00380 -8.88678 -7.22432 -5.74894 -3.10494 0.11509 0.82089 1.24409 1.70142 2.17762 2.64317 2.77291 3.40372 3.45660 3.48547 3.67704 4.02784 4.20471 4.58676 4.62032 4.62535 4.74203 4.93695 4.97899 5.09223 5.18787 5.35916 5.37711 5.56453 5.71057 5.73637 5.74219 6.26545 6.56704 6.60185 6.68390 7.28015 7.99694 8.43853 8.71196 9.21955 9.94534 10.14722 11.43253 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.043369 B = 0.003331 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.463748 B = 8402.961912 C = 8633.551052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.058 3.942 3 N -0.478 5.478 4 C 0.089 3.911 5 C -0.265 4.265 6 C 0.203 3.797 7 N -0.301 5.301 8 C -0.043 4.043 9 C -0.011 4.011 10 C 0.238 3.762 11 N -0.750 5.750 12 C -0.243 4.243 13 H 0.093 0.907 14 C 0.007 3.993 15 N -0.933 5.933 16 Si 0.885 3.115 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.280 1.280 20 N -0.254 5.254 21 N -0.087 5.087 22 S 0.140 5.860 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.181 0.819 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.191 0.809 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.362 0.638 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.116 4.900 -18.942 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.219 4.219 3 N -0.193 5.193 4 C -0.065 4.065 5 C -0.387 4.387 6 C 0.080 3.920 7 N -0.096 5.096 8 C -0.194 4.194 9 C -0.149 4.149 10 C 0.109 3.891 11 N -0.396 5.396 12 C -0.373 4.373 13 H 0.111 0.889 14 C -0.189 4.189 15 N -0.581 5.581 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.206 1.206 20 N -0.121 5.121 21 N -0.066 5.066 22 S 0.396 5.604 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.101 0.899 26 H 0.198 0.802 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.208 0.792 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.909 5.620 -18.451 29.947 hybrid contribution 1.644 0.523 -1.158 2.078 sum -21.265 6.143 -19.609 29.571 Atomic orbital electron populations 1.20512 0.84874 1.04436 1.04302 1.27216 1.02079 0.91022 1.01620 1.66371 1.04752 1.31427 1.16710 1.21814 0.91145 0.95800 0.97723 1.25708 0.98718 0.97105 1.17169 1.20102 0.89059 1.04618 0.78230 1.47376 1.41957 1.08970 1.11287 1.23484 1.06208 0.93803 0.95867 1.22544 1.03822 0.93583 0.94914 1.18913 0.84459 0.92656 0.93038 1.42654 1.01060 1.48018 1.47845 1.19045 0.89092 1.15510 1.13647 0.88884 1.24633 0.96028 0.99241 0.99019 1.69698 1.05424 1.43203 1.39769 0.86544 0.78843 0.82103 0.81007 1.20956 1.21723 1.20604 1.75133 1.12364 1.09263 1.15373 1.78274 1.19349 1.16074 0.92915 1.84028 0.97057 1.11834 1.67523 0.89189 0.88958 0.89876 0.80249 0.86333 0.86468 0.79187 0.93612 0.93474 0.80492 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.00 0.38 -0.05 16 2 C 0.06 0.51 7.39 -13.46 -0.10 0.41 16 3 N -0.48 -5.22 10.54 -11.86 -0.13 -5.34 16 4 C 0.09 0.90 11.25 -19.18 -0.22 0.68 16 5 C -0.27 -2.43 5.97 -35.92 -0.21 -2.64 16 6 C 0.20 1.67 6.99 -5.19 -0.04 1.63 16 7 N -0.30 -3.95 3.43 -62.44 -0.21 -4.17 16 8 C -0.04 -0.61 11.50 -17.05 -0.20 -0.80 16 9 C -0.01 -0.20 6.61 -82.78 -0.55 -0.75 16 10 C 0.24 4.82 6.82 -5.20 -0.04 4.79 16 11 N -0.75 -18.57 5.40 -61.08 -0.33 -18.90 16 12 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 13 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 14 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 15 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 16 Si 0.88 22.85 27.74 -169.99 -4.71 18.13 16 17 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 18 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 19 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 20 N -0.25 -4.99 12.41 33.29 0.41 -4.58 16 21 N -0.09 -1.47 12.92 60.35 0.78 -0.69 16 22 S 0.14 1.13 23.18 -107.50 -2.49 -1.36 16 23 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.12 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.36 9.05 5.52 -40.82 -0.23 8.83 16 33 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -36.54 308.21 -6.10 -42.64 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.62 Total: 2.20 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.22 Total: -3.78 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 1.30 Total: -62.48 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.54 -6.10 -42.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330747585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.085 kcal (2) G-P(sol) polarization free energy of solvation -36.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds