Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47528 * 2 1 4 4 C 1.50699 * 109.47075 * 120.00386 * 2 1 3 5 5 H 1.08005 * 119.99668 * 119.99742 * 4 2 1 6 6 C 1.37875 * 120.00263 * 299.99484 * 4 2 1 7 7 N 1.31512 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00243 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47495 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47305 * 120.00176 * 8 6 4 11 11 H 1.48504 * 109.47367 * 240.00097 * 8 6 4 12 12 N 1.46501 * 109.46876 * 240.00189 * 2 1 3 13 13 C 1.34781 * 120.00182 * 85.00268 * 12 2 1 14 14 O 1.21601 * 119.99688 * 359.97438 * 13 12 2 15 15 C 1.47432 * 120.00015 * 180.02562 * 13 12 2 16 16 C 1.39732 * 120.20934 * 354.95829 * 15 13 12 17 17 C 1.37752 * 119.92400 * 179.74925 * 16 15 13 18 18 C 1.38600 * 120.35326 * 0.52984 * 17 16 15 19 19 C 1.37960 * 120.42356 * 359.74329 * 18 17 16 20 20 N 1.48020 * 119.96756 * 179.97438 * 19 18 17 21 21 O 1.21805 * 120.00305 * 5.98844 * 20 19 18 22 22 O 1.21801 * 119.99818 * 185.98756 * 20 19 18 23 23 C 1.38953 * 120.06547 * 359.97438 * 19 18 17 24 24 N 1.38868 * 120.17703 * 179.97438 * 23 19 18 25 25 H 1.09004 * 109.46591 * 299.99900 * 1 2 3 26 26 H 1.08993 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46889 * 59.99506 * 1 2 3 28 28 H 0.97005 * 119.99810 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00105 * 265.00758 * 12 2 1 30 30 H 1.07995 * 120.03425 * 0.02562 * 16 15 13 31 31 H 1.07997 * 119.82047 * 180.27636 * 17 16 15 32 32 H 1.08003 * 119.78960 * 179.72303 * 18 17 16 33 33 H 0.97010 * 120.00113 * 214.69064 * 24 23 19 34 34 H 0.97003 * 120.00281 * 34.69254 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1484 -2.2859 3.6036 10 1 3.1474 -0.1861 4.8159 11 1 1.1679 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8575 1.1616 -2.4118 15 6 2.6379 -0.7133 -3.5611 16 6 3.0702 -2.0396 -3.4801 17 6 3.5228 -2.6851 -4.6097 18 6 3.5625 -2.0226 -5.8265 19 6 3.1445 -0.7113 -5.9219 20 7 3.1918 -0.0133 -7.2263 21 8 3.4952 -0.6261 -8.2344 22 8 2.9273 1.1738 -7.2917 23 6 2.6792 -0.0452 -4.7947 24 7 2.2584 1.2749 -4.8880 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 0.7084 1.1607 3.4845 29 1 2.2489 -1.6318 -1.1527 30 1 3.0452 -2.5594 -2.5338 31 1 3.8523 -3.7116 -4.5460 32 1 3.9233 -2.5361 -6.7055 33 1 2.4099 1.8856 -4.1497 34 1 1.8130 1.5863 -5.6915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176271685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -10.253485 kcal Electronic energy + Delta-G solvation = -21324.028868 eV Core-core repulsion = 17839.280985 eV Total energy + Delta-G solvation = -3484.747883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.21546 -40.23675 -38.22849 -36.70635 -35.35885 -34.41399 -32.79295 -31.88837 -29.76529 -28.60287 -26.33146 -25.38734 -24.06486 -22.48148 -21.35221 -20.03732 -19.06828 -18.65312 -17.66534 -17.41959 -17.09775 -16.81876 -15.78845 -15.64032 -14.91006 -14.78425 -14.47255 -14.20200 -13.38630 -13.10170 -12.72531 -12.43102 -12.38082 -11.84558 -11.57131 -11.25927 -11.19811 -11.15615 -11.07924 -10.89663 -10.65161 -10.41833 -10.35322 -9.70043 -9.37623 -9.17951 -8.69142 -8.27569 -8.00646 -6.23854 -4.34032 -0.15388 0.77389 1.29087 1.42630 2.84107 3.16310 3.24429 3.26341 3.58339 3.71612 3.75275 4.23816 4.38889 4.50700 4.70512 4.84637 4.92742 5.09214 5.33543 5.55731 5.70077 5.89715 6.07358 6.44223 6.68723 6.80849 6.99891 7.13634 7.27564 7.38956 7.54975 7.66958 7.74731 7.76222 8.01501 8.42011 8.61158 8.85858 9.33756 10.82119 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.003913 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.338502 B = 7153.308003 C = 7718.677102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.696 5.696 13 C 0.554 3.446 14 O -0.552 6.552 15 C -0.198 4.198 16 C 0.004 3.996 17 C -0.177 4.177 18 C -0.001 4.001 19 C -0.130 4.130 20 N 0.051 4.949 21 O -0.178 6.178 22 O -0.184 6.184 23 C 0.327 3.673 24 N -0.830 5.830 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.424 0.576 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -7.102 -12.798 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.343 5.343 13 C 0.340 3.660 14 O -0.432 6.432 15 C -0.207 4.207 16 C -0.016 4.016 17 C -0.198 4.198 18 C -0.021 4.021 19 C -0.221 4.221 20 N 0.562 4.438 21 O -0.390 6.390 22 O -0.391 6.391 23 C 0.209 3.791 24 N -0.378 5.378 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.263 0.737 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.640 -6.358 -12.032 14.087 hybrid contribution 0.282 -0.480 0.505 0.752 sum 3.923 -6.839 -11.526 13.965 Atomic orbital electron populations 1.22086 0.98185 0.99267 1.01071 1.18843 0.91191 0.94078 0.79594 0.93043 1.21211 1.32756 1.13393 0.90201 0.91947 1.24884 0.94695 0.94915 0.99128 1.69904 1.35628 1.22370 1.23969 0.86372 0.78643 0.79511 0.82446 1.19699 1.20811 1.20802 1.46467 1.64117 1.13546 1.10182 1.17721 0.78830 0.86624 0.82850 1.90573 1.52484 1.15658 1.84530 1.20076 1.11156 0.95265 0.94209 1.21692 0.88300 0.92174 0.99442 1.20878 1.06460 1.01512 0.90961 1.20966 0.91055 0.90280 0.99764 1.20776 1.21050 0.96681 0.83595 1.43357 0.97320 1.00648 1.02510 1.94505 1.51530 1.67728 1.25207 1.94409 1.53253 0.98789 1.92696 1.17276 0.85993 0.85749 0.90083 1.43318 1.62348 1.07431 1.24692 0.88956 0.95370 0.96587 0.92491 0.77763 0.83609 0.83474 0.83055 0.73700 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.26 37.16 0.34 -3.13 16 2 C 0.26 6.29 2.56 -69.08 -0.18 6.11 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.83 11.32 55.43 0.63 -23.21 16 8 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -13.17 5.02 -56.01 -0.28 -13.45 16 13 C 0.55 10.14 7.72 -12.51 -0.10 10.04 16 14 O -0.55 -11.67 13.55 5.28 0.07 -11.60 16 15 C -0.20 -2.83 5.89 -104.80 -0.62 -3.45 16 16 C 0.00 0.04 9.52 -39.20 -0.37 -0.33 16 17 C -0.18 -1.52 10.02 -39.63 -0.40 -1.92 16 18 C 0.00 -0.01 9.54 -39.55 -0.38 -0.39 16 19 C -0.13 -1.70 6.85 -79.78 -0.55 -2.24 16 20 N 0.05 0.73 4.45 34.04 0.15 0.88 16 21 O -0.18 -2.57 18.45 -29.46 -0.54 -3.11 16 22 O -0.18 -2.75 16.04 -29.46 -0.47 -3.23 16 23 C 0.33 4.64 6.74 -83.62 -0.56 4.07 16 24 N -0.83 -11.85 7.52 32.55 0.24 -11.61 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.39 6.13 6.59 -40.82 -0.27 5.86 16 30 H 0.15 1.25 6.44 -52.49 -0.34 0.91 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.15 1.20 7.60 -52.48 -0.40 0.80 16 33 H 0.42 6.53 6.42 -40.82 -0.26 6.26 16 34 H 0.41 5.37 6.64 -40.82 -0.27 5.10 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -29.37 297.07 -7.00 -36.38 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -3.06 Total: 13.07 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -3.20 Total: -3.31 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.74 Total: -47.39 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.94 Total: -17.94 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.37 -7.00 -36.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.123 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds