Wall clock time and date at job start Wed Apr 15 2020 11:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48508 * 109.47394 * 329.99535 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 S 1.81391 * 109.47235 * 299.99569 * 12 2 1 14 14 C 1.76193 * 103.00267 * 180.02562 * 13 12 2 15 15 C 1.38922 * 120.16445 * 359.97438 * 14 13 12 16 16 C 1.38036 * 120.13070 * 179.97438 * 15 14 13 17 17 C 1.38498 * 120.46974 * 0.02562 * 16 15 14 18 18 C 1.38102 * 120.33559 * 0.03700 * 17 16 15 19 19 F 1.35101 * 120.06744 * 179.97438 * 18 17 16 20 20 C 1.39975 * 119.85917 * 359.68815 * 18 17 16 21 21 C 1.43198 * 120.23618 * 180.31401 * 20 18 17 22 22 N 6.22929 * 79.77892 * 74.94797 * 2 1 3 23 23 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 24 24 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 25 25 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 28 28 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 29 29 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 31 31 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 32 32 H 1.07999 * 119.93502 * 359.97438 * 15 14 13 33 33 H 1.07995 * 119.76505 * 180.02562 * 16 15 14 34 34 H 1.08000 * 119.83236 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7569 -3.7119 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1338 2.7304 14 6 2.1129 -0.8234 4.0452 15 6 2.8985 -1.9348 3.7667 16 6 3.4295 -2.6839 4.7973 17 6 3.1852 -2.3372 6.1158 18 6 2.4059 -1.2370 6.4148 19 9 2.1707 -0.9040 7.7028 20 6 1.8653 -0.4641 5.3805 21 6 1.0617 0.6823 5.6813 22 7 0.4246 1.5920 5.9201 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7090 1.1613 -3.4844 30 1 1.6764 -1.7489 1.2493 31 1 3.1299 -0.7217 1.2492 32 1 3.0942 -2.2132 2.7417 33 1 4.0397 -3.5465 4.5740 34 1 3.6061 -2.9304 6.9141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575139150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:35 Heat of formation + Delta-G solvation = -12.982702 kcal Electronic energy + Delta-G solvation = -18562.147162 eV Core-core repulsion = 15500.113842 eV Total energy + Delta-G solvation = -3062.033321 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.079 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.11801 -40.06832 -37.93337 -37.58171 -33.55532 -32.54644 -31.88710 -28.05714 -27.61249 -27.14640 -25.18267 -23.97207 -21.12432 -20.21038 -18.83387 -18.00549 -17.67716 -16.89177 -16.83868 -16.63998 -16.11378 -15.46333 -15.22018 -14.86818 -14.79524 -14.54187 -14.40633 -14.06418 -13.82882 -13.52958 -13.21204 -13.15513 -12.89964 -12.71311 -12.67248 -12.36516 -12.25767 -11.99488 -11.47780 -11.40647 -11.26421 -10.76591 -10.50092 -10.37493 -9.95917 -8.50725 -7.99416 -6.17441 -0.47564 0.00684 0.43423 1.38007 1.46891 1.49692 1.56827 1.59215 1.78674 2.48484 2.57622 2.69359 3.04558 3.25011 3.81899 3.97264 4.20913 4.27813 4.27945 4.35937 4.70627 4.72838 4.90154 4.94684 5.03222 5.06963 5.16197 5.17629 5.27823 5.44711 5.62144 5.68409 5.69809 6.06257 6.18529 6.27880 6.39554 6.88511 7.51312 8.99806 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.004333 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.972570 B = 6460.225849 C = 7184.126069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.073 3.927 3 C -0.126 4.126 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.022 3.978 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.265 1.265 12 C -0.066 4.066 13 S -0.131 6.131 14 C -0.024 4.024 15 C -0.150 4.150 16 C -0.017 4.017 17 C -0.151 4.151 18 C 0.157 3.843 19 F -0.134 7.134 20 C -0.084 4.084 21 C 0.266 3.734 22 N -0.445 5.445 23 H 0.024 0.976 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.258 0.742 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.188 0.812 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 -10.350 14.024 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 C -0.184 4.184 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.189 1.189 12 C -0.213 4.213 13 S 0.119 5.881 14 C -0.141 4.141 15 C -0.175 4.175 16 C -0.038 4.038 17 C -0.173 4.173 18 C 0.133 3.867 19 F -0.113 7.113 20 C -0.095 4.095 21 C -0.048 4.048 22 N -0.121 5.121 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.205 0.795 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.495 -7.748 14.204 17.087 hybrid contribution 0.751 -1.091 -1.007 1.664 sum 6.247 -8.839 13.197 17.068 Atomic orbital electron populations 1.21759 0.97932 0.99035 0.99647 1.17997 0.92577 0.92422 0.89888 1.21757 0.98469 0.98493 0.99642 1.21311 1.31628 1.12300 0.90496 0.91870 1.25580 0.95171 0.95512 1.01460 1.69966 1.37320 1.23736 1.23533 0.85677 0.78972 0.78186 0.79476 1.20597 1.21792 1.18945 1.24007 1.03446 1.01667 0.92209 1.86280 1.64013 1.39079 0.98728 1.22105 0.98972 0.98742 0.94233 1.21583 0.98970 0.94435 1.02501 1.21621 0.94197 0.98040 0.89900 1.21465 0.99916 0.96082 0.99791 1.17681 0.97376 0.95114 0.76487 1.91529 1.92787 1.92170 1.34803 1.15600 1.06222 0.94989 0.92719 1.25654 0.93041 0.93014 0.93122 1.81164 1.11004 1.11714 1.08230 0.95729 0.92360 0.95163 0.95146 0.92360 0.95737 0.93261 0.89016 0.89028 0.83205 0.79521 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.01 71.98 0.58 -5.23 16 2 C 0.07 3.24 0.52 -52.93 -0.03 3.21 16 3 C -0.13 -5.80 8.01 71.98 0.58 -5.22 16 4 C -0.52 -25.16 8.01 25.60 0.21 -24.95 16 5 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 6 C 0.02 1.13 5.15 84.65 0.44 1.56 16 7 N -0.91 -48.58 9.35 21.45 0.20 -48.37 16 8 Si 0.95 40.42 29.54 68.60 2.03 42.44 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 C -0.07 -2.30 3.28 71.98 0.24 -2.07 16 13 S -0.13 -4.50 17.97 -56.49 -1.01 -5.51 16 14 C -0.02 -0.63 6.16 22.98 0.14 -0.49 16 15 C -0.15 -2.87 9.36 22.39 0.21 -2.66 16 16 C -0.02 -0.19 10.02 22.28 0.22 0.03 16 17 C -0.15 -1.85 10.00 22.30 0.22 -1.62 16 18 C 0.16 3.19 7.28 22.66 0.16 3.35 16 19 F -0.13 -2.98 16.81 44.97 0.76 -2.23 16 20 C -0.08 -2.22 5.77 -21.07 -0.12 -2.34 16 21 C 0.27 8.72 13.93 88.33 1.23 9.95 16 22 N -0.44 -16.35 18.54 19.00 0.35 -16.00 16 23 H 0.02 1.06 6.91 -2.39 -0.02 1.05 16 24 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 28 H 0.02 1.06 6.92 -2.39 -0.02 1.04 16 29 H 0.26 13.42 8.31 -92.71 -0.77 12.64 16 30 H 0.09 2.97 7.75 -2.39 -0.02 2.95 16 31 H 0.09 2.97 7.75 -2.39 -0.02 2.95 16 32 H 0.15 2.72 5.89 -2.91 -0.02 2.70 16 33 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -60.39 304.82 7.52 -52.87 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.13 Total: 3.27 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.07 Total: -26.47 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.55 Total: -64.37 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.76 Total: -2.23 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -1.01 Total: -5.51 kcal Total: -60.39 7.52 -52.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575139150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.883 kcal (2) G-P(sol) polarization free energy of solvation -60.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds