Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47161 * 2 1 4 4 C 1.50695 * 109.47116 * 120.00524 * 2 1 3 5 5 H 1.08005 * 120.00161 * 119.99603 * 4 2 1 6 6 C 1.37875 * 120.00140 * 299.99865 * 4 2 1 7 7 N 1.31521 * 119.99653 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00277 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47035 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46934 * 119.99906 * 8 6 4 11 11 H 1.48497 * 109.47165 * 239.99897 * 8 6 4 12 12 N 1.46501 * 109.46693 * 240.00261 * 2 1 3 13 13 C 1.37900 * 120.00062 * 85.00483 * 12 2 1 14 14 N 1.32658 * 120.90077 * 359.97316 * 13 12 2 15 15 C 1.32340 * 121.49554 * 180.02562 * 14 13 12 16 16 N 1.31192 * 122.96120 * 0.02562 * 15 14 13 17 17 C 1.34163 * 120.46061 * 359.97438 * 16 15 14 18 18 C 1.40081 * 121.94346 * 179.97438 * 17 16 15 19 19 C 1.36511 * 119.60864 * 180.02562 * 18 17 16 20 20 F 1.35101 * 119.52127 * 180.02562 * 19 18 17 21 21 C 1.39662 * 120.95193 * 359.97438 * 19 18 17 22 22 F 1.35102 * 119.59442 * 180.02562 * 21 19 18 23 23 C 1.36481 * 120.82028 * 0.02562 * 21 19 18 24 24 C 1.39995 * 119.51571 * 0.02562 * 23 21 19 25 25 H 1.09003 * 109.47226 * 59.99532 * 1 2 3 26 26 H 1.08999 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47079 * 299.99866 * 1 2 3 28 28 H 0.96996 * 119.99787 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99893 * 264.99971 * 12 2 1 30 30 H 1.07998 * 118.51891 * 180.02562 * 15 14 13 31 31 H 1.08005 * 120.19307 * 0.04184 * 18 17 16 32 32 H 1.08000 * 120.24164 * 180.27219 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 3.1454 -2.2880 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1660 -1.5870 4.8159 12 7 2.0182 -0.6906 -1.1962 13 6 2.1500 -0.0026 -2.3841 14 7 1.8393 1.2846 -2.4639 15 6 1.9608 1.9562 -3.5978 16 7 2.3900 1.4078 -4.7096 17 6 2.7319 0.1109 -4.7405 18 6 3.1932 -0.5063 -5.9104 19 6 3.5276 -1.8296 -5.8880 20 9 3.9729 -2.4230 -7.0171 21 6 3.4169 -2.5787 -4.7144 22 9 3.7559 -3.8865 -4.7232 23 6 2.9707 -2.0060 -3.5588 24 6 2.6193 -0.6509 -3.5515 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1612 3.4844 29 1 2.2489 -1.6317 -1.1527 30 1 1.6945 3.0028 -3.6083 31 1 3.2842 0.0616 -6.8245 32 1 2.8929 -2.5930 -2.6555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174715735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = -23.948015 kcal Electronic energy + Delta-G solvation = -20861.320487 eV Core-core repulsion = 17264.891249 eV Total energy + Delta-G solvation = -3596.429238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.55840 -48.60969 -41.06625 -37.29852 -36.58223 -33.76533 -31.97868 -31.04974 -29.95581 -28.36104 -25.46263 -24.54405 -24.03413 -22.33339 -20.81639 -19.32233 -18.46817 -17.69020 -17.22402 -16.42317 -16.12338 -16.08219 -15.21205 -15.04367 -14.99748 -14.70681 -14.38900 -14.13402 -13.83026 -13.61825 -13.09718 -12.67592 -12.49701 -11.81296 -11.68427 -11.45210 -11.20127 -10.97921 -10.76744 -10.57361 -10.39852 -10.34944 -9.27439 -9.06564 -9.01233 -8.82623 -8.60028 -7.41274 -6.29318 -4.39941 0.32829 0.62672 2.01766 2.75043 3.14255 3.22683 3.24596 3.51506 3.62308 4.05282 4.20434 4.25414 4.26991 4.47351 4.56203 4.82327 5.04158 5.18917 5.30417 5.51172 5.58381 5.68527 5.80483 6.36946 6.51738 6.66902 6.81471 6.90430 7.08115 7.23006 7.46288 7.62375 7.76439 7.96368 8.17952 8.57212 8.73529 9.27722 10.76384 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.004682 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.056183 B = 5978.520807 C = 6945.143694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.063 0.937 4 C -0.543 4.543 5 H 0.062 0.938 6 C 0.071 3.929 7 N -0.879 5.879 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.654 5.654 13 C 0.483 3.517 14 N -0.589 5.589 15 C 0.367 3.633 16 N -0.581 5.581 17 C 0.215 3.785 18 C -0.131 4.131 19 C 0.116 3.884 20 F -0.127 7.127 21 C 0.031 3.969 22 F -0.132 7.132 23 C -0.059 4.059 24 C -0.204 4.204 25 H 0.019 0.981 26 H 0.026 0.974 27 H 0.094 0.906 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.193 0.807 31 H 0.157 0.843 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -3.020 -12.169 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.581 4.581 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.516 5.516 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.276 5.276 13 C 0.225 3.775 14 N -0.318 5.318 15 C 0.076 3.924 16 N -0.304 5.304 17 C 0.087 3.913 18 C -0.152 4.152 19 C 0.093 3.907 20 F -0.105 7.105 21 C 0.009 3.991 22 F -0.110 7.110 23 C -0.080 4.080 24 C -0.214 4.214 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.239 0.761 30 H 0.209 0.791 31 H 0.175 0.825 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.286 -1.941 -11.879 12.252 hybrid contribution 0.713 -2.019 0.745 2.267 sum 2.998 -3.960 -11.134 12.192 Atomic orbital electron populations 1.22091 0.97728 0.99318 1.01359 1.19079 0.91464 0.94401 0.78809 0.91945 1.21192 1.33125 1.13610 0.90175 0.91969 1.24846 0.94568 0.94876 0.99065 1.69892 1.35407 1.22185 1.24113 0.86361 0.78690 0.79549 0.82345 1.19709 1.20709 1.20729 1.45835 1.61723 1.12465 1.07596 1.18812 0.84434 0.88683 0.85569 1.68193 1.27797 1.06561 1.29243 1.24677 0.86029 0.99688 0.81957 1.68821 1.22116 1.09594 1.29837 1.18281 0.92150 0.90226 0.90624 1.20401 1.03202 0.92051 0.99527 1.17325 1.00181 0.91456 0.81729 1.91539 1.86593 1.83898 1.48483 1.17063 1.08448 0.79537 0.94014 1.91524 1.90528 1.31896 1.97078 1.20649 0.96025 0.94152 0.97204 1.18840 1.11074 0.95120 0.96345 0.96237 0.95486 0.88715 0.92385 0.76092 0.79051 0.82518 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.27 37.16 0.34 -2.94 16 2 C 0.26 5.99 2.59 -69.08 -0.18 5.81 16 3 H 0.06 1.61 7.57 -51.93 -0.39 1.21 16 4 C -0.54 -13.31 8.73 -34.44 -0.30 -13.61 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.09 11.32 55.43 0.63 -22.46 16 8 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 9 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.65 -12.24 5.13 -54.62 -0.28 -12.52 16 13 C 0.48 8.64 7.52 -154.94 -1.17 7.47 16 14 N -0.59 -10.84 9.33 -13.55 -0.13 -10.97 16 15 C 0.37 5.72 12.22 -92.20 -1.13 4.59 16 16 N -0.58 -9.10 10.45 -12.65 -0.13 -9.24 16 17 C 0.22 3.29 6.61 -84.85 -0.56 2.73 16 18 C -0.13 -1.71 9.96 -39.51 -0.39 -2.10 16 19 C 0.12 1.52 7.24 -39.67 -0.29 1.23 16 20 F -0.13 -1.64 17.14 2.25 0.04 -1.60 16 21 C 0.03 0.41 7.25 -39.68 -0.29 0.12 16 22 F -0.13 -1.81 17.14 2.25 0.04 -1.77 16 23 C -0.06 -0.80 9.49 -39.56 -0.38 -1.18 16 24 C -0.20 -3.19 5.76 -106.67 -0.61 -3.81 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.40 6.60 6.79 -40.82 -0.28 6.33 16 30 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.15 1.75 6.58 -52.49 -0.35 1.40 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -26.71 288.78 -8.11 -34.82 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -2.56 Total: 4.80 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -5.04 Total: 0.01 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.09 Total: -55.19 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.71 -8.11 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174715735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.868 kcal (2) G-P(sol) polarization free energy of solvation -26.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds