Wall clock time and date at job start Wed Apr 15 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00025 * 8 6 4 11 11 H 1.48498 * 109.46942 * 239.99938 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.38654 * 119.99780 * 179.97438 * 13 12 2 15 15 N 1.32540 * 119.54549 * 359.73065 * 14 13 12 16 16 C 1.31663 * 121.79035 * 179.74732 * 15 14 13 17 17 C 1.39582 * 120.66248 * 0.52430 * 16 15 14 18 18 C 1.43201 * 120.48545 * 179.76202 * 17 16 15 19 19 N 8.95669 * 101.00081 * 105.96741 * 2 1 3 20 20 C 1.40353 * 119.03802 * 359.74603 * 17 16 15 21 21 C 1.37987 * 118.35963 * 359.97438 * 20 17 16 22 22 Cl 1.73604 * 120.38339 * 179.97438 * 21 20 17 23 23 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 24 24 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 25 25 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 28 28 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 29 29 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 33 33 H 1.08006 * 119.66643 * 180.24633 * 16 15 14 34 34 H 1.08002 * 120.81932 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1471 -2.2864 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8864 -0.5048 3.7046 15 7 2.6440 -1.5867 3.8157 16 6 2.9923 -2.0721 4.9890 17 6 2.5611 -1.4622 6.1681 18 6 2.9380 -1.9963 7.4422 19 7 3.2392 -2.4186 8.4529 20 6 1.7529 -0.3176 6.0870 21 6 1.4168 0.1602 4.8369 22 17 0.4193 1.5719 4.6754 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 0.7080 1.1609 -3.4844 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 0.9939 0.7578 2.3565 33 1 3.6143 -2.9536 5.0395 34 1 1.4034 0.1775 6.9809 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413400896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:18 Heat of formation + Delta-G solvation = 40.442019 kcal Electronic energy + Delta-G solvation = -18761.657701 eV Core-core repulsion = 15719.817305 eV Total energy + Delta-G solvation = -3041.840396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.47274 -38.80120 -37.72578 -37.44386 -35.67184 -33.47947 -33.08510 -30.77576 -27.55956 -27.47597 -26.76322 -25.00275 -23.92050 -20.56007 -20.14807 -19.26086 -17.88508 -17.61770 -16.67082 -16.14742 -16.10370 -15.67768 -15.10936 -15.02340 -14.60938 -14.30686 -14.26744 -14.05141 -13.94355 -13.47894 -13.28520 -13.08806 -13.01874 -12.72767 -12.52139 -12.29233 -12.15159 -12.09165 -11.57153 -11.14704 -11.08653 -10.74052 -10.64028 -10.57497 -10.35697 -8.72404 -7.99188 -6.14817 -0.24047 0.08870 1.02106 1.44473 1.49385 1.57838 1.71900 1.97005 2.15429 2.50106 2.85624 2.90469 3.25297 3.45275 3.75956 3.77591 4.32480 4.45657 4.53139 4.60328 4.73654 4.86042 5.02090 5.06472 5.13037 5.22711 5.23251 5.48001 5.68194 5.71072 5.97977 6.15706 6.22597 6.27290 6.45807 6.52147 6.91178 7.06818 7.53457 9.00006 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.004195 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.610245 B = 6672.465440 C = 7517.009691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.048 3.952 3 C -0.122 4.122 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.156 3.844 13 N -0.691 5.691 14 C 0.433 3.567 15 N -0.549 5.549 16 C 0.225 3.775 17 C -0.151 4.151 18 C 0.299 3.701 19 N -0.467 5.467 20 C 0.041 3.959 21 C -0.175 4.175 22 Cl -0.051 7.051 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.258 0.742 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.414 0.586 33 H 0.197 0.803 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -0.270 14.013 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 C -0.180 4.180 4 C -0.560 4.560 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.542 5.542 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.033 3.967 13 N -0.319 5.319 14 C 0.192 3.808 15 N -0.267 5.267 16 C 0.061 3.939 17 C -0.161 4.161 18 C -0.015 4.015 19 N -0.144 5.144 20 C 0.013 3.987 21 C -0.210 4.210 22 Cl -0.023 7.023 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.254 0.746 33 H 0.213 0.787 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.805 -1.131 14.377 14.444 hybrid contribution -0.480 0.681 -0.908 1.233 sum 0.325 -0.450 13.469 13.481 Atomic orbital electron populations 1.21681 0.97615 0.98740 0.99922 1.18390 0.92897 0.92898 0.91047 1.21680 0.98132 0.98226 0.99923 1.21307 1.31381 1.12119 0.91175 0.92943 1.25476 0.95213 0.95564 1.01117 1.69930 1.37259 1.23547 1.23422 0.85711 0.78017 0.78812 0.80282 1.19458 1.21133 1.21121 1.21366 0.97627 0.95111 0.82606 1.45268 1.52700 1.31390 1.02493 1.18588 0.87997 0.88365 0.85817 1.67610 1.17997 1.12792 1.28289 1.23156 0.90611 0.96085 0.84083 1.16435 1.10625 1.01480 0.87595 1.25122 0.92107 0.92369 0.91925 1.81303 1.11041 1.10177 1.11848 1.21378 0.89564 0.91197 0.96539 1.20961 1.08696 0.97335 0.94003 1.98372 1.67878 1.38239 1.97799 0.95304 0.92135 0.95892 0.95884 0.92146 0.95291 0.93216 0.92968 0.92975 0.74630 0.78672 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 2 C 0.05 2.11 0.50 -52.93 -0.03 2.08 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 4 C -0.52 -26.07 8.01 25.60 0.21 -25.86 16 5 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.31 5.15 84.66 0.44 1.75 16 7 N -0.90 -47.31 9.35 21.45 0.20 -47.11 16 8 Si 0.94 41.23 29.54 68.60 2.03 43.25 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.16 5.85 4.50 86.38 0.39 6.24 16 13 N -0.69 -21.64 5.05 -344.99 -1.74 -23.38 16 14 C 0.43 11.74 7.48 133.22 1.00 12.74 16 15 N -0.55 -14.33 9.53 -192.16 -1.83 -16.16 16 16 C 0.22 4.24 10.91 85.04 0.93 5.17 16 17 C -0.15 -2.63 5.75 -21.19 -0.12 -2.76 16 18 C 0.30 5.78 15.37 88.33 1.36 7.14 16 19 N -0.47 -11.25 18.54 19.00 0.35 -10.89 16 20 C 0.04 0.70 9.69 22.73 0.22 0.92 16 21 C -0.18 -3.86 6.35 22.50 0.14 -3.72 16 22 Cl -0.05 -1.10 27.59 -2.72 -0.08 -1.18 16 23 H 0.03 1.07 6.86 -2.39 -0.02 1.05 16 24 H 0.06 2.95 6.07 -2.39 -0.01 2.94 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 2.95 6.07 -2.38 -0.01 2.93 16 28 H 0.03 1.07 6.86 -2.39 -0.02 1.06 16 29 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.41 12.70 4.79 -92.71 -0.44 12.26 16 33 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -55.13 306.18 5.32 -49.81 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.70 Total: 11.32 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.69 Total: -5.66 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -3.02 Total: -97.55 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -55.13 5.32 -49.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413400896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.252 kcal (2) G-P(sol) polarization free energy of solvation -55.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds