Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47161 * 2 1 4 4 C 1.50695 * 109.47116 * 120.00524 * 2 1 3 5 5 H 1.08005 * 120.00161 * 119.99603 * 4 2 1 6 6 C 1.37875 * 120.00140 * 299.99865 * 4 2 1 7 7 N 1.31521 * 119.99653 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00277 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47035 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46934 * 119.99906 * 8 6 4 11 11 H 1.48497 * 109.47165 * 239.99897 * 8 6 4 12 12 N 1.46501 * 109.46693 * 240.00261 * 2 1 3 13 13 C 1.37900 * 120.00062 * 85.00483 * 12 2 1 14 14 N 1.32658 * 120.90077 * 359.97316 * 13 12 2 15 15 C 1.32340 * 121.49554 * 180.02562 * 14 13 12 16 16 N 1.31192 * 122.96120 * 0.02562 * 15 14 13 17 17 C 1.34163 * 120.46061 * 359.97438 * 16 15 14 18 18 C 1.40081 * 121.94346 * 179.97438 * 17 16 15 19 19 C 1.36511 * 119.60864 * 180.02562 * 18 17 16 20 20 F 1.35101 * 119.52127 * 180.02562 * 19 18 17 21 21 C 1.39662 * 120.95193 * 359.97438 * 19 18 17 22 22 F 1.35102 * 119.59442 * 180.02562 * 21 19 18 23 23 C 1.36481 * 120.82028 * 0.02562 * 21 19 18 24 24 C 1.39995 * 119.51571 * 0.02562 * 23 21 19 25 25 H 1.09003 * 109.47226 * 59.99532 * 1 2 3 26 26 H 1.08999 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47079 * 299.99866 * 1 2 3 28 28 H 0.96996 * 119.99787 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99893 * 264.99971 * 12 2 1 30 30 H 1.07998 * 118.51891 * 180.02562 * 15 14 13 31 31 H 1.08005 * 120.19307 * 0.04184 * 18 17 16 32 32 H 1.08000 * 120.24164 * 180.27219 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 3.1454 -2.2880 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1660 -1.5870 4.8159 12 7 2.0182 -0.6906 -1.1962 13 6 2.1500 -0.0026 -2.3841 14 7 1.8393 1.2846 -2.4639 15 6 1.9608 1.9562 -3.5978 16 7 2.3900 1.4078 -4.7096 17 6 2.7319 0.1109 -4.7405 18 6 3.1932 -0.5063 -5.9104 19 6 3.5276 -1.8296 -5.8880 20 9 3.9729 -2.4230 -7.0171 21 6 3.4169 -2.5787 -4.7144 22 9 3.7559 -3.8865 -4.7232 23 6 2.9707 -2.0060 -3.5588 24 6 2.6193 -0.6509 -3.5515 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1612 3.4844 29 1 2.2489 -1.6317 -1.1527 30 1 1.6945 3.0028 -3.6083 31 1 3.2842 0.0616 -6.8245 32 1 2.8929 -2.5930 -2.6555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174715735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = -37.077422 kcal Electronic energy + Delta-G solvation = -20861.889821 eV Core-core repulsion = 17264.891249 eV Total energy + Delta-G solvation = -3596.998571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.63229 -49.69083 -42.30130 -38.59159 -37.95606 -35.40182 -33.49616 -32.29438 -31.25924 -29.86937 -27.33851 -25.75073 -25.26277 -23.64637 -22.40850 -20.53255 -19.73793 -18.95793 -18.60488 -17.58896 -17.50532 -17.39615 -16.76366 -16.33234 -16.11528 -16.02149 -15.56908 -15.34227 -15.19123 -14.86505 -14.51222 -14.21262 -14.04511 -13.31846 -12.98058 -12.87061 -12.77239 -12.68511 -12.41124 -12.18675 -12.08643 -11.78034 -11.07366 -10.63054 -10.29004 -10.17044 -10.08450 -8.75790 -8.18980 -6.35421 -0.81703 -0.54179 0.78137 1.43600 1.46547 1.56209 1.60543 2.11149 2.43911 2.52965 2.93344 3.00950 3.12828 3.15231 3.26863 3.43370 3.65826 4.03002 4.13282 4.37402 4.49702 4.58291 4.73306 4.77678 4.98030 5.08511 5.22735 5.37942 5.52095 5.63264 5.74133 5.86855 6.07688 6.27011 6.61822 6.82107 7.33847 7.42350 8.86561 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.004682 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.056183 B = 5978.520807 C = 6945.143694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.027 0.973 4 C -0.552 4.552 5 H 0.069 0.931 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.660 5.660 13 C 0.473 3.527 14 N -0.619 5.619 15 C 0.360 3.640 16 N -0.578 5.578 17 C 0.199 3.801 18 C -0.120 4.120 19 C 0.122 3.878 20 F -0.123 7.123 21 C 0.037 3.963 22 F -0.131 7.131 23 C -0.058 4.058 24 C -0.207 4.207 25 H 0.022 0.978 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.266 0.734 29 H 0.413 0.587 30 H 0.222 0.778 31 H 0.179 0.821 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 -4.082 -13.286 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.174 3.826 3 H 0.044 0.956 4 C -0.591 4.591 5 H 0.087 0.913 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.286 5.286 13 C 0.216 3.784 14 N -0.349 5.349 15 C 0.070 3.930 16 N -0.299 5.299 17 C 0.071 3.929 18 C -0.140 4.140 19 C 0.099 3.901 20 F -0.101 7.101 21 C 0.016 3.984 22 F -0.110 7.110 23 C -0.079 4.079 24 C -0.216 4.216 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.251 0.749 30 H 0.238 0.762 31 H 0.197 0.803 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.045 -3.011 -13.060 13.744 hybrid contribution 0.524 -1.687 0.918 1.991 sum 3.569 -4.698 -12.142 13.499 Atomic orbital electron populations 1.21895 0.97853 0.99179 1.00200 1.18576 0.91248 0.92768 0.80041 0.95551 1.21538 1.32845 1.13705 0.90966 0.91315 1.25623 0.94816 0.95512 1.01833 1.70019 1.36581 1.23522 1.24593 0.85403 0.78076 0.78556 0.78943 1.18836 1.20960 1.20592 1.45386 1.63389 1.12830 1.06971 1.18952 0.84722 0.88870 0.85805 1.68183 1.28591 1.07281 1.30806 1.25234 0.85760 1.00758 0.81224 1.68866 1.21530 1.09864 1.29675 1.18589 0.92694 0.90301 0.91281 1.20534 1.01956 0.92024 0.99498 1.17307 0.99733 0.91406 0.81660 1.91558 1.86459 1.83816 1.48259 1.17117 1.07728 0.79497 0.94069 1.91533 1.90441 1.31907 1.97075 1.20728 0.95698 0.93461 0.98019 1.18821 1.11316 0.95937 0.95566 0.95870 0.94957 0.91257 0.92468 0.74907 0.76169 0.80330 0.81813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 9.27 71.98 0.67 -5.38 16 2 C 0.28 12.77 2.59 44.24 0.11 12.88 16 3 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 4 C -0.55 -27.13 8.73 25.60 0.22 -26.90 16 5 H 0.07 3.20 7.74 -2.91 -0.02 3.18 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -48.64 11.32 21.45 0.24 -48.39 16 8 Si 0.96 40.06 29.54 68.60 2.03 42.09 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.66 -24.63 5.13 -326.73 -1.68 -26.31 16 13 C 0.47 16.77 7.52 133.96 1.01 17.78 16 14 N -0.62 -22.78 9.33 -196.78 -1.84 -24.61 16 15 C 0.36 10.89 12.22 180.90 2.21 13.10 16 16 N -0.58 -17.18 10.45 -193.94 -2.03 -19.20 16 17 C 0.20 5.73 6.61 40.08 0.27 5.99 16 18 C -0.12 -2.81 9.96 22.31 0.22 -2.59 16 19 C 0.12 2.86 7.24 22.21 0.16 3.02 16 20 F -0.12 -2.82 17.14 44.97 0.77 -2.05 16 21 C 0.04 0.91 7.25 22.20 0.16 1.07 16 22 F -0.13 -3.28 17.14 44.97 0.77 -2.51 16 23 C -0.06 -1.47 9.49 22.29 0.21 -1.25 16 24 C -0.21 -6.21 5.76 -21.19 -0.12 -6.33 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 28 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.41 13.25 6.79 -92.71 -0.63 12.62 16 30 H 0.22 5.01 8.06 -2.91 -0.02 4.98 16 31 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 32 H 0.16 3.55 6.58 -2.91 -0.02 3.53 16 Total: -1.00 -56.40 288.78 4.40 -52.00 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.56 Total: 15.97 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.57 Total: 13.02 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.30 Total: -118.52 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.54 Total: -4.55 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -56.40 4.40 -52.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174715735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.918 kcal (2) G-P(sol) polarization free energy of solvation -56.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds