Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47434 * 2 1 4 4 C 1.50699 * 109.47209 * 239.99960 * 2 1 3 5 5 H 1.08003 * 120.00066 * 239.99921 * 4 2 1 6 6 C 1.37878 * 120.00312 * 60.00167 * 4 2 1 7 7 N 1.31517 * 119.99836 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00269 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46971 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46856 * 120.00191 * 8 6 4 11 11 H 1.48503 * 109.46881 * 239.99702 * 8 6 4 12 12 C 1.52998 * 109.47012 * 119.99868 * 2 1 3 13 13 N 1.46493 * 109.47216 * 299.99844 * 12 2 1 14 14 C 1.31580 * 120.00174 * 245.60448 * 13 12 2 15 15 N 1.37395 * 120.16700 * 5.65785 * 14 13 12 16 16 H 0.96997 * 119.64006 * 0.02562 * 15 14 13 17 17 C 1.36482 * 120.71407 * 179.75796 * 15 14 13 18 18 C 1.34569 * 121.08575 * 0.52294 * 17 15 14 19 19 C 1.41858 * 120.29820 * 359.73993 * 18 17 15 20 20 C 1.43195 * 120.37062 * 180.02562 * 19 18 17 21 21 N 8.04701 * 94.08310 * 69.74986 * 2 1 3 22 22 C 1.38155 * 119.25998 * 359.97438 * 19 18 17 23 23 Cl 1.73608 * 120.50995 * 180.02562 * 22 19 18 24 24 H 1.08995 * 109.46845 * 300.00396 * 1 2 3 25 25 H 1.09003 * 109.46494 * 59.99790 * 1 2 3 26 26 H 1.08997 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47559 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46851 * 300.00088 * 3 2 1 29 29 H 1.08999 * 109.47297 * 59.99489 * 3 2 1 30 30 H 0.96991 * 120.00074 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46807 * 60.00290 * 12 2 1 32 32 H 1.09006 * 109.47254 * 180.02562 * 12 2 1 33 33 H 1.08003 * 119.45777 * 180.28179 * 17 15 14 34 34 H 1.07998 * 119.85510 * 179.71436 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9437 0.8302 -2.6035 8 14 2.3215 -1.1204 -4.0080 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5866 -4.8161 11 1 3.1467 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 2.4016 0.5649 3.2543 15 7 3.7326 0.6419 2.9223 16 1 4.0421 0.2551 2.0883 17 6 4.6230 1.2613 3.7507 18 6 4.2262 1.8031 4.9168 19 6 2.8633 1.7444 5.3062 20 6 2.4393 2.3209 6.5464 21 7 2.1030 2.7782 7.5305 22 6 1.9496 1.1257 4.4749 23 17 0.2737 1.0358 4.9191 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7091 1.1614 -3.4844 31 1 1.6766 -1.7489 1.2492 32 1 3.1300 -0.7208 1.2495 33 1 5.6639 1.3140 3.4675 34 1 4.9485 2.2845 5.5593 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413415148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 80.805554 kcal Electronic energy + Delta-G solvation = -19103.408317 eV Core-core repulsion = 16063.318216 eV Total energy + Delta-G solvation = -3040.090102 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46218 -37.24518 -36.52884 -36.29402 -34.07274 -32.92077 -31.30941 -28.97175 -26.41922 -25.61776 -25.20306 -23.94632 -22.34300 -19.17605 -18.71813 -17.95771 -17.00285 -16.07633 -15.63471 -15.04242 -14.65593 -14.32750 -13.93917 -13.64630 -13.35606 -13.10938 -12.86618 -12.54584 -12.27050 -12.12027 -12.09149 -11.44820 -11.23699 -10.86817 -10.86548 -10.67006 -10.49077 -10.30572 -10.16005 -9.87459 -9.55633 -9.24403 -9.08369 -8.58877 -8.36057 -7.09110 -5.99365 -4.11965 0.28264 1.73601 1.96582 2.49895 2.85856 3.16379 3.24149 3.33327 3.35291 3.56572 3.61922 4.35496 4.48658 4.76874 4.84752 5.25695 5.44823 5.58226 5.75048 5.92246 6.03360 6.39036 6.52246 6.74748 6.83050 7.04535 7.06463 7.15325 7.29206 7.33960 7.43842 7.65850 7.71511 8.07392 8.20939 8.31794 8.45460 8.89634 9.54016 11.00520 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.004523 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.059964 B = 6188.590010 C = 6690.712120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.074 3.926 3 C -0.128 4.128 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.062 3.938 13 N -0.525 5.525 14 C 0.360 3.640 15 N -0.632 5.632 16 H 0.425 0.575 17 C 0.164 3.836 18 C -0.233 4.233 19 C 0.050 3.950 20 C 0.258 3.742 21 N -0.402 5.402 22 C -0.002 4.002 23 Cl -0.016 7.016 24 H 0.021 0.979 25 H 0.076 0.924 26 H 0.020 0.980 27 H 0.014 0.986 28 H 0.083 0.917 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.166 0.834 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 1.187 12.055 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 C -0.185 4.185 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.717 3.283 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.067 4.067 13 N -0.247 5.247 14 C 0.090 3.910 15 N -0.256 5.256 16 H 0.267 0.733 17 C 0.034 3.966 18 C -0.262 4.262 19 C 0.041 3.959 20 C -0.058 4.058 21 N -0.077 5.077 22 C -0.037 4.037 23 Cl 0.013 6.987 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.183 0.817 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.146 1.724 13.234 14.693 hybrid contribution 1.346 -0.760 -1.848 2.409 sum 7.492 0.964 11.386 13.664 Atomic orbital electron populations 1.21647 0.97085 0.98777 1.00350 1.18151 0.93573 0.91888 0.89063 1.21795 0.97039 0.99058 1.00636 1.21121 1.31603 1.12011 0.90348 0.92822 1.24890 0.94897 0.94897 0.98751 1.69846 1.36460 1.22682 1.22990 0.86588 0.78662 0.79670 0.83336 1.19912 1.21025 1.21139 1.22356 0.95556 0.98371 0.90450 1.73360 1.29651 1.14282 1.07448 1.19039 0.80190 0.98025 0.93738 1.43040 1.07105 1.52406 1.23084 0.73312 1.21703 0.95379 0.89850 0.89644 1.19968 0.93408 1.13007 0.99854 1.15847 0.93650 0.98254 0.88183 1.25340 0.93591 0.94012 0.92832 1.81209 1.07330 1.08256 1.10911 1.20539 0.87143 1.02492 0.93563 1.98399 1.12834 1.96400 1.91059 0.95986 0.90572 0.96085 0.96708 0.89795 0.97045 0.93102 0.90510 0.96351 0.81657 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 2 C 0.07 1.72 0.57 -155.66 -0.09 1.64 16 3 C -0.13 -2.92 8.09 37.16 0.30 -2.62 16 4 C -0.51 -13.08 8.01 -34.44 -0.28 -13.35 16 5 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -23.78 9.35 55.43 0.52 -23.26 16 8 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.06 1.22 5.11 -4.05 -0.02 1.20 16 13 N -0.52 -9.63 8.54 -60.29 -0.51 -10.15 16 14 C 0.36 5.45 7.29 -156.26 -1.14 4.31 16 15 N -0.63 -7.41 5.24 -12.16 -0.06 -7.47 16 16 H 0.42 4.99 6.23 -40.82 -0.25 4.74 16 17 C 0.16 1.29 11.16 -16.78 -0.19 1.11 16 18 C -0.23 -1.98 9.71 -39.50 -0.38 -2.36 16 19 C 0.05 0.58 5.75 -106.62 -0.61 -0.03 16 20 C 0.26 3.22 14.42 -22.48 -0.32 2.89 16 21 N -0.40 -5.62 18.54 41.84 0.78 -4.85 16 22 C 0.00 -0.03 6.43 -38.28 -0.25 -0.27 16 23 Cl -0.02 -0.24 27.62 -51.86 -1.43 -1.67 16 24 H 0.02 0.51 7.60 -51.93 -0.39 0.11 16 25 H 0.08 2.03 6.07 -51.93 -0.32 1.72 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 29 H 0.01 0.24 7.44 -51.93 -0.39 -0.15 16 30 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.02 0.32 5.51 -51.93 -0.29 0.04 16 33 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -29.18 305.44 -7.51 -36.69 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.61 Total: -0.68 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.77 Total: -8.48 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.72 Total: -45.73 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.43 Total: -1.67 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.18 -7.51 -36.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.496 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds