Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47528 * 2 1 4 4 C 1.50699 * 109.47075 * 120.00386 * 2 1 3 5 5 H 1.08005 * 119.99668 * 119.99742 * 4 2 1 6 6 C 1.37875 * 120.00263 * 299.99484 * 4 2 1 7 7 N 1.31512 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00243 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47495 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47305 * 120.00176 * 8 6 4 11 11 H 1.48504 * 109.47367 * 240.00097 * 8 6 4 12 12 N 1.46501 * 109.46876 * 240.00189 * 2 1 3 13 13 C 1.34781 * 120.00182 * 85.00268 * 12 2 1 14 14 O 1.21601 * 119.99688 * 359.97438 * 13 12 2 15 15 C 1.47432 * 120.00015 * 180.02562 * 13 12 2 16 16 C 1.39732 * 120.20934 * 354.95829 * 15 13 12 17 17 C 1.37752 * 119.92400 * 179.74925 * 16 15 13 18 18 C 1.38600 * 120.35326 * 0.52984 * 17 16 15 19 19 C 1.37960 * 120.42356 * 359.74329 * 18 17 16 20 20 N 1.48020 * 119.96756 * 179.97438 * 19 18 17 21 21 O 1.21805 * 120.00305 * 5.98844 * 20 19 18 22 22 O 1.21801 * 119.99818 * 185.98756 * 20 19 18 23 23 C 1.38953 * 120.06547 * 359.97438 * 19 18 17 24 24 N 1.38868 * 120.17703 * 179.97438 * 23 19 18 25 25 H 1.09004 * 109.46591 * 299.99900 * 1 2 3 26 26 H 1.08993 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46889 * 59.99506 * 1 2 3 28 28 H 0.97005 * 119.99810 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00105 * 265.00758 * 12 2 1 30 30 H 1.07995 * 120.03425 * 0.02562 * 16 15 13 31 31 H 1.07997 * 119.82047 * 180.27636 * 17 16 15 32 32 H 1.08003 * 119.78960 * 179.72303 * 18 17 16 33 33 H 0.97010 * 120.00113 * 214.69064 * 24 23 19 34 34 H 0.97003 * 120.00281 * 34.69254 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1484 -2.2859 3.6036 10 1 3.1474 -0.1861 4.8159 11 1 1.1679 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8575 1.1616 -2.4118 15 6 2.6379 -0.7133 -3.5611 16 6 3.0702 -2.0396 -3.4801 17 6 3.5228 -2.6851 -4.6097 18 6 3.5625 -2.0226 -5.8265 19 6 3.1445 -0.7113 -5.9219 20 7 3.1918 -0.0133 -7.2263 21 8 3.4952 -0.6261 -8.2344 22 8 2.9273 1.1738 -7.2917 23 6 2.6792 -0.0452 -4.7947 24 7 2.2584 1.2749 -4.8880 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 0.7084 1.1607 3.4845 29 1 2.2489 -1.6318 -1.1527 30 1 3.0452 -2.5594 -2.5338 31 1 3.8523 -3.7116 -4.5460 32 1 3.9233 -2.5361 -6.7055 33 1 2.4099 1.8856 -4.1497 34 1 1.8130 1.5863 -5.6915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -29.826119 kcal Electronic energy + Delta-G solvation = -21324.877601 eV Core-core repulsion = 17839.280985 eV Total energy + Delta-G solvation = -3485.596616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27664 -41.43001 -39.51144 -37.79234 -36.90196 -35.64939 -34.40007 -33.13187 -31.08167 -30.01553 -27.35178 -27.34493 -25.28834 -23.51105 -22.80555 -21.55642 -20.31898 -19.73156 -18.81099 -18.70076 -18.21077 -17.89376 -17.37688 -17.19427 -16.35856 -15.95808 -15.62207 -15.51905 -14.91550 -14.46328 -14.17421 -13.71001 -13.42721 -13.29374 -12.99836 -12.88902 -12.75234 -12.66823 -12.31036 -12.29069 -12.24665 -12.11196 -11.63763 -11.10530 -10.84446 -10.68158 -10.60757 -9.85543 -9.12214 -8.18081 -6.35427 -1.15490 -0.23585 0.32860 0.41506 1.45710 1.47519 1.58612 1.74625 2.27072 2.48611 2.54768 2.62146 3.13596 3.38530 3.61093 3.79513 3.93483 3.99901 4.37918 4.62599 4.75147 4.88962 4.92178 5.06279 5.08053 5.21482 5.39841 5.50030 5.55901 5.65954 5.86252 6.06853 6.15542 6.53922 6.61229 6.72467 6.85623 7.30049 7.45714 8.88384 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.003913 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.338502 B = 7153.308003 C = 7718.677102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.003 0.997 4 C -0.545 4.545 5 H 0.079 0.921 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.256 1.256 10 H -0.287 1.287 11 H -0.281 1.281 12 N -0.693 5.693 13 C 0.551 3.449 14 O -0.590 6.590 15 C -0.221 4.221 16 C 0.019 3.981 17 C -0.153 4.153 18 C 0.013 3.987 19 C -0.142 4.142 20 N 0.050 4.950 21 O -0.170 6.170 22 O -0.218 6.218 23 C 0.311 3.689 24 N -0.837 5.837 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.011 0.989 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.171 0.829 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.416 0.584 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -10.914 -13.234 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.021 0.979 4 C -0.583 4.583 5 H 0.097 0.903 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.179 1.179 10 H -0.213 1.213 11 H -0.207 1.207 12 N -0.341 5.341 13 C 0.339 3.661 14 O -0.473 6.473 15 C -0.230 4.230 16 C -0.001 4.001 17 C -0.173 4.173 18 C -0.007 4.007 19 C -0.233 4.233 20 N 0.558 4.442 21 O -0.386 6.386 22 O -0.418 6.418 23 C 0.194 3.806 24 N -0.385 5.385 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.188 0.812 31 H 0.214 0.786 32 H 0.198 0.802 33 H 0.253 0.747 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.107 -10.169 -12.500 16.904 hybrid contribution -0.129 0.626 0.553 0.845 sum 4.978 -9.543 -11.947 16.081 Atomic orbital electron populations 1.21909 0.98311 0.99567 0.99549 1.18393 0.91061 0.92137 0.81580 0.97937 1.21572 1.32554 1.13660 0.90511 0.90321 1.25783 0.94860 0.95541 1.02359 1.70059 1.37015 1.24008 1.24537 0.85302 0.78032 0.78602 0.78431 1.17925 1.21314 1.20698 1.46094 1.64606 1.14253 1.09161 1.18305 0.77828 0.86296 0.83658 1.90559 1.53896 1.17592 1.85265 1.19713 1.14207 0.96883 0.92205 1.22052 0.86269 0.90298 1.01469 1.21396 1.03832 1.03057 0.89027 1.21487 0.88918 0.88721 1.01547 1.20972 1.22228 0.97730 0.82373 1.43579 0.97013 1.00596 1.03009 1.94471 1.50857 1.67497 1.25753 1.94420 1.54876 0.99460 1.93015 1.17464 0.86661 0.85637 0.90806 1.43289 1.62943 1.07895 1.24364 0.91515 0.93943 0.97024 0.92621 0.75675 0.81190 0.78590 0.80238 0.74704 0.75472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 9.26 71.98 0.67 -5.84 16 2 C 0.27 13.20 2.56 44.24 0.11 13.31 16 3 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 4 C -0.54 -26.95 8.73 25.60 0.22 -26.72 16 5 H 0.08 3.55 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -50.83 11.32 21.45 0.24 -50.59 16 8 Si 0.97 39.92 29.54 68.60 2.03 41.95 16 9 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 10 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 12 N -0.69 -25.90 5.02 -449.36 -2.26 -28.16 16 13 C 0.55 20.36 7.72 86.66 0.67 21.03 16 14 O -0.59 -26.27 13.55 -4.03 -0.05 -26.32 16 15 C -0.22 -6.03 5.89 -19.98 -0.12 -6.14 16 16 C 0.02 0.32 9.52 22.52 0.21 0.53 16 17 C -0.15 -1.74 10.02 22.24 0.22 -1.51 16 18 C 0.01 0.20 9.54 22.29 0.21 0.41 16 19 C -0.14 -3.43 6.85 36.48 0.25 -3.18 16 20 N 0.05 1.40 4.45 -46.21 -0.21 1.20 16 21 O -0.17 -4.61 18.45 18.88 0.35 -4.26 16 22 O -0.22 -6.66 16.04 18.88 0.30 -6.35 16 23 C 0.31 8.70 6.74 38.71 0.26 8.96 16 24 N -0.84 -25.16 7.52 -50.95 -0.38 -25.54 16 25 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 29 H 0.41 11.93 6.59 -92.71 -0.61 11.32 16 30 H 0.17 2.06 6.44 -2.91 -0.02 2.04 16 31 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.18 1.84 7.60 -2.91 -0.02 1.82 16 33 H 0.42 13.81 6.42 -92.70 -0.60 13.21 16 34 H 0.41 11.53 6.64 -92.71 -0.62 10.92 16 Total: -1.00 -67.10 297.07 2.56 -64.54 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.63 Total: 31.50 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 3.16 Total: 2.04 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -2.60 Total: -103.09 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: 0.60 Total: -36.94 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -67.10 2.56 -64.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.714 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds