Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46926 * 2 1 4 4 C 1.53004 * 109.46795 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46884 * 179.97438 * 4 3 2 6 6 C 1.36813 * 120.00627 * 263.24244 * 5 4 3 7 7 H 1.08000 * 120.00155 * 142.35927 * 6 5 4 8 8 C 1.38886 * 119.99786 * 322.35929 * 6 5 4 9 9 N 1.31512 * 120.00003 * 158.40579 * 8 6 5 10 10 Si 1.86806 * 120.00147 * 338.40687 * 8 6 5 11 11 H 1.48498 * 109.47161 * 95.99007 * 10 8 6 12 12 H 1.48498 * 109.46828 * 215.99255 * 10 8 6 13 13 H 1.48501 * 109.46810 * 335.98789 * 10 8 6 14 14 C 1.38441 * 119.99536 * 83.24467 * 5 4 3 15 15 C 1.39445 * 120.95558 * 89.99560 * 14 5 4 16 16 C 1.38023 * 119.19666 * 179.70164 * 15 14 5 17 17 Cl 1.73605 * 119.40309 * 180.25783 * 16 15 14 18 18 N 1.32259 * 121.20238 * 0.27883 * 16 15 14 19 19 C 1.31666 * 122.11904 * 359.97438 * 18 16 15 20 20 C 1.39541 * 120.64640 * 0.02562 * 19 18 16 21 21 C 1.43197 * 120.63057 * 179.97438 * 20 19 18 22 22 N 4.47070 * 81.47914 * 4.72406 * 2 1 3 23 23 H 1.09006 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47265 * 300.00163 * 1 2 3 25 25 H 1.08996 * 109.47177 * 60.00412 * 1 2 3 26 26 H 1.08997 * 109.47265 * 239.99836 * 2 1 3 27 27 H 1.09004 * 109.46932 * 119.99771 * 2 1 3 28 28 H 1.09002 * 109.47523 * 60.00260 * 3 2 1 29 29 H 1.08990 * 109.47291 * 299.99727 * 3 2 1 30 30 H 1.09007 * 109.47219 * 60.00535 * 4 3 2 31 31 H 1.08996 * 109.47657 * 299.99802 * 4 3 2 32 32 H 0.97001 * 120.00382 * 180.02562 * 9 8 6 33 33 H 1.08007 * 120.40424 * 359.97438 * 15 14 5 34 34 H 1.07997 * 119.67847 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4183 3.4216 -1.1767 7 1 4.1981 4.4661 -1.3412 8 6 5.0668 2.6854 -2.1597 9 7 5.0398 3.0910 -3.4104 10 14 5.9776 1.1189 -1.7054 11 1 5.0950 -0.0522 -1.9390 12 1 7.1972 0.9947 -2.5434 13 1 6.3645 1.1693 -0.2725 14 6 4.1555 3.5240 1.1903 15 6 5.3254 3.4910 1.9484 16 6 5.3848 4.2078 3.1264 17 17 6.8410 4.1759 4.0711 18 7 4.3523 4.9182 3.5490 19 6 3.2227 4.9804 2.8754 20 6 3.0722 4.2877 1.6735 21 6 1.8433 4.3551 0.9415 22 7 0.8676 4.4063 0.3641 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9288 0.8908 32 1 5.4924 2.5767 -4.0971 33 1 6.1764 2.9150 1.6156 34 1 2.4043 5.5726 3.2574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 71.805095 kcal Electronic energy + Delta-G solvation = -19468.157061 eV Core-core repulsion = 16427.676670 eV Total energy + Delta-G solvation = -3040.480391 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.17998 -37.28833 -36.42752 -35.90338 -34.35472 -32.44360 -31.09159 -30.79350 -28.31583 -24.90442 -24.14868 -23.62665 -21.34176 -20.73300 -18.65267 -17.56242 -16.73493 -16.54189 -15.63544 -14.84510 -14.58204 -14.26469 -14.17810 -13.69455 -13.27987 -13.23093 -12.93509 -12.80146 -12.47918 -12.29888 -12.07192 -11.81240 -11.44187 -11.40652 -11.24422 -11.17094 -10.71727 -10.65104 -10.41412 -10.00245 -9.81034 -9.63205 -9.20833 -8.90842 -8.74596 -7.52586 -6.36832 -3.87256 0.73513 1.38913 1.91379 3.08081 3.16144 3.23923 3.26158 3.26742 4.09147 4.15583 4.24921 4.33862 4.60102 4.93577 5.09902 5.26656 5.28986 5.40192 5.46985 5.68267 5.73539 5.81482 6.00676 6.06210 6.12121 6.17283 6.28559 6.34594 6.45202 6.57559 6.67955 6.87481 7.62074 7.76376 7.99560 8.06021 8.53469 9.25196 9.55576 10.75239 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.007888 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.471229 B = 3548.889592 C = 4575.767392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.137 4.137 4 C 0.131 3.869 5 N -0.565 5.565 6 C -0.284 4.284 7 H 0.087 0.913 8 C 0.053 3.947 9 N -0.873 5.873 10 Si 0.878 3.122 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.263 1.263 14 C 0.314 3.686 15 C -0.171 4.171 16 C 0.197 3.803 17 Cl -0.041 7.041 18 N -0.499 5.499 19 C 0.171 3.829 20 C -0.109 4.109 21 C 0.277 3.723 22 N -0.417 5.417 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.272 0.728 33 H 0.149 0.851 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -2.795 11.587 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.176 4.176 4 C 0.008 3.992 5 N -0.281 5.281 6 C -0.410 4.410 7 H 0.104 0.896 8 C -0.152 4.152 9 N -0.510 5.510 10 Si 0.706 3.294 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.187 1.187 14 C 0.207 3.793 15 C -0.195 4.195 16 C 0.034 3.966 17 Cl -0.013 7.013 18 N -0.210 5.210 19 C 0.009 3.991 20 C -0.119 4.119 21 C -0.038 4.038 22 N -0.093 5.093 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.167 0.833 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.150 -2.310 11.277 11.710 hybrid contribution 1.114 -1.265 -0.477 1.752 sum -1.036 -3.575 10.800 11.423 Atomic orbital electron populations 1.21729 0.96193 1.00766 1.01786 1.21493 0.95638 0.97568 1.01488 1.22190 0.97424 0.95739 1.02275 1.21547 0.92814 0.84421 1.00390 1.41553 1.73440 1.12090 1.01064 1.18683 1.35739 0.98071 0.88471 0.89572 1.25454 0.96320 0.98359 0.95034 1.69779 1.41319 1.40075 0.99809 0.86925 0.79782 0.83363 0.79298 1.20662 1.22061 1.18713 1.17785 0.88282 0.87967 0.85251 1.22681 1.01237 1.01980 0.93561 1.21729 0.89138 0.94909 0.90788 1.98389 1.32582 1.97104 1.73204 1.66986 0.99667 1.20050 1.34341 1.22527 0.93763 0.93972 0.88816 1.18058 0.91408 1.04903 0.97495 1.24846 0.92145 0.93596 0.93250 1.81095 1.12202 1.08282 1.07701 0.93307 0.93122 0.92746 0.92156 0.92537 0.92977 0.91033 0.91102 0.93621 0.91805 0.83302 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.14 -2.47 4.55 -26.73 -0.12 -2.59 16 4 C 0.13 2.57 4.24 -4.04 -0.02 2.56 16 5 N -0.57 -12.03 1.62 -112.65 -0.18 -12.21 16 6 C -0.28 -7.18 9.89 -15.09 -0.15 -7.33 16 7 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 8 C 0.05 1.39 5.27 -17.45 -0.09 1.30 16 9 N -0.87 -24.46 13.96 55.49 0.77 -23.69 16 10 Si 0.88 19.77 24.98 -169.99 -4.25 15.52 16 11 H -0.28 -6.12 6.71 56.52 0.38 -5.74 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.31 5.82 5.07 -83.35 -0.42 5.40 16 15 C -0.17 -2.87 9.81 -39.21 -0.38 -3.26 16 16 C 0.20 3.03 7.26 -17.45 -0.13 2.90 16 17 Cl -0.04 -0.56 29.09 -51.86 -1.51 -2.07 16 18 N -0.50 -7.51 10.31 -10.09 -0.10 -7.61 16 19 C 0.17 2.39 10.92 -17.14 -0.19 2.21 16 20 C -0.11 -1.83 5.73 -106.41 -0.61 -2.44 16 21 C 0.28 5.03 12.27 -22.51 -0.28 4.76 16 22 N -0.42 -8.16 18.44 41.79 0.77 -7.39 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.92 6.27 -51.93 -0.33 0.60 16 29 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.51 3.60 -51.92 -0.19 1.32 16 31 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.15 2.49 8.06 -52.48 -0.42 2.07 16 34 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -27.15 309.49 -5.90 -33.05 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.90 Total: -0.11 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.18 Total: -0.16 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 1.26 Total: -50.90 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.25 Total: 15.52 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.15 -5.90 -33.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.856 kcal (2) G-P(sol) polarization free energy of solvation -27.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds