Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47212 * 89.99990 * 8 6 4 10 10 H 1.48498 * 109.47421 * 210.00302 * 8 6 4 11 11 H 1.48504 * 109.47342 * 330.00327 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.38739 * 119.99868 * 275.27579 * 12 2 1 14 14 C 1.40568 * 119.74890 * 359.72319 * 13 12 2 15 15 N 1.31127 * 120.61161 * 179.97438 * 14 13 12 16 16 C 1.33901 * 119.87087 * 0.02616 * 15 14 13 17 17 C 1.40526 * 120.92634 * 180.02562 * 16 15 14 18 18 C 1.36243 * 119.76434 * 179.97438 * 17 16 15 19 19 F 1.35099 * 119.56850 * 180.02562 * 18 17 16 20 20 C 1.39814 * 120.86122 * 0.02562 * 18 17 16 21 21 F 1.35102 * 119.57147 * 179.97438 * 20 18 17 22 22 C 1.36278 * 120.85254 * 359.97059 * 20 18 17 23 23 C 1.40493 * 119.75392 * 0.05052 * 22 20 18 24 24 N 1.31948 * 119.74960 * 179.44589 * 13 12 2 25 25 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 26 26 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.07998 * 119.69461 * 359.97438 * 14 13 12 31 31 H 1.08001 * 120.11776 * 0.02562 * 17 16 15 32 32 H 1.08004 * 120.12635 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 2.1454 0.0000 2.3927 14 6 1.8097 1.3638 2.4499 15 7 1.9228 2.0328 3.5719 16 6 2.3623 1.4148 4.6754 17 6 2.4916 2.1101 5.8897 18 6 2.9407 1.4577 6.9983 19 9 3.0629 2.1299 8.1638 20 6 3.2768 0.1016 6.9454 21 9 3.7200 -0.5194 8.0604 22 6 3.1629 -0.6019 5.7838 23 6 2.7034 0.0404 4.6219 24 7 2.5753 -0.6296 3.4696 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 1.4552 1.8652 1.5614 31 1 2.2350 3.1578 5.9443 32 1 3.4254 -1.6492 5.7564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172409678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = -33.953474 kcal Electronic energy + Delta-G solvation = -20496.874303 eV Core-core repulsion = 16900.011197 eV Total energy + Delta-G solvation = -3596.863107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.61307 -49.67763 -42.40149 -38.99394 -37.12959 -35.86151 -34.42127 -31.74424 -31.29545 -29.50954 -27.36706 -26.09486 -24.85328 -23.92740 -22.60315 -20.30481 -19.89310 -19.08906 -18.37133 -17.70878 -17.50012 -17.31894 -16.80026 -16.62447 -16.12809 -16.09473 -15.63471 -15.34167 -15.19740 -14.79514 -14.38843 -14.13985 -13.90127 -13.30772 -12.95552 -12.87452 -12.78784 -12.70209 -12.64812 -12.43493 -12.24026 -12.10632 -11.14307 -10.73954 -10.47018 -10.24173 -9.83328 -8.65925 -8.20237 -6.34566 -0.99979 -0.54387 0.74861 1.42477 1.45724 1.48806 1.56486 2.04739 2.43335 2.59022 2.84222 2.84906 3.10928 3.12464 3.16408 3.48077 3.69777 3.96253 4.12323 4.24169 4.52630 4.64334 4.66330 4.73242 4.92233 4.96581 5.06622 5.34190 5.48375 5.60552 5.76105 5.89438 6.06887 6.35100 6.62988 6.67747 6.98497 7.36949 8.84890 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.043024 B = 0.003532 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.646353 B = 7926.237239 C = 8321.667900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.270 3.730 3 H 0.035 0.965 4 C -0.550 4.550 5 H 0.064 0.936 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.670 5.670 13 C 0.385 3.615 14 C 0.055 3.945 15 N -0.398 5.398 16 C 0.001 3.999 17 C -0.051 4.051 18 C 0.052 3.948 19 F -0.127 7.127 20 C 0.113 3.887 21 F -0.123 7.123 22 C -0.117 4.117 23 C 0.151 3.849 24 N -0.540 5.540 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.268 0.732 29 H 0.405 0.595 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 0.423 13.735 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.167 3.833 3 H 0.053 0.947 4 C -0.588 4.588 5 H 0.082 0.918 6 C -0.173 4.173 7 N -0.544 5.544 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.297 5.297 13 C 0.131 3.869 14 C -0.130 4.130 15 N -0.110 5.110 16 C -0.124 4.124 17 C -0.071 4.071 18 C 0.029 3.971 19 F -0.106 7.106 20 C 0.091 3.909 21 F -0.101 7.101 22 C -0.138 4.138 23 C 0.023 3.977 24 N -0.268 5.268 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.241 0.759 30 H 0.199 0.801 31 H 0.194 0.806 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.146 0.680 13.656 13.840 hybrid contribution 0.351 -0.783 -0.731 1.127 sum 2.497 -0.102 12.925 13.165 Atomic orbital electron populations 1.22083 0.97447 0.99995 1.00840 1.18792 0.91472 0.92855 0.80173 0.94721 1.21411 1.32843 1.13766 0.90823 0.91774 1.25512 0.94788 0.95506 1.01500 1.69938 1.36342 1.23250 1.24848 0.85507 0.78751 0.78242 0.78834 1.20153 1.20975 1.19579 1.45440 1.65216 1.13304 1.05739 1.19868 0.89030 0.90365 0.87606 1.23874 1.00286 0.91232 0.97597 1.68516 1.08110 1.36360 0.98002 1.19186 1.06458 0.92415 0.94321 1.20578 0.96625 1.01941 0.87951 1.17008 1.07692 0.89049 0.83324 1.91540 1.94145 1.79618 1.45267 1.17198 1.00484 0.89472 0.83732 1.91555 1.86575 1.82246 1.49752 1.20486 1.02561 1.02317 0.88424 1.19097 0.95509 0.90768 0.92315 1.68285 1.23548 1.36830 0.98105 0.90524 0.94818 0.95017 0.92277 0.75892 0.80081 0.80631 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 9.17 71.98 0.66 -5.35 16 2 C 0.27 11.51 2.24 44.25 0.10 11.61 16 3 H 0.04 1.58 6.44 -2.39 -0.02 1.57 16 4 C -0.55 -26.16 8.73 25.60 0.22 -25.93 16 5 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 6 C 0.03 1.38 5.30 84.66 0.45 1.83 16 7 N -0.91 -45.66 11.32 21.45 0.24 -45.41 16 8 Si 0.96 39.15 29.54 68.60 2.03 41.17 16 9 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 N -0.67 -25.02 5.23 -327.41 -1.71 -26.73 16 13 C 0.39 13.70 7.63 133.64 1.02 14.72 16 14 C 0.05 1.86 9.96 85.37 0.85 2.71 16 15 N -0.40 -12.87 10.45 -187.50 -1.96 -14.83 16 16 C 0.00 0.02 6.59 40.24 0.27 0.28 16 17 C -0.05 -1.22 9.93 22.36 0.22 -1.00 16 18 C 0.05 1.21 7.24 22.19 0.16 1.37 16 19 F -0.13 -2.92 17.14 44.97 0.77 -2.15 16 20 C 0.11 2.66 7.24 22.19 0.16 2.82 16 21 F -0.12 -2.84 17.15 44.97 0.77 -2.07 16 22 C -0.12 -2.91 9.94 22.36 0.22 -2.69 16 23 C 0.15 4.61 6.59 40.23 0.27 4.87 16 24 N -0.54 -18.45 10.49 -185.65 -1.95 -20.40 16 25 H 0.08 3.54 6.07 -2.38 -0.01 3.53 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.17 7.64 -2.39 -0.02 1.15 16 28 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 29 H 0.41 14.57 8.66 -92.71 -0.80 13.77 16 30 H 0.18 6.10 6.03 -2.91 -0.02 6.08 16 31 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.17 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -50.07 288.35 3.18 -46.88 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.39 Total: 18.29 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.60 Total: 5.25 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -5.38 Total: -107.37 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 1.54 Total: -4.22 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.17 kcal Total: -50.07 3.18 -46.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172409678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.931 kcal (2) G-P(sol) polarization free energy of solvation -50.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds