Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 C 1.50703 * 109.47094 * 240.00260 * 2 1 3 5 5 H 1.07991 * 119.99809 * 239.99632 * 4 2 1 6 6 C 1.37882 * 119.99875 * 59.99994 * 4 2 1 7 7 N 1.31512 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99666 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47551 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47131 * 120.00331 * 8 6 4 11 11 H 1.48499 * 109.47221 * 239.99821 * 8 6 4 12 12 C 1.52997 * 109.46983 * 120.00281 * 2 1 3 13 13 N 1.46502 * 109.47123 * 299.99721 * 12 2 1 14 14 C 1.39028 * 119.99961 * 179.97438 * 13 12 2 15 15 C 1.38997 * 119.62995 * 0.02562 * 14 13 12 16 16 C 1.39646 * 118.94825 * 180.29879 * 15 14 13 17 17 C 1.43200 * 120.87771 * 179.72264 * 16 15 14 18 18 N 7.44866 * 113.27768 * 127.79574 * 2 1 3 19 19 C 1.40074 * 118.24086 * 359.47750 * 16 15 14 20 20 C 1.38050 * 119.14793 * 0.50164 * 19 16 15 21 21 Cl 1.73595 * 119.51247 * 179.74164 * 20 19 16 22 22 N 1.32045 * 120.97451 * 359.76414 * 20 19 16 23 23 H 1.08996 * 109.46857 * 300.00009 * 1 2 3 24 24 H 1.09004 * 109.46630 * 59.99913 * 1 2 3 25 25 H 1.09005 * 109.46653 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46813 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47338 * 300.00262 * 3 2 1 28 28 H 1.09006 * 109.46919 * 60.00013 * 3 2 1 29 29 H 0.97006 * 119.99379 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46576 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.47060 * 60.00277 * 12 2 1 32 32 H 0.96998 * 119.99928 * 0.02562 * 13 12 2 33 33 H 1.08002 * 120.52161 * 0.02562 * 15 14 13 34 34 H 1.07998 * 120.42628 * 180.21908 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.1475 -2.2861 -3.6040 10 1 1.1679 -1.5864 -4.8166 11 1 3.1473 -0.1855 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8872 -0.5061 3.7081 15 6 2.6867 -1.6369 3.8266 16 6 3.0097 -2.1057 5.1018 17 6 3.8254 -3.2703 5.2719 18 7 4.4737 -4.1933 5.4068 19 6 2.5189 -1.4036 6.2101 20 6 1.7312 -0.2886 6.0048 21 17 1.1123 0.5847 7.3715 22 7 1.4412 0.1232 4.7841 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.7088 1.1614 -3.4844 30 1 3.1301 -0.7209 1.2494 31 1 1.6768 -1.7490 1.2491 32 1 0.9938 0.7578 2.3564 33 1 3.0487 -2.1474 2.9464 34 1 2.7499 -1.7330 7.2123 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348206952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 45.331320 kcal Electronic energy + Delta-G solvation = -18639.956027 eV Core-core repulsion = 15598.327647 eV Total energy + Delta-G solvation = -3041.628380 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51381 -38.80326 -37.97137 -37.53670 -35.59454 -33.86384 -32.99254 -30.35624 -27.53174 -27.49285 -26.63793 -25.87742 -23.71361 -20.59999 -20.47884 -18.50461 -17.81291 -16.99595 -16.81480 -16.63294 -16.16065 -15.96996 -15.42455 -15.10333 -14.70071 -14.58603 -14.29091 -14.17419 -13.91886 -13.40227 -13.06505 -13.01816 -12.95528 -12.57551 -12.52193 -12.27493 -12.22680 -12.08793 -11.50406 -11.18974 -11.16573 -10.82024 -10.64520 -10.59035 -10.34946 -8.73134 -7.98977 -6.14789 -0.48032 0.08225 0.68579 1.42844 1.44187 1.49803 1.57017 1.87215 2.25189 2.50129 2.54572 2.74390 3.26043 3.80471 3.84423 3.94609 4.22848 4.38493 4.44744 4.56651 4.74919 4.94479 4.96958 5.10449 5.12158 5.20550 5.23914 5.48386 5.69837 5.71548 5.87466 6.16466 6.23013 6.24958 6.44981 6.55521 6.89889 6.97255 7.53825 9.00040 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.004088 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.267449 B = 6847.825360 C = 7925.018785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.520 4.520 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.943 3.057 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.287 1.287 12 C 0.147 3.853 13 N -0.703 5.703 14 C 0.424 3.576 15 C -0.190 4.190 16 C 0.080 3.920 17 C 0.283 3.717 18 N -0.428 5.428 19 C -0.171 4.171 20 C 0.224 3.776 21 Cl -0.017 7.017 22 N -0.550 5.550 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.257 0.743 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.407 0.593 33 H 0.156 0.844 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -1.729 16.018 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.559 4.559 5 H 0.075 0.925 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.770 3.230 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.213 1.213 12 C 0.023 3.977 13 N -0.332 5.332 14 C 0.186 3.814 15 C -0.218 4.218 16 C 0.069 3.931 17 C -0.033 4.033 18 N -0.104 5.104 19 C -0.198 4.198 20 C 0.059 3.941 21 Cl 0.011 6.989 22 N -0.271 5.271 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.173 0.827 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.653 -2.340 15.876 16.133 hybrid contribution 0.078 -0.108 -1.156 1.164 sum 1.730 -2.448 14.720 15.022 Atomic orbital electron populations 1.21678 0.97669 0.98767 0.99851 1.18342 0.92877 0.92886 0.90886 1.21675 0.98140 0.98293 0.99848 1.21319 1.31360 1.12172 0.91029 0.92512 1.25472 0.95247 0.95537 1.01144 1.69948 1.37260 1.23565 1.23337 0.85742 0.77958 0.78823 0.80457 1.19308 1.21338 1.21325 1.21602 0.97996 0.95545 0.82542 1.45031 1.54605 1.32380 1.01201 1.17979 0.89356 0.88693 0.85387 1.21603 1.03470 0.98678 0.98083 1.15582 0.94740 0.89418 0.93408 1.25205 0.92832 0.92400 0.92881 1.81301 1.09735 1.11126 1.08222 1.21547 1.01727 0.95956 1.00545 1.21086 0.94048 0.91338 0.87670 1.98416 1.86254 1.76361 1.37856 1.66230 1.28141 1.34794 0.97934 0.95241 0.92484 0.95764 0.95761 0.92486 0.95249 0.93316 0.92092 0.92091 0.75580 0.82674 0.80592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.08 71.99 0.58 -4.56 16 2 C 0.05 2.12 0.50 -52.92 -0.03 2.09 16 3 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.52 -24.96 8.01 25.60 0.21 -24.75 16 5 H 0.06 2.68 7.74 -2.92 -0.02 2.66 16 6 C 0.03 1.28 5.15 84.66 0.44 1.71 16 7 N -0.90 -46.84 9.35 21.45 0.20 -46.64 16 8 Si 0.94 40.55 29.54 68.60 2.03 42.57 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.15 4.92 3.72 86.38 0.32 5.24 16 13 N -0.70 -21.02 5.13 -345.17 -1.77 -22.80 16 14 C 0.42 11.42 7.65 133.02 1.02 12.44 16 15 C -0.19 -4.40 9.07 22.79 0.21 -4.19 16 16 C 0.08 1.59 5.75 -21.25 -0.12 1.47 16 17 C 0.28 6.07 15.40 88.33 1.36 7.43 16 18 N -0.43 -10.93 18.54 19.00 0.35 -10.58 16 19 C -0.17 -3.05 9.61 22.67 0.22 -2.83 16 20 C 0.22 4.90 7.26 84.62 0.61 5.51 16 21 Cl -0.02 -0.33 29.10 -2.72 -0.08 -0.41 16 22 N -0.55 -14.69 10.35 -184.34 -1.91 -16.60 16 23 H 0.03 1.08 6.86 -2.39 -0.02 1.07 16 24 H 0.06 2.76 6.07 -2.38 -0.01 2.75 16 25 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 2.76 6.07 -2.39 -0.01 2.74 16 28 H 0.03 1.08 6.86 -2.38 -0.02 1.06 16 29 H 0.26 13.00 8.31 -92.70 -0.77 12.23 16 30 H 0.06 1.99 7.92 -2.39 -0.02 1.97 16 31 H 0.06 1.99 7.92 -2.39 -0.02 1.97 16 32 H 0.41 12.62 6.29 -92.71 -0.58 12.04 16 33 H 0.16 3.44 6.70 -2.91 -0.02 3.42 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -52.20 306.70 4.78 -47.43 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.56 Total: 12.02 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.39 Total: -4.99 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -3.13 Total: -96.61 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -52.20 4.78 -47.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348206952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.756 kcal (2) G-P(sol) polarization free energy of solvation -52.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds