Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91750 * 2 1 4 4 C 1.31788 * 117.12373 * 179.75164 * 3 2 1 5 5 C 1.33632 * 114.50028 * 0.52192 * 4 3 2 6 6 C 1.50702 * 126.03801 * 179.78861 * 5 4 3 7 7 N 1.46497 * 109.47236 * 89.71784 * 6 5 4 8 8 C 1.35313 * 125.86667 * 125.29282 * 7 6 5 9 9 C 1.35349 * 106.17218 * 180.18574 * 8 7 6 10 10 C 1.50697 * 126.75364 * 179.85517 * 9 8 7 11 11 N 1.46499 * 109.47276 * 94.71254 * 10 9 8 12 12 C 1.36935 * 119.99938 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 10 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 10 15 15 N 1.31614 * 119.99892 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99858 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99644 * 16 14 12 18 18 H 1.48494 * 109.46800 * 209.99692 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99394 * 16 14 12 20 20 N 1.33774 * 106.49914 * 359.59715 * 9 8 7 21 21 N 1.28635 * 108.88067 * 0.25663 * 20 9 8 22 22 S 1.70976 * 124.91628 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47031 * 269.95388 * 1 2 3 24 24 H 1.09004 * 109.47343 * 29.95224 * 1 2 3 25 25 H 1.08994 * 109.47294 * 149.95451 * 1 2 3 26 26 H 1.08000 * 122.74730 * 180.33519 * 4 3 2 27 27 H 1.08997 * 109.46644 * 329.71538 * 6 5 4 28 28 H 1.09004 * 109.46850 * 209.72061 * 6 5 4 29 29 H 1.08001 * 126.91913 * 0.04070 * 8 7 6 30 30 H 1.09004 * 109.47205 * 334.71228 * 10 9 8 31 31 H 1.09005 * 109.47240 * 214.71438 * 10 9 8 32 32 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 33 33 H 0.97005 * 119.99715 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0051 5 6 3.9354 -0.4006 -0.0015 6 6 5.3575 -0.8994 -0.0024 7 7 5.8188 -1.0622 1.3785 8 6 6.3358 -2.1924 1.9136 9 6 6.6220 -1.9018 3.2042 10 6 7.2162 -2.8343 4.2281 11 7 8.6696 -2.6546 4.2671 12 6 9.4288 -3.4008 5.1284 13 1 8.9558 -4.1186 5.7822 14 6 10.8061 -3.2310 5.1650 15 7 11.5357 -3.9478 5.9933 16 14 11.6236 -1.9840 4.0397 17 1 11.6925 -0.6687 4.7256 18 1 12.9967 -2.4420 3.7082 19 1 10.8313 -1.8502 2.7908 20 7 6.2791 -0.6223 3.3905 21 7 5.8065 -0.1534 2.2898 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3634 0.8904 -0.5131 25 1 -0.3633 -0.8895 -0.5145 26 1 4.2532 1.7000 0.0109 27 1 5.9946 -0.1794 -0.5159 28 1 5.4055 -1.8591 -0.5171 29 1 6.4872 -3.1371 1.4125 30 1 6.9846 -3.8648 3.9588 31 1 6.7961 -2.6120 5.2091 32 1 9.0941 -2.0071 3.6828 33 1 12.4981 -3.8288 6.0191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330747585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = 137.193210 kcal Electronic energy + Delta-G solvation = -18233.989265 eV Core-core repulsion = 15230.680773 eV Total energy + Delta-G solvation = -3003.308492 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.26582 -40.80159 -37.18917 -36.12812 -33.87075 -33.19632 -31.95330 -30.69425 -27.86108 -27.11190 -24.82045 -24.35974 -23.00865 -22.21805 -20.62190 -19.88431 -19.04319 -18.22895 -17.59508 -16.62100 -16.12350 -16.02364 -15.94557 -15.67513 -15.00572 -14.85474 -14.60264 -14.33804 -14.09536 -13.75501 -13.51256 -13.36502 -13.10681 -12.91359 -12.57879 -12.40594 -12.12506 -11.85644 -11.81209 -11.16255 -11.02275 -10.72099 -10.46396 -10.24985 -9.89121 -9.32247 -8.02588 -5.36014 -0.55047 0.20179 0.58159 0.62385 1.34431 1.36055 1.40547 1.42914 1.47790 1.87682 2.47632 3.09802 3.26844 3.29637 3.50208 3.68961 3.82657 3.98149 4.04953 4.21016 4.22922 4.38132 4.56093 4.60440 4.64389 4.84752 4.93585 5.11072 5.14409 5.14593 5.60732 5.75311 6.21004 6.62824 7.05577 7.49244 7.80491 8.00443 9.18598 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.043369 B = 0.003331 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.463748 B = 8402.961912 C = 8633.551052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.049 3.951 3 N -0.513 5.513 4 C 0.073 3.927 5 C -0.274 4.274 6 C 0.193 3.807 7 N -0.286 5.286 8 C -0.014 4.014 9 C -0.044 4.044 10 C 0.240 3.760 11 N -0.753 5.753 12 C -0.231 4.231 13 H 0.067 0.933 14 C -0.059 4.059 15 N -0.980 5.980 16 Si 0.951 3.049 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.256 1.256 20 N -0.299 5.299 21 N -0.104 5.104 22 S 0.168 5.832 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.235 0.765 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.363 0.637 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.215 4.668 -21.807 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.227 4.227 3 N -0.228 5.228 4 C -0.081 4.081 5 C -0.396 4.396 6 C 0.072 3.928 7 N -0.080 5.080 8 C -0.166 4.166 9 C -0.183 4.183 10 C 0.113 3.887 11 N -0.398 5.398 12 C -0.362 4.362 13 H 0.085 0.915 14 C -0.250 4.250 15 N -0.631 5.631 16 Si 0.779 3.221 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.181 1.181 20 N -0.167 5.167 21 N -0.083 5.083 22 S 0.424 5.576 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.199 0.801 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.195 0.805 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.076 5.411 -21.359 32.637 hybrid contribution 1.798 0.557 -0.302 1.907 sum -22.278 5.968 -21.661 31.640 Atomic orbital electron populations 1.20691 0.82812 1.05762 1.05053 1.27804 1.03516 0.91018 1.00398 1.66396 1.05359 1.32786 1.18295 1.21979 0.91266 0.96600 0.98238 1.25830 0.99609 0.97028 1.17138 1.20704 0.88694 1.07584 0.75816 1.47754 1.40071 1.07923 1.12268 1.23971 1.03258 0.95012 0.94311 1.22269 1.06371 0.93329 0.96303 1.18903 0.81859 0.94532 0.93456 1.42678 1.02832 1.47345 1.46981 1.19056 0.89492 1.14549 1.13083 0.91505 1.25399 0.96833 1.01717 1.01099 1.69859 1.05629 1.45499 1.42075 0.85463 0.77876 0.78919 0.79795 1.21475 1.21575 1.18133 1.75070 1.13973 1.10407 1.17210 1.78189 1.19968 1.17033 0.93123 1.83866 0.96150 1.10844 1.66726 0.88571 0.88671 0.87543 0.80125 0.84210 0.82473 0.74892 0.91317 0.95088 0.80474 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.46 71.24 0.75 0.03 16 2 C 0.05 0.78 7.39 88.52 0.65 1.43 16 3 N -0.51 -10.75 10.54 -191.45 -2.02 -12.77 16 4 C 0.07 1.39 11.25 83.65 0.94 2.33 16 5 C -0.27 -4.33 5.97 24.64 0.15 -4.18 16 6 C 0.19 2.40 6.99 85.63 0.60 3.00 16 7 N -0.29 -6.56 3.43 -351.47 -1.21 -7.77 16 8 C -0.01 -0.34 11.50 83.49 0.96 0.62 16 9 C -0.04 -1.53 6.61 41.59 0.28 -1.26 16 10 C 0.24 9.49 6.82 85.63 0.58 10.07 16 11 N -0.75 -36.55 5.40 -347.17 -1.87 -38.42 16 12 C -0.23 -13.34 10.47 84.04 0.88 -12.46 16 13 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 14 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 15 N -0.98 -63.21 13.97 21.65 0.30 -62.91 16 16 Si 0.95 47.01 27.74 68.60 1.90 48.91 16 17 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.26 -11.55 6.52 99.48 0.65 -10.90 16 20 N -0.30 -11.55 12.41 -48.60 -0.60 -12.15 16 21 N -0.10 -3.35 12.92 37.02 0.48 -2.88 16 22 S 0.17 2.27 23.18 -56.49 -1.31 0.96 16 23 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.16 0.73 8.07 -2.39 -0.02 0.71 16 29 H 0.23 3.41 8.06 -2.91 -0.02 3.38 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.36 17.45 5.52 -92.71 -0.51 16.94 16 33 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -80.87 308.21 2.50 -78.37 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.57 Total: 12.11 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.25 Total: -3.46 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -4.92 Total: -136.89 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.90 Total: 48.91 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -80.87 2.50 -78.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330747585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.563 kcal (2) G-P(sol) polarization free energy of solvation -80.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds