Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47209 * 2 1 4 4 C 1.50705 * 109.47352 * 240.00281 * 2 1 3 5 5 H 1.07999 * 119.99395 * 240.00059 * 4 2 1 6 6 C 1.37876 * 119.99989 * 59.99889 * 4 2 1 7 7 N 1.31513 * 119.99885 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99903 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47276 * 89.99982 * 8 6 4 10 10 H 1.48503 * 109.47144 * 210.00083 * 8 6 4 11 11 H 1.48505 * 109.47244 * 329.99930 * 8 6 4 12 12 N 1.46502 * 109.47277 * 119.99857 * 2 1 3 13 13 C 1.34775 * 120.00088 * 275.00146 * 12 2 1 14 14 O 1.21596 * 119.99903 * 0.02562 * 13 12 2 15 15 C 1.47438 * 119.99732 * 179.97438 * 13 12 2 16 16 C 1.39735 * 120.20631 * 354.20725 * 15 13 12 17 17 C 1.37752 * 119.92350 * 179.97438 * 16 15 13 18 18 C 1.38605 * 120.35167 * 0.02562 * 17 16 15 19 19 C 1.37960 * 120.42614 * 0.25077 * 18 17 16 20 20 N 1.48021 * 119.96937 * 179.75182 * 19 18 17 21 21 O 1.21800 * 119.99926 * 353.92354 * 20 19 18 22 22 O 1.21803 * 119.99791 * 173.92651 * 20 19 18 23 23 C 1.38962 * 120.06074 * 359.49178 * 19 18 17 24 24 N 1.38874 * 120.17286 * 180.25064 * 23 19 18 25 25 H 1.08993 * 109.46952 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47359 * 299.99961 * 1 2 3 27 27 H 1.09008 * 109.47031 * 59.99899 * 1 2 3 28 28 H 0.97007 * 120.00161 * 179.97438 * 7 6 4 29 29 H 0.97003 * 119.99521 * 94.99755 * 12 2 1 30 30 H 1.07992 * 120.04044 * 359.95630 * 16 15 13 31 31 H 1.07997 * 119.82199 * 180.02562 * 17 16 15 32 32 H 1.08001 * 119.79089 * 179.97438 * 18 17 16 33 33 H 0.96998 * 120.00342 * 325.80657 * 24 23 19 34 34 H 0.96997 * 119.99339 * 145.80868 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1615 -4.4119 10 1 2.4867 -0.1411 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8574 1.1615 2.4118 15 6 2.6380 -0.7134 3.5611 16 6 2.8561 -2.0934 3.5362 17 6 3.3154 -2.7370 4.6642 18 6 3.5626 -2.0230 5.8262 19 6 3.3468 -0.6610 5.8686 20 7 3.6089 0.0907 7.1165 21 8 3.9079 -0.5059 8.1354 22 8 3.5255 1.3058 7.1244 23 6 2.8889 0.0067 4.7392 24 7 2.6759 1.3785 4.7778 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4844 29 1 2.2490 -1.6318 1.1526 30 1 2.6645 -2.6549 2.6338 31 1 3.4838 -3.8035 4.6431 32 1 3.9222 -2.5368 6.7055 33 1 2.3588 1.7974 5.5931 34 1 2.8442 1.9176 3.9892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176271698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = -10.258051 kcal Electronic energy + Delta-G solvation = -21322.186889 eV Core-core repulsion = 17837.438809 eV Total energy + Delta-G solvation = -3484.748081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21761 -40.23179 -38.22317 -36.71025 -35.34806 -34.41927 -32.78911 -31.88606 -29.76245 -28.60491 -26.33201 -25.38307 -24.06591 -22.48617 -21.34145 -20.02737 -19.06041 -18.65387 -17.67285 -17.42068 -17.09663 -16.84257 -15.81469 -15.62815 -14.89736 -14.73866 -14.41684 -14.24998 -13.38221 -13.12049 -12.71547 -12.42077 -12.38970 -11.83572 -11.57309 -11.26473 -11.20338 -11.15783 -11.05781 -10.89266 -10.66932 -10.43640 -10.34464 -9.70411 -9.36024 -9.18179 -8.68740 -8.25866 -8.00744 -6.23445 -4.33733 -0.15429 0.77710 1.29011 1.42566 2.84022 3.17034 3.24447 3.25944 3.57032 3.73064 3.74654 4.24017 4.39102 4.50406 4.70674 4.84665 4.92956 5.09478 5.33119 5.55972 5.70060 5.89830 6.07268 6.44092 6.68888 6.81136 7.00031 7.14161 7.27018 7.39046 7.55157 7.66022 7.73044 7.76451 8.01601 8.42562 8.61324 8.86072 9.34009 10.82461 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.003909 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.403307 B = 7160.496964 C = 7657.713874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.697 5.697 13 C 0.553 3.447 14 O -0.550 6.550 15 C -0.198 4.198 16 C 0.004 3.996 17 C -0.178 4.178 18 C -0.001 4.001 19 C -0.131 4.131 20 N 0.051 4.949 21 O -0.178 6.178 22 O -0.185 6.185 23 C 0.327 3.673 24 N -0.828 5.828 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.092 0.908 28 H 0.266 0.734 29 H 0.388 0.612 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.410 0.590 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -7.125 12.857 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.344 5.344 13 C 0.338 3.662 14 O -0.431 6.431 15 C -0.207 4.207 16 C -0.016 4.016 17 C -0.198 4.198 18 C -0.021 4.021 19 C -0.221 4.221 20 N 0.562 4.438 21 O -0.389 6.389 22 O -0.392 6.392 23 C 0.209 3.791 24 N -0.374 5.374 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.245 0.755 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.386 -6.396 12.120 14.116 hybrid contribution 0.372 -0.467 -0.534 0.801 sum 3.757 -6.862 11.586 13.980 Atomic orbital electron populations 1.22089 0.98193 0.99266 1.01077 1.18836 0.91172 0.94068 0.79589 0.93060 1.21176 1.32820 1.13413 0.90216 0.92003 1.24881 0.94701 0.94899 0.99111 1.69893 1.35638 1.22275 1.24078 0.86427 0.79176 0.79293 0.82092 1.20477 1.20998 1.19810 1.46480 1.64142 1.13567 1.10171 1.17732 0.78880 0.86707 0.82865 1.90626 1.52206 1.15574 1.84672 1.20081 1.10889 0.94002 0.95699 1.21686 0.88634 0.92725 0.98578 1.20877 1.06103 1.00995 0.91854 1.20964 0.91356 0.90149 0.99594 1.20763 1.21341 0.93658 0.86358 1.43356 0.97358 1.00931 1.02180 1.94504 1.51302 1.70833 1.22309 1.94405 1.57052 0.96157 1.91577 1.17269 0.85999 0.85831 0.90003 1.43203 1.70386 1.03552 1.20298 0.95369 0.96571 0.88969 0.92436 0.77790 0.83630 0.83481 0.83054 0.75488 0.74054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.26 37.16 0.34 -3.13 16 2 C 0.26 6.30 2.56 -69.08 -0.18 6.12 16 3 H 0.05 1.41 7.58 -51.92 -0.39 1.02 16 4 C -0.54 -13.44 8.73 -34.44 -0.30 -13.74 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.85 11.32 55.43 0.63 -23.23 16 8 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 N -0.70 -13.17 5.02 -56.00 -0.28 -13.45 16 13 C 0.55 10.10 7.70 -12.51 -0.10 10.01 16 14 O -0.55 -11.66 13.64 5.28 0.07 -11.59 16 15 C -0.20 -2.82 5.89 -104.80 -0.62 -3.44 16 16 C 0.00 0.04 9.52 -39.20 -0.37 -0.33 16 17 C -0.18 -1.52 10.02 -39.62 -0.40 -1.92 16 18 C 0.00 -0.01 9.54 -39.55 -0.38 -0.39 16 19 C -0.13 -1.70 6.85 -79.78 -0.55 -2.24 16 20 N 0.05 0.73 4.45 34.04 0.15 0.88 16 21 O -0.18 -2.56 18.45 -29.46 -0.54 -3.10 16 22 O -0.18 -2.76 16.03 -29.46 -0.47 -3.23 16 23 C 0.33 4.63 6.74 -83.61 -0.56 4.07 16 24 N -0.83 -11.79 7.41 32.55 0.24 -11.55 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.38 6.07 -51.92 -0.32 2.07 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.39 6.12 6.60 -40.82 -0.27 5.85 16 30 H 0.15 1.24 6.45 -52.49 -0.34 0.90 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.15 1.20 7.60 -52.49 -0.40 0.80 16 33 H 0.41 5.40 6.60 -40.82 -0.27 5.13 16 34 H 0.42 6.43 6.66 -40.82 -0.27 6.16 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -29.43 297.26 -7.01 -36.44 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.07 Total: 12.97 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.20 Total: -3.35 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.74 Total: -47.35 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.94 Total: -17.93 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.43 -7.01 -36.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.183 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds