Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 C 1.50703 * 109.47094 * 240.00260 * 2 1 3 5 5 H 1.07991 * 119.99809 * 239.99632 * 4 2 1 6 6 C 1.37882 * 119.99875 * 59.99994 * 4 2 1 7 7 N 1.31512 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99666 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47551 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47131 * 120.00331 * 8 6 4 11 11 H 1.48499 * 109.47221 * 239.99821 * 8 6 4 12 12 C 1.52997 * 109.46983 * 120.00281 * 2 1 3 13 13 N 1.46502 * 109.47123 * 299.99721 * 12 2 1 14 14 C 1.39028 * 119.99961 * 179.97438 * 13 12 2 15 15 C 1.38997 * 119.62995 * 0.02562 * 14 13 12 16 16 C 1.39646 * 118.94825 * 180.29879 * 15 14 13 17 17 C 1.43200 * 120.87771 * 179.72264 * 16 15 14 18 18 N 7.44866 * 113.27768 * 127.79574 * 2 1 3 19 19 C 1.40074 * 118.24086 * 359.47750 * 16 15 14 20 20 C 1.38050 * 119.14793 * 0.50164 * 19 16 15 21 21 Cl 1.73595 * 119.51247 * 179.74164 * 20 19 16 22 22 N 1.32045 * 120.97451 * 359.76414 * 20 19 16 23 23 H 1.08996 * 109.46857 * 300.00009 * 1 2 3 24 24 H 1.09004 * 109.46630 * 59.99913 * 1 2 3 25 25 H 1.09005 * 109.46653 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46813 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47338 * 300.00262 * 3 2 1 28 28 H 1.09006 * 109.46919 * 60.00013 * 3 2 1 29 29 H 0.97006 * 119.99379 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46576 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.47060 * 60.00277 * 12 2 1 32 32 H 0.96998 * 119.99928 * 0.02562 * 13 12 2 33 33 H 1.08002 * 120.52161 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.42628 * 180.21908 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.1475 -2.2861 -3.6040 10 1 1.1679 -1.5864 -4.8166 11 1 3.1473 -0.1855 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8872 -0.5061 3.7081 15 6 2.6867 -1.6369 3.8266 16 6 3.0097 -2.1057 5.1018 17 6 3.8254 -3.2703 5.2719 18 7 4.4737 -4.1933 5.4068 19 6 2.5189 -1.4036 6.2101 20 6 1.7312 -0.2886 6.0048 21 17 1.1123 0.5847 7.3715 22 7 1.4412 0.1232 4.7841 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.7088 1.1614 -3.4844 30 1 3.1301 -0.7209 1.2494 31 1 1.6768 -1.7490 1.2491 32 1 0.9938 0.7578 2.3564 33 1 3.0487 -2.1474 2.9464 34 1 2.7499 -1.7330 7.2123 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348206952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = 56.848169 kcal Electronic energy + Delta-G solvation = -18639.456619 eV Core-core repulsion = 15598.327647 eV Total energy + Delta-G solvation = -3041.128972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48895 -37.44218 -36.99948 -36.47566 -34.20954 -32.80043 -31.36901 -29.21176 -25.93582 -25.81684 -25.05110 -24.84457 -22.59373 -19.48634 -18.93061 -17.36211 -16.24763 -15.95907 -15.64177 -15.18305 -15.09638 -14.66597 -14.09299 -13.88766 -13.46783 -13.25198 -13.17261 -12.94287 -12.41485 -12.08095 -12.00011 -11.46517 -11.41134 -11.30138 -11.00443 -10.74662 -10.55530 -10.28189 -10.19198 -9.83807 -9.78103 -9.49149 -9.48796 -8.90711 -8.49017 -7.63208 -6.12162 -4.23702 0.49580 1.04652 1.60693 2.40488 2.85707 3.20473 3.29708 3.31367 3.41714 3.53155 3.72956 4.31045 4.78484 4.79903 4.94402 5.15079 5.16809 5.39469 5.84144 5.87079 6.00945 6.13304 6.29772 6.58544 6.75232 6.82759 6.89523 6.99420 7.18768 7.24502 7.44891 7.58351 7.69538 7.90322 7.96771 8.09930 8.27053 8.76551 9.43161 10.89121 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.004088 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.267449 B = 6847.825360 C = 7925.018785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 C -0.132 4.132 4 C -0.510 4.510 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.129 3.871 13 N -0.695 5.695 14 C 0.436 3.564 15 C -0.191 4.191 16 C 0.074 3.926 17 C 0.261 3.739 18 N -0.401 5.401 19 C -0.195 4.195 20 C 0.237 3.763 21 Cl -0.031 7.031 22 N -0.534 5.534 23 H 0.009 0.991 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.411 0.589 33 H 0.151 0.849 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -1.045 14.254 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 C -0.190 4.190 4 C -0.549 4.549 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.006 3.994 13 N -0.323 5.323 14 C 0.196 3.804 15 C -0.220 4.220 16 C 0.063 3.937 17 C -0.055 4.055 18 N -0.076 5.076 19 C -0.222 4.222 20 C 0.070 3.930 21 Cl -0.002 7.002 22 N -0.255 5.255 23 H 0.028 0.972 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.249 0.751 33 H 0.169 0.831 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.159 -1.643 14.072 14.215 hybrid contribution 0.239 -0.336 -0.747 0.854 sum 1.398 -1.979 13.325 13.543 Atomic orbital electron populations 1.21844 0.97491 0.99285 1.00403 1.18342 0.93026 0.92878 0.89963 1.21842 0.98577 0.98193 1.00399 1.20955 1.31900 1.12260 0.89772 0.92348 1.24875 0.94733 0.94862 0.98920 1.69812 1.36294 1.22600 1.23315 0.86517 0.78675 0.79705 0.82983 1.19773 1.21009 1.21004 1.22018 0.98057 0.95977 0.83338 1.45326 1.53634 1.32193 1.01129 1.18003 0.88501 0.88035 0.85869 1.21565 1.03906 0.99180 0.97312 1.15659 0.94855 0.89637 0.93562 1.25331 0.93545 0.92891 0.93771 1.81263 1.08783 1.10253 1.07277 1.21249 1.04046 0.97514 0.99434 1.20850 0.93547 0.90635 0.87925 1.98408 1.86390 1.76553 1.38882 1.66294 1.27789 1.34211 0.97220 0.97223 0.89512 0.95368 0.95370 0.89514 0.97230 0.92909 0.92368 0.92365 0.75116 0.83109 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.06 1.23 0.50 -155.65 -0.08 1.16 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.28 8.01 -34.44 -0.28 -12.55 16 5 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -22.50 9.35 55.43 0.52 -21.99 16 8 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.13 2.23 3.72 -4.04 -0.02 2.22 16 13 N -0.69 -10.85 5.13 -60.45 -0.31 -11.16 16 14 C 0.44 6.25 7.65 -155.06 -1.19 5.07 16 15 C -0.19 -2.41 9.07 -38.77 -0.35 -2.76 16 16 C 0.07 0.84 5.75 -106.76 -0.61 0.23 16 17 C 0.26 3.13 15.40 -22.47 -0.35 2.78 16 18 N -0.40 -5.51 18.54 41.84 0.78 -4.74 16 19 C -0.20 -2.06 9.61 -38.96 -0.37 -2.44 16 20 C 0.24 2.89 7.26 -17.53 -0.13 2.77 16 21 Cl -0.03 -0.33 29.10 -51.86 -1.51 -1.84 16 22 N -0.53 -7.65 10.35 -9.62 -0.10 -7.75 16 23 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 24 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 29 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 30 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 31 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 32 H 0.41 6.61 6.29 -40.82 -0.26 6.36 16 33 H 0.15 1.82 6.70 -52.49 -0.35 1.47 16 34 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -24.76 306.70 -7.47 -32.23 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.58 Total: 2.90 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.86 Total: -6.94 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.88 Total: -45.64 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -24.76 -7.47 -32.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348206952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.076 kcal (2) G-P(sol) polarization free energy of solvation -24.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds