Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33630 * 122.75393 * 2 1 4 4 S 1.76196 * 107.92781 * 180.02562 * 3 2 1 5 5 C 1.70973 * 90.28124 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91817 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46995 * 270.02574 * 6 5 4 8 8 C 1.35320 * 125.86925 * 124.99706 * 7 6 5 9 9 C 1.35339 * 106.17716 * 180.02562 * 8 7 6 10 10 C 1.50697 * 126.75399 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47276 * 94.99868 * 10 9 8 12 12 C 1.36935 * 119.99938 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 10 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99869 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47028 * 60.00888 * 16 14 12 18 18 H 1.48503 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47412 * 300.00497 * 16 14 12 20 20 N 1.33775 * 106.49993 * 0.26185 * 9 8 7 21 21 N 1.28641 * 108.88249 * 359.56393 * 20 9 8 22 22 N 1.29022 * 110.16907 * 0.24436 * 5 4 3 23 23 H 1.09000 * 109.47308 * 89.99213 * 1 2 3 24 24 H 1.09004 * 109.47183 * 210.00005 * 1 2 3 25 25 H 1.09000 * 109.46759 * 329.99252 * 1 2 3 26 26 H 1.08010 * 126.03807 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47322 * 150.02640 * 6 5 4 28 28 H 1.09001 * 109.46978 * 30.01844 * 6 5 4 29 29 H 1.08005 * 126.90965 * 0.05455 * 8 7 6 30 30 H 1.09004 * 109.47205 * 334.99843 * 10 9 8 31 31 H 1.09005 * 109.47240 * 215.00052 * 10 9 8 32 32 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 33 33 H 0.96996 * 119.99743 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1238 0.0000 4 16 3.9333 0.6730 -0.0007 5 6 3.5039 -0.9820 -0.0018 6 6 4.4834 -2.1273 -0.0033 7 7 4.8002 -2.4969 -1.3851 8 6 6.0399 -2.5640 -1.9235 9 6 5.8712 -2.9402 -3.2126 10 6 6.9543 -3.1563 -4.2379 11 7 7.3121 -4.5764 -4.2784 12 6 8.2813 -5.0139 -5.1411 13 1 8.7788 -4.3129 -5.7950 14 6 8.6208 -6.3594 -5.1791 15 7 8.0108 -7.2146 -4.3861 16 14 9.9424 -6.9563 -6.3566 17 1 11.2240 -6.2716 -6.0505 18 1 10.1156 -8.4232 -6.2036 19 1 9.5378 -6.6489 -7.7518 20 7 4.5537 -3.0774 -3.3991 21 7 3.9473 -2.8131 -2.2957 22 7 2.2199 -1.1084 -0.0067 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.8392 2.1308 -0.0004 27 1 4.0433 -2.9824 0.5097 28 1 5.3961 -1.8254 0.5104 29 1 6.9757 -2.3590 -1.4247 30 1 7.8317 -2.5680 -3.9692 31 1 6.5940 -2.8444 -5.2183 32 1 6.8626 -5.2066 -3.6940 33 1 8.2478 -8.1548 -4.4129 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330793672.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = 163.357512 kcal Electronic energy + Delta-G solvation = -18206.504515 eV Core-core repulsion = 15204.330593 eV Total energy + Delta-G solvation = -3002.173923 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.94718 -40.21908 -35.56105 -34.47226 -32.25880 -31.77604 -29.88029 -28.82824 -27.86234 -25.76342 -23.86792 -22.78706 -21.62401 -20.61067 -20.14300 -18.10922 -17.42212 -16.98409 -16.50075 -15.27503 -15.09576 -14.64029 -14.50367 -14.29380 -13.83291 -13.57123 -13.18567 -12.91288 -12.82353 -12.75587 -12.54239 -11.89637 -11.69289 -11.19639 -10.87181 -10.77015 -10.43624 -10.19359 -10.08334 -9.83217 -9.81195 -9.68693 -9.15176 -8.85520 -8.81142 -6.88891 -5.70872 -3.00573 0.18439 0.92023 1.31236 1.82471 2.16703 2.73550 2.94666 3.48385 3.51716 3.52615 3.53967 4.12047 4.53155 4.65352 4.74710 4.77945 4.84891 4.89466 5.27643 5.29003 5.31987 5.49051 5.52143 5.65559 5.83522 5.87621 6.20649 6.42647 6.68085 6.72082 6.80908 7.35888 7.73321 8.46392 8.87246 9.58016 10.13943 10.50009 11.51860 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.047034 B = 0.003074 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.172741 B = 9106.532074 C = 9274.422670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.253 4.253 4 S 0.145 5.855 5 C 0.020 3.980 6 C 0.201 3.799 7 N -0.303 5.303 8 C -0.045 4.045 9 C -0.003 4.003 10 C 0.233 3.767 11 N -0.726 5.726 12 C -0.240 4.240 13 H 0.073 0.927 14 C -0.013 4.013 15 N -0.932 5.932 16 Si 0.910 3.090 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.285 1.285 20 N -0.253 5.253 21 N -0.079 5.079 22 N -0.435 5.435 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.180 0.820 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.191 0.809 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.386 0.614 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.115 19.378 15.046 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.392 4.392 4 S 0.399 5.601 5 C -0.258 4.258 6 C 0.076 3.924 7 N -0.098 5.098 8 C -0.195 4.195 9 C -0.141 4.141 10 C 0.104 3.896 11 N -0.371 5.371 12 C -0.371 4.371 13 H 0.091 0.909 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.741 3.259 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 N -0.121 5.121 21 N -0.058 5.058 22 N -0.150 5.150 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.197 0.803 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.208 0.792 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.219 0.781 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.730 19.187 14.604 26.392 hybrid contribution 0.754 -0.405 -0.018 0.856 sum -9.975 18.782 14.585 25.787 Atomic orbital electron populations 1.20387 0.86690 1.03431 1.03370 1.20375 0.98574 0.86173 1.01406 1.26962 0.95035 1.04248 1.12997 1.84014 1.07319 1.02023 1.66719 1.26639 0.94348 0.97919 1.06941 1.20306 0.97673 0.95325 0.79081 1.47182 1.05712 1.45986 1.10895 1.23447 0.89977 1.10189 0.95871 1.22491 0.93440 1.03220 0.94905 1.18949 0.89447 0.88645 0.92570 1.42301 1.45599 1.01645 1.47520 1.19188 1.11853 0.92176 1.13927 0.90943 1.24762 1.00255 0.95987 0.99909 1.69672 1.44668 1.02502 1.41212 0.86231 0.81463 0.77541 0.80712 1.21241 1.21741 1.21201 1.75148 1.05725 1.15900 1.15352 1.78411 1.18134 1.16582 0.92642 1.66052 1.04180 1.31805 1.12936 0.90302 0.90299 0.90653 0.80260 0.85519 0.85479 0.79166 0.94436 0.94353 0.78071 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.07 0.69 6.74 -84.23 -0.57 0.12 16 3 C -0.25 -2.12 11.13 29.12 0.32 -1.79 16 4 S 0.14 1.24 23.18 -107.50 -2.49 -1.25 16 5 C 0.02 0.22 6.76 -13.46 -0.09 0.13 16 6 C 0.20 1.98 7.04 -5.19 -0.04 1.95 16 7 N -0.30 -4.43 3.43 -62.44 -0.21 -4.65 16 8 C -0.05 -0.68 11.50 -17.05 -0.20 -0.88 16 9 C 0.00 -0.06 6.61 -82.78 -0.55 -0.61 16 10 C 0.23 4.97 6.82 -5.20 -0.04 4.94 16 11 N -0.73 -19.26 5.59 -61.08 -0.34 -19.60 16 12 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 13 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 15 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 16 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 N -0.25 -5.39 12.41 33.28 0.41 -4.98 16 21 N -0.08 -1.48 12.92 60.35 0.78 -0.70 16 22 N -0.43 -5.40 10.53 -8.06 -0.08 -5.48 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.13 0.71 8.07 -51.93 -0.42 0.29 16 29 H 0.19 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.39 11.04 7.66 -40.82 -0.31 10.73 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -36.42 311.21 -6.23 -42.65 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.66 Total: 3.78 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.03 Total: -3.85 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: 1.28 Total: -63.69 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.49 Total: -1.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.42 -6.23 -42.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330793672.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.008 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds