Wall clock time and date at job start Wed Apr 15 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 C 1.52999 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47149 * 180.02562 * 4 3 2 6 6 C 1.36882 * 120.00180 * 89.99942 * 5 4 3 7 7 H 1.08003 * 119.99556 * 8.30241 * 6 5 4 8 8 C 1.38850 * 119.99755 * 188.30521 * 6 5 4 9 9 N 1.31522 * 120.00488 * 15.57027 * 8 6 5 10 10 Si 1.86798 * 119.99764 * 195.84056 * 8 6 5 11 11 H 1.48500 * 109.47161 * 90.00161 * 10 8 6 12 12 H 1.48504 * 109.47572 * 209.99958 * 10 8 6 13 13 H 1.48497 * 109.47341 * 330.00160 * 10 8 6 14 14 C 1.38294 * 119.99766 * 270.00177 * 5 4 3 15 15 N 1.32473 * 119.82237 * 86.85435 * 14 5 4 16 16 C 1.31838 * 121.81365 * 179.74985 * 15 14 5 17 17 C 1.38345 * 121.25590 * 0.52801 * 16 15 14 18 18 C 1.38561 * 119.49532 * 359.74362 * 17 16 15 19 19 Cl 1.73603 * 120.83400 * 179.97438 * 18 17 16 20 20 C 1.40132 * 118.33136 * 359.97438 * 18 17 16 21 21 C 1.43202 * 120.62459 * 180.02562 * 20 18 17 22 22 N 6.38998 * 159.03293 * 344.28913 * 2 1 3 23 23 H 1.08996 * 109.47154 * 299.99910 * 1 2 3 24 24 H 1.09005 * 109.46982 * 59.99749 * 1 2 3 25 25 H 1.08999 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47022 * 240.00372 * 2 1 3 27 27 H 1.08997 * 109.47153 * 120.00527 * 2 1 3 28 28 H 1.09004 * 109.46834 * 60.00257 * 3 2 1 29 29 H 1.08997 * 109.47502 * 300.00313 * 3 2 1 30 30 H 1.08996 * 109.47154 * 60.00090 * 4 3 2 31 31 H 1.09002 * 109.47210 * 299.99785 * 4 3 2 32 32 H 0.96999 * 119.99987 * 184.93896 * 9 8 6 33 33 H 1.07997 * 119.37114 * 180.29371 * 16 15 14 34 34 H 1.07999 * 120.25434 * 179.71734 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2860 3.4687 1.1870 7 1 4.2357 2.9222 2.1172 8 6 4.5814 4.8254 1.1937 9 7 4.3475 5.5547 0.1245 10 14 5.3182 5.6132 2.7188 11 1 6.7998 5.5442 2.6449 12 1 4.8922 7.0336 2.7973 13 1 4.8486 4.8881 3.9266 14 6 4.2893 3.4760 -1.1961 15 7 3.2992 4.1177 -1.7984 16 6 3.4765 4.7564 -2.9380 17 6 4.7093 4.7763 -3.5655 18 6 5.7811 4.1177 -2.9846 19 17 7.3432 4.1196 -3.7421 20 6 5.5725 3.4500 -1.7704 21 6 6.6459 2.7540 -1.1268 22 7 7.4969 2.2011 -0.6192 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 4.6194 6.4856 0.1035 33 1 2.6426 5.2707 -3.3923 34 1 4.8353 5.3009 -4.5011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:37 Heat of formation + Delta-G solvation = 73.305039 kcal Electronic energy + Delta-G solvation = -19598.707824 eV Core-core repulsion = 16558.292476 eV Total energy + Delta-G solvation = -3040.415348 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.55709 -36.66771 -36.07331 -35.60522 -34.18709 -31.58463 -31.41922 -30.02539 -27.85239 -24.75263 -23.80070 -23.08454 -21.09649 -20.38507 -18.40993 -17.87985 -16.16456 -15.73349 -15.08482 -14.95010 -13.98931 -13.89325 -13.57877 -13.44991 -13.33680 -12.85059 -12.39593 -12.21597 -12.08761 -12.05516 -11.73734 -11.55472 -11.39081 -11.06000 -10.99705 -10.83043 -10.68487 -10.59815 -10.36075 -10.09247 -9.91691 -9.21073 -8.74670 -8.64070 -8.10543 -7.42197 -6.05070 -3.53379 1.41546 1.91242 2.34786 3.29121 3.35551 3.36640 3.53730 3.87565 4.21131 4.54985 4.73928 4.84954 5.17769 5.32049 5.34987 5.43821 5.54039 5.67327 5.82001 5.93371 5.99347 6.10413 6.18114 6.22388 6.27592 6.38064 6.40569 6.46892 6.60099 6.83314 7.01200 7.11466 7.49903 7.98528 8.32724 8.82156 9.06353 9.46675 9.84015 10.98835 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.008344 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.459745 B = 3354.899417 C = 4421.527497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.154 3.846 5 N -0.554 5.554 6 C -0.257 4.257 7 H 0.091 0.909 8 C 0.002 3.998 9 N -0.890 5.890 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.547 3.453 15 N -0.457 5.457 16 C 0.159 3.841 17 C -0.212 4.212 18 C 0.055 3.945 19 Cl -0.075 7.075 20 C -0.106 4.106 21 C 0.292 3.708 22 N -0.442 5.442 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.263 0.737 33 H 0.151 0.849 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -3.970 -7.347 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.176 4.176 4 C 0.029 3.971 5 N -0.273 5.273 6 C -0.384 4.384 7 H 0.109 0.891 8 C -0.197 4.197 9 N -0.533 5.533 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.201 1.201 14 C 0.316 3.684 15 N -0.169 5.169 16 C -0.005 4.005 17 C -0.233 4.233 18 C 0.018 3.982 19 Cl -0.046 7.046 20 C -0.117 4.117 21 C -0.023 4.023 22 N -0.119 5.119 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.043 -4.648 -6.109 8.257 hybrid contribution 0.989 1.162 0.155 1.534 sum -2.054 -3.486 -5.954 7.199 Atomic orbital electron populations 1.21743 0.96443 1.00617 1.01775 1.21509 0.95427 0.98024 1.01191 1.22182 0.97630 0.94819 1.03004 1.20963 0.92522 0.83627 0.99950 1.41430 1.75067 1.10323 1.00439 1.19403 1.42863 0.91480 0.84623 0.89088 1.24847 1.00603 0.95794 0.98408 1.69520 1.47531 1.07810 1.28450 0.86095 0.79327 0.78521 0.81936 1.21186 1.21389 1.20113 1.17315 0.84651 0.81989 0.84395 1.67849 1.35430 1.06595 1.06986 1.22534 0.94782 0.93230 0.89944 1.21627 0.93039 1.05324 1.03333 1.21153 0.86607 0.97858 0.92631 1.98352 1.27693 1.97338 1.81244 1.17484 0.92585 1.05845 0.95767 1.24924 0.92054 0.92756 0.92527 1.80948 1.11107 1.10753 1.09051 0.92896 0.92931 0.93550 0.92696 0.92525 0.91624 0.91766 0.93960 0.92180 0.92575 0.83186 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.84 16 3 C -0.14 -2.35 5.54 -26.73 -0.15 -2.50 16 4 C 0.15 2.97 5.65 -4.04 -0.02 2.95 16 5 N -0.55 -12.84 2.00 -114.78 -0.23 -13.07 16 6 C -0.26 -6.55 9.74 -15.07 -0.15 -6.69 16 7 H 0.09 2.27 7.86 -52.48 -0.41 1.86 16 8 C 0.00 0.06 5.29 -17.46 -0.09 -0.04 16 9 N -0.89 -23.69 10.29 55.49 0.57 -23.12 16 10 Si 0.91 21.46 29.58 -169.99 -5.03 16.43 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.55 12.36 3.62 -155.08 -0.56 11.80 16 15 N -0.46 -9.81 9.32 -12.17 -0.11 -9.92 16 16 C 0.16 2.75 11.16 -17.51 -0.20 2.56 16 17 C -0.21 -3.43 9.91 -39.42 -0.39 -3.82 16 18 C 0.05 1.02 6.40 -38.75 -0.25 0.77 16 19 Cl -0.08 -1.25 28.18 -51.86 -1.46 -2.71 16 20 C -0.11 -2.28 5.74 -106.36 -0.61 -2.89 16 21 C 0.29 6.63 14.00 -22.51 -0.32 6.31 16 22 N -0.44 -10.28 18.53 41.79 0.77 -9.50 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 31 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -28.27 317.47 -7.41 -35.68 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -4.19 Total: -3.73 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.52 Total: 5.16 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 1.00 Total: -55.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.46 Total: -2.71 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.27 -7.41 -35.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.987 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds