Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47274 * 2 1 4 4 H 1.09000 * 109.47302 * 55.00045 * 3 2 1 5 5 C 1.50699 * 109.47186 * 175.00587 * 3 2 1 6 6 H 1.07998 * 120.00646 * 119.99995 * 5 3 2 7 7 C 1.37882 * 119.99408 * 299.99630 * 5 3 2 8 8 N 1.31514 * 120.00039 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99617 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47150 * 60.00020 * 9 7 5 11 11 H 1.48497 * 109.46854 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47049 * 299.99613 * 9 7 5 13 13 N 1.46509 * 109.46771 * 295.00102 * 3 2 1 14 14 C 1.38647 * 119.99739 * 85.00441 * 13 3 2 15 15 N 1.32542 * 119.55015 * 0.02562 * 14 13 3 16 16 C 1.31659 * 121.79521 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.66787 * 180.02562 * 16 15 14 18 18 C 1.39584 * 120.65839 * 0.02562 * 16 15 14 19 19 C 1.43201 * 120.47574 * 180.02562 * 18 16 15 20 20 N 7.86534 * 40.95305 * 340.87849 * 2 1 3 21 21 C 1.40337 * 119.04028 * 359.97438 * 18 16 15 22 22 C 1.37995 * 118.36276 * 0.02562 * 21 18 16 23 23 Cl 1.73602 * 120.38226 * 179.97438 * 22 21 18 24 24 H 1.08994 * 109.47140 * 59.99840 * 1 2 3 25 25 H 1.08995 * 109.47194 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46825 * 299.99852 * 1 2 3 27 27 H 1.08995 * 109.46841 * 239.99747 * 2 1 3 28 28 H 1.09002 * 109.46872 * 120.00039 * 2 1 3 29 29 H 0.97006 * 119.99433 * 180.02562 * 8 7 5 30 30 H 0.96996 * 119.99592 * 264.99819 * 13 3 2 31 31 H 1.08996 * 109.46884 * 90.00032 * 17 16 15 32 32 H 1.09003 * 109.46740 * 210.00296 * 17 16 15 33 33 H 1.08999 * 109.47115 * 330.00144 * 17 16 15 34 34 H 1.07997 * 120.82063 * 180.27471 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8811 1.3816 10 1 6.4996 2.2813 1.3819 11 1 6.3979 0.2166 2.6501 12 1 6.5975 0.1471 0.2347 13 7 1.6525 2.0974 -1.2519 14 6 0.4002 2.6807 -1.3702 15 7 -0.4389 2.6409 -0.3451 16 6 -1.6381 3.1807 -0.4088 17 6 -2.5534 3.1080 0.7863 18 6 -2.0701 3.8196 -1.5723 19 6 -3.3750 4.4059 -1.6372 20 7 -4.4102 4.8708 -1.6887 21 6 -1.2068 3.8800 -2.6770 22 6 0.0410 3.3011 -2.5663 23 17 1.1506 3.3446 -3.9007 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8294 -0.0612 2.9497 30 1 2.2719 2.1231 -1.9978 31 1 -2.3922 3.9795 1.4207 32 1 -3.5899 3.0903 0.4494 33 1 -2.3399 2.2017 1.3528 34 1 -1.5098 4.3710 -3.5899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292662337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 40.916543 kcal Electronic energy + Delta-G solvation = -19239.605744 eV Core-core repulsion = 16197.785925 eV Total energy + Delta-G solvation = -3041.819819 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59882 -38.42498 -37.58317 -37.21714 -34.91807 -33.84401 -33.03371 -31.78295 -29.08654 -28.18326 -25.29398 -24.07626 -23.53512 -21.47675 -20.08744 -19.13175 -18.05386 -17.63857 -16.69589 -16.35169 -15.80862 -15.54812 -15.15433 -14.80936 -14.43754 -14.24567 -14.05965 -13.99033 -13.84832 -13.49534 -13.32586 -13.10494 -13.07904 -12.81242 -12.69082 -12.54271 -12.14104 -12.07331 -11.98883 -11.51240 -11.17826 -10.90759 -10.51723 -10.41091 -10.26218 -8.54548 -8.13070 -6.28465 -0.17673 0.14790 1.07750 1.46833 1.47347 1.54554 1.74061 2.01292 2.28522 2.50387 2.86526 2.96877 3.16932 3.39939 3.67269 3.86378 4.32641 4.51833 4.62940 4.67902 4.69007 4.75573 4.84509 4.90513 5.03475 5.16884 5.33088 5.42062 5.54067 5.63530 5.75168 5.90462 6.10041 6.31266 6.52136 6.61111 6.79117 7.25579 7.42842 8.90821 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.005441 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.750068 B = 5144.405136 C = 6008.796773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.122 4.122 3 C 0.285 3.715 4 H 0.028 0.972 5 C -0.554 4.554 6 H 0.061 0.939 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.679 5.679 14 C 0.441 3.559 15 N -0.537 5.537 16 C 0.239 3.761 17 C -0.111 4.111 18 C -0.166 4.166 19 C 0.301 3.699 20 N -0.465 5.465 21 C 0.043 3.957 22 C -0.186 4.186 23 Cl -0.052 7.052 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 4.291 -7.593 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.045 0.955 5 C -0.592 4.592 6 H 0.079 0.921 7 C -0.175 4.175 8 N -0.544 5.544 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.303 5.303 14 C 0.199 3.801 15 N -0.257 5.257 16 C 0.093 3.907 17 C -0.168 4.168 18 C -0.176 4.176 19 C -0.013 4.013 20 N -0.142 5.142 21 C 0.016 3.984 22 C -0.221 4.221 23 Cl -0.023 7.023 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.159 4.358 -6.679 11.409 hybrid contribution 1.692 0.021 -0.847 1.892 sum -6.467 4.379 -7.526 10.846 Atomic orbital electron populations 1.21674 0.96162 0.98900 1.00918 1.21791 0.94592 0.98951 1.00751 1.18517 0.93064 0.89345 0.80893 0.95464 1.21528 0.92034 1.39165 1.06513 0.92084 1.25544 1.02385 0.94413 0.95120 1.69991 1.36665 1.38034 1.09671 0.85607 0.80255 0.78299 0.77429 1.19921 1.21034 1.19582 1.45542 1.11531 1.55056 1.18161 1.18556 0.87039 0.86627 0.87842 1.67626 1.04537 1.25076 1.28428 1.21524 0.89648 0.85773 0.93753 1.20929 0.96607 1.05149 0.94104 1.16232 0.90521 1.13395 0.97475 1.25041 0.91780 0.91948 0.92562 1.81265 1.12253 1.11796 1.08861 1.21304 0.88484 0.90677 0.97971 1.20914 0.95752 1.14418 0.91029 1.98342 1.61855 1.97747 1.44388 0.94132 0.94507 0.93113 0.95464 0.90864 0.92577 0.75433 0.88287 0.89586 0.89452 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.44 71.98 0.61 -3.96 16 2 C -0.12 -5.47 5.45 30.60 0.17 -5.30 16 3 C 0.28 13.16 2.24 44.24 0.10 13.26 16 4 H 0.03 1.44 7.52 -2.39 -0.02 1.42 16 5 C -0.55 -27.88 8.73 25.60 0.22 -27.66 16 6 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 7 C 0.03 1.35 5.29 84.66 0.45 1.80 16 8 N -0.91 -48.47 11.29 21.45 0.24 -48.23 16 9 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 N -0.68 -25.97 5.10 -328.02 -1.67 -27.64 16 14 C 0.44 14.81 6.03 133.22 0.80 15.61 16 15 N -0.54 -17.96 6.26 -180.29 -1.13 -19.09 16 16 C 0.24 6.44 6.82 42.91 0.29 6.73 16 17 C -0.11 -2.41 9.77 71.24 0.70 -1.71 16 18 C -0.17 -3.95 5.75 -21.20 -0.12 -4.07 16 19 C 0.30 7.22 13.82 88.33 1.22 8.44 16 20 N -0.46 -12.64 18.54 19.00 0.35 -12.29 16 21 C 0.04 0.96 9.69 22.72 0.22 1.18 16 22 C -0.19 -5.06 6.35 22.50 0.14 -4.92 16 23 Cl -0.05 -1.28 27.59 -2.72 -0.08 -1.35 16 24 H 0.04 1.48 5.60 -2.39 -0.01 1.46 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.98 7.66 -2.39 -0.02 1.96 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 3.73 5.95 -2.39 -0.01 3.71 16 29 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 30 H 0.41 14.69 7.17 -92.71 -0.66 14.02 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.63 7.07 -2.39 -0.02 1.62 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -54.94 305.67 5.03 -49.92 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.48 Total: 16.55 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.80 Total: -0.59 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -2.21 Total: -107.25 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -54.94 5.03 -49.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292662337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.832 kcal (2) G-P(sol) polarization free energy of solvation -54.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds