Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33630 * 122.75393 * 2 1 4 4 S 1.76196 * 107.92781 * 180.02562 * 3 2 1 5 5 C 1.70973 * 90.28124 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91817 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46995 * 270.02574 * 6 5 4 8 8 C 1.35320 * 125.86925 * 124.99706 * 7 6 5 9 9 C 1.35339 * 106.17716 * 180.02562 * 8 7 6 10 10 C 1.50697 * 126.75399 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47276 * 94.99868 * 10 9 8 12 12 C 1.36935 * 119.99938 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 10 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99869 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47028 * 60.00888 * 16 14 12 18 18 H 1.48503 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47412 * 300.00497 * 16 14 12 20 20 N 1.33775 * 106.49993 * 0.26185 * 9 8 7 21 21 N 1.28641 * 108.88249 * 359.56393 * 20 9 8 22 22 N 1.29022 * 110.16907 * 0.24436 * 5 4 3 23 23 H 1.09000 * 109.47308 * 89.99213 * 1 2 3 24 24 H 1.09004 * 109.47183 * 210.00005 * 1 2 3 25 25 H 1.09000 * 109.46759 * 329.99252 * 1 2 3 26 26 H 1.08010 * 126.03807 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47322 * 150.02640 * 6 5 4 28 28 H 1.09001 * 109.46978 * 30.01844 * 6 5 4 29 29 H 1.08005 * 126.90965 * 0.05455 * 8 7 6 30 30 H 1.09004 * 109.47205 * 334.99843 * 10 9 8 31 31 H 1.09005 * 109.47240 * 215.00052 * 10 9 8 32 32 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 33 33 H 0.96996 * 119.99743 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1238 0.0000 4 16 3.9333 0.6730 -0.0007 5 6 3.5039 -0.9820 -0.0018 6 6 4.4834 -2.1273 -0.0033 7 7 4.8002 -2.4969 -1.3851 8 6 6.0399 -2.5640 -1.9235 9 6 5.8712 -2.9402 -3.2126 10 6 6.9543 -3.1563 -4.2379 11 7 7.3121 -4.5764 -4.2784 12 6 8.2813 -5.0139 -5.1411 13 1 8.7788 -4.3129 -5.7950 14 6 8.6208 -6.3594 -5.1791 15 7 8.0108 -7.2146 -4.3861 16 14 9.9424 -6.9563 -6.3566 17 1 11.2240 -6.2716 -6.0505 18 1 10.1156 -8.4232 -6.2036 19 1 9.5378 -6.6489 -7.7518 20 7 4.5537 -3.0774 -3.3991 21 7 3.9473 -2.8131 -2.2957 22 7 2.2199 -1.1084 -0.0067 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 1.8392 2.1308 -0.0004 27 1 4.0433 -2.9824 0.5097 28 1 5.3961 -1.8254 0.5104 29 1 6.9757 -2.3590 -1.4247 30 1 7.8317 -2.5680 -3.9692 31 1 6.5940 -2.8444 -5.2183 32 1 6.8626 -5.2066 -3.6940 33 1 8.2478 -8.1548 -4.4129 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330793672.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = 136.011451 kcal Electronic energy + Delta-G solvation = -18207.690329 eV Core-core repulsion = 15204.330593 eV Total energy + Delta-G solvation = -3003.359737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.24727 -40.94295 -37.01020 -35.99624 -33.71193 -33.01627 -31.58587 -29.72971 -28.53061 -27.57218 -24.85892 -24.65137 -22.82931 -21.95349 -20.86721 -19.38751 -18.78230 -18.27457 -17.55136 -16.65875 -16.08558 -15.99981 -15.80383 -15.46681 -15.09815 -14.87018 -14.47671 -14.26313 -13.80781 -13.57056 -13.39414 -13.25291 -13.00771 -12.71472 -12.49917 -12.33344 -12.11670 -11.87915 -11.80703 -11.26415 -10.93220 -10.70484 -10.51196 -10.21095 -9.81960 -9.00641 -7.91688 -5.22231 -0.53419 0.24150 0.61113 0.63383 1.27743 1.46582 1.52519 1.55136 1.61185 1.89449 2.61046 2.81743 3.29716 3.41229 3.61620 3.87330 4.01575 4.15494 4.19930 4.22273 4.27109 4.29034 4.56059 4.72858 4.76112 4.86730 4.90462 5.14666 5.18550 5.28041 5.52188 5.60039 6.27802 6.66485 7.34575 7.52080 8.06176 8.32131 9.32163 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.047034 B = 0.003074 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.172741 B = 9106.532074 C = 9274.422670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.039 3.961 3 C -0.246 4.246 4 S 0.184 5.816 5 C -0.006 4.006 6 C 0.190 3.810 7 N -0.287 5.287 8 C -0.013 4.013 9 C -0.039 4.039 10 C 0.237 3.763 11 N -0.740 5.740 12 C -0.244 4.244 13 H 0.085 0.915 14 C -0.078 4.078 15 N -0.974 5.974 16 Si 0.980 3.020 17 H -0.270 1.270 18 H -0.298 1.298 19 H -0.280 1.280 20 N -0.301 5.301 21 N -0.106 5.106 22 N -0.472 5.472 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.210 0.790 27 H 0.132 0.868 28 H 0.177 0.823 29 H 0.239 0.761 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.371 0.629 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 21.575 16.147 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.386 4.386 4 S 0.439 5.561 5 C -0.284 4.284 6 C 0.067 3.933 7 N -0.082 5.082 8 C -0.164 4.164 9 C -0.178 4.178 10 C 0.109 3.891 11 N -0.382 5.382 12 C -0.376 4.376 13 H 0.103 0.897 14 C -0.270 4.270 15 N -0.624 5.624 16 Si 0.808 3.192 17 H -0.196 1.196 18 H -0.224 1.224 19 H -0.206 1.206 20 N -0.168 5.168 21 N -0.084 5.084 22 N -0.188 5.188 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.227 0.773 27 H 0.150 0.850 28 H 0.194 0.806 29 H 0.255 0.745 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.202 0.798 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.493 21.442 15.712 28.227 hybrid contribution 0.299 -0.923 -0.260 1.004 sum -9.194 20.519 15.452 27.282 Atomic orbital electron populations 1.20447 0.85452 1.04389 1.03395 1.20782 0.99732 0.86326 1.02518 1.27399 0.95046 1.05186 1.10930 1.83797 1.07014 0.99898 1.65435 1.26755 0.94221 0.99385 1.08011 1.20911 1.00031 0.95766 0.76584 1.47530 1.05095 1.43704 1.11870 1.23987 0.91444 1.06682 0.94277 1.22356 0.92619 1.06227 0.96558 1.18972 0.91094 0.86086 0.92956 1.42518 1.45158 1.03629 1.46932 1.19674 1.11620 0.92606 1.13683 0.89719 1.25657 1.03001 0.96308 1.02048 1.69853 1.46739 1.02435 1.43403 0.85121 0.79139 0.76424 0.78510 1.19583 1.22443 1.20591 1.75071 1.06986 1.17571 1.17171 1.78315 1.19088 1.17997 0.93048 1.66062 1.05334 1.33543 1.13863 0.90687 0.91133 0.87946 0.77331 0.85041 0.80585 0.74509 0.91523 0.95616 0.79837 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.31 71.24 0.73 -0.35 16 2 C 0.04 0.75 6.74 41.52 0.28 1.03 16 3 C -0.25 -3.55 11.13 66.77 0.74 -2.81 16 4 S 0.18 2.68 23.18 -56.49 -1.31 1.37 16 5 C -0.01 -0.13 6.76 88.52 0.60 0.47 16 6 C 0.19 3.30 7.04 85.63 0.60 3.90 16 7 N -0.29 -7.94 3.43 -351.46 -1.21 -9.15 16 8 C -0.01 -0.35 11.50 83.49 0.96 0.61 16 9 C -0.04 -1.51 6.61 41.59 0.28 -1.24 16 10 C 0.24 9.98 6.82 85.63 0.58 10.57 16 11 N -0.74 -39.41 5.59 -347.17 -1.94 -41.36 16 12 C -0.24 -13.87 9.99 84.04 0.84 -13.03 16 13 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 14 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 15 N -0.97 -61.59 13.06 21.65 0.28 -61.31 16 16 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 N -0.30 -13.04 12.41 -48.61 -0.60 -13.64 16 21 N -0.11 -4.00 12.92 37.02 0.48 -3.52 16 22 N -0.47 -11.46 10.53 -179.41 -1.89 -13.34 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 27 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.18 1.21 8.07 -2.39 -0.02 1.19 16 29 H 0.24 4.08 8.06 -2.91 -0.02 4.05 16 30 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.37 21.65 7.66 -92.71 -0.71 20.94 16 33 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -81.53 311.21 2.36 -79.17 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.43 Total: 18.09 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 6.08 Total: -4.98 kcal Atomic # 7 Polarization: -137.45 SS G_CDS: -4.88 Total: -142.32 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.37 kcal Total: -81.53 2.36 -79.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330793672.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.181 kcal (2) G-P(sol) polarization free energy of solvation -81.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds