Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46708 * 2 1 4 4 C 1.53003 * 109.46971 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.36877 * 119.99935 * 85.31645 * 5 4 3 7 7 H 1.07995 * 120.00233 * 230.07193 * 6 5 4 8 8 C 1.38858 * 119.99599 * 50.06936 * 6 5 4 9 9 N 1.31529 * 120.00015 * 356.40913 * 8 6 5 10 10 Si 1.86798 * 119.99619 * 176.40725 * 8 6 5 11 11 H 1.48499 * 109.47142 * 90.00321 * 10 8 6 12 12 H 1.48503 * 109.46835 * 209.99781 * 10 8 6 13 13 H 1.48495 * 109.47164 * 330.00219 * 10 8 6 14 14 C 1.38315 * 120.00233 * 265.32083 * 5 4 3 15 15 N 1.32459 * 119.81648 * 6.15514 * 14 5 4 16 16 C 1.31800 * 121.79437 * 179.74973 * 15 14 5 17 17 C 1.38543 * 121.21205 * 0.53562 * 16 15 14 18 18 Cl 1.73602 * 120.25701 * 179.75959 * 17 16 15 19 19 C 1.38469 * 119.48867 * 359.74167 * 17 16 15 20 20 C 1.39980 * 118.35305 * 359.97438 * 19 17 16 21 21 C 1.43194 * 120.60942 * 179.97438 * 20 19 17 22 22 N 7.17786 * 123.29692 * 9.96663 * 2 1 3 23 23 H 1.09003 * 109.47164 * 60.00445 * 1 2 3 24 24 H 1.09002 * 109.46472 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47186 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.47186 * 240.00015 * 2 1 3 27 27 H 1.09000 * 109.46721 * 119.99798 * 2 1 3 28 28 H 1.09004 * 109.47775 * 59.99582 * 3 2 1 29 29 H 1.09000 * 109.47365 * 299.99404 * 3 2 1 30 30 H 1.08993 * 109.47366 * 299.99675 * 4 3 2 31 31 H 1.08998 * 109.46871 * 60.00046 * 4 3 2 32 32 H 0.96998 * 119.99927 * 179.97438 * 9 8 6 33 33 H 1.08001 * 119.39299 * 180.25346 * 16 15 14 34 34 H 1.08000 * 120.82732 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1946 3.5020 1.1811 7 1 3.7710 4.4896 1.2888 8 6 4.8776 2.9202 2.2409 9 7 5.3322 1.6905 2.1345 10 14 5.1508 3.8839 3.8176 11 1 4.0149 3.6486 4.7447 12 1 6.4136 3.4368 4.4584 13 1 5.2411 5.3323 3.5030 14 6 4.3814 3.4426 -1.1940 15 7 4.1339 2.8294 -2.3417 16 6 4.4213 3.3848 -3.5019 17 6 5.0086 4.6376 -3.5723 18 17 5.3823 5.3432 -5.1138 19 6 5.2949 5.3228 -2.4036 20 6 4.9760 4.7170 -1.1826 21 6 5.2514 5.3820 0.0553 22 7 5.4706 5.9090 1.0384 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9290 0.8908 31 1 3.9337 0.9286 -0.8891 32 1 5.8096 1.2842 2.8747 33 1 4.1990 2.8516 -4.4144 34 1 5.7522 6.3008 -2.4332 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132557.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 58.686014 kcal Electronic energy + Delta-G solvation = -19346.391284 eV Core-core repulsion = 16305.342007 eV Total energy + Delta-G solvation = -3041.049277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70848 -36.92531 -35.81675 -35.47725 -34.09906 -32.29328 -31.70716 -29.60265 -28.04400 -25.31358 -23.65195 -23.18334 -21.14592 -20.37798 -18.37653 -17.85329 -16.50694 -15.75697 -15.22906 -14.80463 -14.47081 -14.14598 -13.63158 -13.38702 -13.12247 -12.50414 -12.39563 -12.34454 -12.24900 -12.04783 -11.75346 -11.70474 -11.47127 -11.26545 -10.92671 -10.71166 -10.63066 -10.53899 -10.35903 -10.17115 -9.84875 -9.27959 -9.08756 -8.80211 -8.75477 -6.95036 -6.51092 -4.45174 1.52325 1.98524 2.71902 3.04048 3.13690 3.31928 3.88786 3.93753 3.97967 4.41270 4.61026 4.85352 4.94682 5.28859 5.35850 5.41528 5.46175 5.58258 5.85117 5.99031 6.06715 6.17827 6.26783 6.30052 6.42618 6.47504 6.56987 6.59026 6.72138 6.88066 7.04808 7.10654 7.35359 7.87459 8.18512 8.54780 8.77667 8.84968 9.35400 10.29078 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.007342 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.801343 B = 3812.595530 C = 5588.045349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.124 4.124 4 C 0.105 3.895 5 N -0.386 5.386 6 C -0.334 4.334 7 H 0.099 0.901 8 C 0.063 3.937 9 N -0.849 5.849 10 Si 0.906 3.094 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.235 1.235 14 C 0.402 3.598 15 N -0.542 5.542 16 C 0.200 3.800 17 C -0.209 4.209 18 Cl -0.093 7.093 19 C 0.027 3.973 20 C -0.158 4.158 21 C 0.300 3.700 22 N -0.467 5.467 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.277 0.723 33 H 0.152 0.848 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 -0.635 -7.565 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.163 4.163 4 C -0.018 4.018 5 N -0.069 5.069 6 C -0.462 4.462 7 H 0.116 0.884 8 C -0.147 4.147 9 N -0.481 5.481 10 Si 0.730 3.270 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.157 1.157 14 C 0.158 3.842 15 N -0.260 5.260 16 C 0.031 3.969 17 C -0.243 4.243 18 Cl -0.065 7.065 19 C -0.001 4.001 20 C -0.172 4.172 21 C -0.011 4.011 22 N -0.146 5.146 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.595 -0.930 -5.611 6.729 hybrid contribution 0.463 0.907 0.176 1.034 sum -3.132 -0.023 -5.435 6.273 Atomic orbital electron populations 1.21755 0.96602 1.00728 1.01487 1.21410 0.95006 0.97521 1.01671 1.21869 0.97303 0.95686 1.01432 1.21910 0.91787 0.83609 1.04488 1.42506 1.51400 1.11629 1.01350 1.19658 1.35221 1.02975 0.88395 0.88369 1.25619 0.93297 0.95603 1.00176 1.69711 1.32992 1.12363 1.33052 0.86149 0.78002 0.82838 0.80013 1.20123 1.20549 1.15749 1.18898 0.89523 0.88520 0.87246 1.67425 1.26299 1.35589 0.96685 1.22318 0.89717 0.89585 0.95317 1.20960 1.18520 0.98958 0.85895 1.98283 1.94172 1.84414 1.29669 1.20959 0.92163 0.97810 0.89174 1.15896 1.16207 0.97347 0.87758 1.24541 0.92942 0.91888 0.91754 1.81109 1.10628 1.13840 1.08993 0.93063 0.93385 0.93082 0.92287 0.92222 0.92302 0.92882 0.86603 0.91846 0.91275 0.83068 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.12 -2.29 5.52 -26.73 -0.15 -2.43 16 4 C 0.10 2.23 5.08 -4.04 -0.02 2.21 16 5 N -0.39 -8.93 2.58 -114.78 -0.30 -9.23 16 6 C -0.33 -8.23 6.24 -15.07 -0.09 -8.33 16 7 H 0.10 2.51 5.79 -52.49 -0.30 2.21 16 8 C 0.06 1.57 5.39 -17.45 -0.09 1.47 16 9 N -0.85 -21.39 11.01 55.49 0.61 -20.78 16 10 Si 0.91 20.29 28.70 -169.99 -4.88 15.42 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.23 -5.44 6.39 56.52 0.36 -5.08 16 14 C 0.40 8.70 7.35 -155.07 -1.14 7.56 16 15 N -0.54 -10.53 9.07 -12.12 -0.11 -10.64 16 16 C 0.20 3.25 10.96 -17.45 -0.19 3.06 16 17 C -0.21 -3.32 6.34 -39.38 -0.25 -3.57 16 18 Cl -0.09 -1.27 28.98 -51.86 -1.50 -2.77 16 19 C 0.03 0.46 9.70 -38.84 -0.38 0.09 16 20 C -0.16 -3.25 5.77 -106.42 -0.61 -3.86 16 21 C 0.30 6.69 11.46 -22.45 -0.26 6.44 16 22 N -0.47 -10.98 15.80 41.87 0.66 -10.32 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.12 2.71 5.48 -51.93 -0.28 2.42 16 31 H 0.06 1.33 7.31 -51.93 -0.38 0.95 16 32 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -25.55 306.40 -7.82 -33.37 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.95 Total: 1.22 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.97 Total: -0.88 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.87 Total: -50.97 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.88 Total: 15.42 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.55 -7.82 -33.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132557.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.059 kcal (2) G-P(sol) polarization free energy of solvation -25.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds