Wall clock time and date at job start Wed Apr 15 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48508 * 109.47394 * 329.99535 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 S 1.81391 * 109.47235 * 299.99569 * 12 2 1 14 14 C 1.76193 * 103.00267 * 180.02562 * 13 12 2 15 15 C 1.38922 * 120.16445 * 359.97438 * 14 13 12 16 16 C 1.38036 * 120.13070 * 179.97438 * 15 14 13 17 17 C 1.38498 * 120.46974 * 0.02562 * 16 15 14 18 18 C 1.38102 * 120.33559 * 0.03700 * 17 16 15 19 19 F 1.35101 * 120.06744 * 179.97438 * 18 17 16 20 20 C 1.39975 * 119.85917 * 359.68815 * 18 17 16 21 21 C 1.43198 * 120.23618 * 180.31401 * 20 18 17 22 22 N 6.22929 * 79.77892 * 74.94797 * 2 1 3 23 23 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 24 24 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 25 25 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 28 28 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 29 29 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 31 31 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 32 32 H 1.07999 * 119.93502 * 359.97438 * 15 14 13 33 33 H 1.07995 * 119.76505 * 180.02562 * 16 15 14 34 34 H 1.08000 * 119.83236 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7569 -3.7119 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1338 2.7304 14 6 2.1129 -0.8234 4.0452 15 6 2.8985 -1.9348 3.7667 16 6 3.4295 -2.6839 4.7973 17 6 3.1852 -2.3372 6.1158 18 6 2.4059 -1.2370 6.4148 19 9 2.1707 -0.9040 7.7028 20 6 1.8653 -0.4641 5.3805 21 6 1.0617 0.6823 5.6813 22 7 0.4246 1.5920 5.9201 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7090 1.1613 -3.4844 30 1 1.6764 -1.7489 1.2493 31 1 3.1299 -0.7217 1.2492 32 1 3.0942 -2.2132 2.7417 33 1 4.0397 -3.5465 4.5740 34 1 3.6061 -2.9304 6.9141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575139150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:36 Heat of formation + Delta-G solvation = -1.160989 kcal Electronic energy + Delta-G solvation = -18561.634534 eV Core-core repulsion = 15500.113842 eV Total energy + Delta-G solvation = -3061.520693 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.19760 -39.13826 -36.41949 -36.10513 -31.74819 -31.60107 -30.92163 -26.54781 -25.77789 -25.24917 -24.19687 -23.07601 -19.64544 -18.89671 -17.87957 -16.73977 -16.17271 -15.95667 -15.66420 -15.27065 -14.79608 -14.00571 -13.93210 -13.81738 -13.46685 -13.30329 -12.88396 -12.80543 -12.37831 -12.37537 -11.98147 -11.55870 -11.50607 -11.31808 -10.95804 -10.76048 -10.43758 -10.22951 -9.98194 -9.85281 -9.64719 -9.58799 -9.03504 -8.77538 -8.47907 -7.25744 -6.10129 -4.22741 0.47615 0.87598 1.64916 2.61930 2.81868 2.85027 3.21472 3.29574 3.31075 3.59261 3.74365 3.97952 4.31189 4.58181 4.86754 5.00470 5.16207 5.17336 5.58139 5.71260 5.76848 5.81661 5.84462 6.06217 6.30955 6.48666 6.66423 6.81164 6.94933 6.98073 7.25330 7.48155 7.50140 7.60704 7.92755 8.03650 8.26709 8.76142 9.43530 10.90873 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.004333 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.972570 B = 6460.225849 C = 7184.126069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 C -0.136 4.136 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.084 4.084 13 S -0.077 6.077 14 C -0.016 4.016 15 C -0.151 4.151 16 C -0.039 4.039 17 C -0.177 4.177 18 C 0.163 3.837 19 F -0.129 7.129 20 C -0.063 4.063 21 C 0.256 3.744 22 N -0.400 5.400 23 H 0.018 0.982 24 H 0.087 0.913 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.018 0.982 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -7.298 12.673 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.081 3.919 3 C -0.194 4.194 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.231 4.231 13 S 0.176 5.824 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.060 4.060 17 C -0.199 4.199 18 C 0.140 3.860 19 F -0.108 7.108 20 C -0.076 4.076 21 C -0.060 4.060 22 N -0.076 5.076 23 H 0.037 0.963 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.106 0.894 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.314 -4.675 12.828 14.049 hybrid contribution 1.359 -1.945 -0.737 2.484 sum 4.673 -6.620 12.090 14.554 Atomic orbital electron populations 1.21913 0.97218 0.99447 1.00841 1.18020 0.93081 0.92557 0.88291 1.21911 0.98624 0.98031 1.00839 1.20949 1.32096 1.12266 0.89590 0.92453 1.24885 0.94770 0.94868 0.98850 1.69807 1.36162 1.22487 1.23466 0.86555 0.79220 0.79401 0.82579 1.20644 1.21165 1.19914 1.24395 1.03121 1.01973 0.93657 1.86208 1.62034 1.37005 0.97171 1.22361 0.97253 0.97794 0.95956 1.21351 0.99755 0.95309 1.01123 1.21115 0.95783 0.98020 0.91110 1.20961 1.02621 0.97923 0.98436 1.17466 0.96850 0.94479 0.77245 1.91534 1.92657 1.91983 1.34607 1.15435 1.05278 0.94971 0.91905 1.25112 0.93628 0.92981 0.94244 1.81179 1.09333 1.10250 1.06806 0.96341 0.89424 0.95269 0.95266 0.89423 0.96344 0.92786 0.90057 0.90052 0.83796 0.84103 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.01 37.16 0.30 -2.79 16 2 C 0.08 1.83 0.52 -155.66 -0.08 1.75 16 3 C -0.14 -3.08 8.01 37.16 0.30 -2.78 16 4 C -0.51 -12.48 8.01 -34.44 -0.28 -12.75 16 5 H 0.06 1.37 7.74 -52.48 -0.41 0.96 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.03 9.35 55.43 0.52 -22.51 16 8 Si 0.89 19.76 29.54 -169.99 -5.02 14.73 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C -0.08 -1.51 3.28 37.16 0.12 -1.39 16 13 S -0.08 -1.33 17.97 -107.50 -1.93 -3.26 16 14 C -0.02 -0.23 6.16 -38.49 -0.24 -0.47 16 15 C -0.15 -1.72 9.36 -39.40 -0.37 -2.09 16 16 C -0.04 -0.34 10.02 -39.56 -0.40 -0.73 16 17 C -0.18 -1.57 10.00 -39.54 -0.40 -1.96 16 18 C 0.16 1.90 7.28 -38.98 -0.28 1.62 16 19 F -0.13 -1.58 16.81 2.25 0.04 -1.54 16 20 C -0.06 -0.89 5.77 -106.48 -0.61 -1.50 16 21 C 0.26 4.14 13.93 -22.47 -0.31 3.83 16 22 N -0.40 -7.13 18.54 41.84 0.78 -6.35 16 23 H 0.02 0.38 6.91 -51.93 -0.36 0.03 16 24 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.02 0.38 6.92 -51.93 -0.36 0.02 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.08 1.39 7.75 -51.92 -0.40 0.98 16 31 H 0.08 1.39 7.75 -51.92 -0.40 0.99 16 32 H 0.14 1.58 5.89 -52.49 -0.31 1.27 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -26.72 304.82 -7.06 -33.78 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.69 Total: -1.82 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.34 Total: -17.63 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 1.29 Total: -28.86 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.93 Total: -3.26 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.72 -7.06 -33.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575139150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.623 kcal (2) G-P(sol) polarization free energy of solvation -26.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds