Wall clock time and date at job start Wed Apr 15 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 C 1.52999 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47149 * 180.02562 * 4 3 2 6 6 C 1.36882 * 120.00180 * 89.99942 * 5 4 3 7 7 H 1.08003 * 119.99556 * 8.30241 * 6 5 4 8 8 C 1.38850 * 119.99755 * 188.30521 * 6 5 4 9 9 N 1.31522 * 120.00488 * 15.57027 * 8 6 5 10 10 Si 1.86798 * 119.99764 * 195.84056 * 8 6 5 11 11 H 1.48500 * 109.47161 * 90.00161 * 10 8 6 12 12 H 1.48504 * 109.47572 * 209.99958 * 10 8 6 13 13 H 1.48497 * 109.47341 * 330.00160 * 10 8 6 14 14 C 1.38294 * 119.99766 * 270.00177 * 5 4 3 15 15 N 1.32473 * 119.82237 * 86.85435 * 14 5 4 16 16 C 1.31838 * 121.81365 * 179.74985 * 15 14 5 17 17 C 1.38345 * 121.25590 * 0.52801 * 16 15 14 18 18 C 1.38561 * 119.49532 * 359.74362 * 17 16 15 19 19 Cl 1.73603 * 120.83400 * 179.97438 * 18 17 16 20 20 C 1.40132 * 118.33136 * 359.97438 * 18 17 16 21 21 C 1.43202 * 120.62459 * 180.02562 * 20 18 17 22 22 N 6.38998 * 159.03293 * 344.28913 * 2 1 3 23 23 H 1.08996 * 109.47154 * 299.99910 * 1 2 3 24 24 H 1.09005 * 109.46982 * 59.99749 * 1 2 3 25 25 H 1.08999 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47022 * 240.00372 * 2 1 3 27 27 H 1.08997 * 109.47153 * 120.00527 * 2 1 3 28 28 H 1.09004 * 109.46834 * 60.00257 * 3 2 1 29 29 H 1.08997 * 109.47502 * 300.00313 * 3 2 1 30 30 H 1.08996 * 109.47154 * 60.00090 * 4 3 2 31 31 H 1.09002 * 109.47210 * 299.99785 * 4 3 2 32 32 H 0.96999 * 119.99987 * 184.93896 * 9 8 6 33 33 H 1.07997 * 119.37114 * 180.29371 * 16 15 14 34 34 H 1.07999 * 120.25434 * 179.71734 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2860 3.4687 1.1870 7 1 4.2357 2.9222 2.1172 8 6 4.5814 4.8254 1.1937 9 7 4.3475 5.5547 0.1245 10 14 5.3182 5.6132 2.7188 11 1 6.7998 5.5442 2.6449 12 1 4.8922 7.0336 2.7973 13 1 4.8486 4.8881 3.9266 14 6 4.2893 3.4760 -1.1961 15 7 3.2992 4.1177 -1.7984 16 6 3.4765 4.7564 -2.9380 17 6 4.7093 4.7763 -3.5655 18 6 5.7811 4.1177 -2.9846 19 17 7.3432 4.1196 -3.7421 20 6 5.5725 3.4500 -1.7704 21 6 6.6459 2.7540 -1.1268 22 7 7.4969 2.2011 -0.6192 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 4.6194 6.4856 0.1035 33 1 2.6426 5.2707 -3.3923 34 1 4.8353 5.3009 -4.5011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:36 Heat of formation + Delta-G solvation = 59.775042 kcal Electronic energy + Delta-G solvation = -19599.294529 eV Core-core repulsion = 16558.292476 eV Total energy + Delta-G solvation = -3041.002053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.09152 -38.16704 -37.56822 -37.28136 -35.58171 -33.36608 -32.94397 -31.46750 -29.32654 -26.51121 -25.29289 -24.47842 -22.58076 -21.74859 -20.07239 -19.50952 -17.68907 -17.32596 -16.84218 -16.26456 -15.70906 -15.45398 -14.99231 -14.95327 -14.73791 -14.29820 -13.85520 -13.78447 -13.73184 -13.42774 -13.33690 -13.12447 -12.94488 -12.85098 -12.53868 -12.28793 -12.13611 -11.96036 -11.89299 -11.67417 -11.31769 -11.00896 -10.26667 -10.18489 -9.63195 -9.19694 -7.96826 -5.45217 -0.11636 0.45932 0.92918 1.39910 1.44301 1.48519 1.79880 2.19724 2.38886 2.93927 3.13385 3.19666 3.31198 4.03075 4.12581 4.18319 4.32488 4.40057 4.47343 4.55269 4.57244 4.75493 4.90681 5.02946 5.04837 5.06213 5.09641 5.18971 5.41662 5.50040 5.52134 5.62508 5.71688 6.13157 6.59205 7.02057 7.43317 7.71514 8.00103 9.02960 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.008344 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.459745 B = 3354.899417 C = 4421.527497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.121 4.121 4 C 0.150 3.850 5 N -0.569 5.569 6 C -0.261 4.261 7 H 0.086 0.914 8 C -0.038 4.038 9 N -0.903 5.903 10 Si 0.954 3.046 11 H -0.299 1.299 12 H -0.289 1.289 13 H -0.268 1.268 14 C 0.532 3.468 15 N -0.486 5.486 16 C 0.159 3.841 17 C -0.189 4.189 18 C 0.049 3.951 19 Cl -0.058 7.058 20 C -0.134 4.134 21 C 0.297 3.703 22 N -0.468 5.468 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.254 0.746 33 H 0.191 0.809 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -3.916 -8.886 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.161 4.161 4 C 0.026 3.974 5 N -0.288 5.288 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.234 4.234 9 N -0.547 5.547 10 Si 0.784 3.216 11 H -0.227 1.227 12 H -0.215 1.215 13 H -0.193 1.193 14 C 0.301 3.699 15 N -0.197 5.197 16 C -0.003 4.003 17 C -0.210 4.210 18 C 0.012 3.988 19 Cl -0.029 7.029 20 C -0.145 4.145 21 C -0.017 4.017 22 N -0.145 5.145 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.208 0.792 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.796 -4.621 -7.663 9.721 hybrid contribution 1.219 1.146 0.502 1.747 sum -2.578 -3.475 -7.161 8.367 Atomic orbital electron populations 1.21717 0.95080 1.01956 1.01547 1.21466 0.96574 0.95459 1.02052 1.21974 0.96033 0.96918 1.01141 1.21125 0.93796 0.82334 1.00181 1.41563 1.75633 1.11332 1.00301 1.19517 1.42255 0.91544 0.85532 0.89616 1.25331 1.01635 0.96345 1.00122 1.69685 1.48295 1.07307 1.29420 0.85429 0.77727 0.77846 0.80642 1.22693 1.21546 1.19276 1.17414 0.85104 0.82782 0.84552 1.67800 1.35599 1.07536 1.08793 1.23281 0.96581 0.91856 0.88632 1.22093 0.91539 1.03256 1.04085 1.21335 0.88086 0.97452 0.91973 1.98357 1.26659 1.97229 1.80627 1.17600 0.92043 1.07507 0.97376 1.25275 0.91990 0.92322 0.92081 1.80924 1.11953 1.11811 1.09802 0.93351 0.92988 0.91407 0.91600 0.91875 0.93871 0.93076 0.93172 0.92335 0.93516 0.79187 0.80375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.12 -3.06 5.93 30.59 0.18 -2.87 16 3 C -0.12 -4.16 5.54 30.59 0.17 -3.99 16 4 C 0.15 5.81 5.65 86.38 0.49 6.29 16 5 N -0.57 -26.67 2.00 -517.07 -1.03 -27.70 16 6 C -0.26 -13.49 9.74 84.05 0.82 -12.67 16 7 H 0.09 4.38 7.86 -2.91 -0.02 4.36 16 8 C -0.04 -1.98 5.29 84.89 0.45 -1.53 16 9 N -0.90 -48.14 10.29 21.65 0.22 -47.92 16 10 Si 0.95 44.55 29.58 68.60 2.03 46.57 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.53 23.88 3.62 133.65 0.48 24.37 16 15 N -0.49 -20.32 9.32 -192.42 -1.79 -22.11 16 16 C 0.16 5.08 11.16 84.72 0.95 6.02 16 17 C -0.19 -5.48 9.91 22.37 0.22 -5.26 16 18 C 0.05 1.73 6.40 22.81 0.15 1.87 16 19 Cl -0.06 -1.80 28.18 -2.72 -0.08 -1.88 16 20 C -0.13 -5.74 5.74 -20.99 -0.12 -5.86 16 21 C 0.30 13.55 14.00 88.35 1.24 14.79 16 22 N -0.47 -21.96 18.53 18.99 0.35 -21.60 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 31 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 32 H 0.25 13.49 8.32 -92.71 -0.77 12.72 16 33 H 0.19 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -61.31 317.47 6.54 -54.77 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.11 Total: 1.30 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 5.73 Total: 18.58 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -2.25 Total: -119.35 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -61.31 6.54 -54.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.542 kcal (2) G-P(sol) polarization free energy of solvation -61.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds