Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47209 * 2 1 4 4 C 1.50705 * 109.47352 * 240.00281 * 2 1 3 5 5 H 1.07999 * 119.99395 * 240.00059 * 4 2 1 6 6 C 1.37876 * 119.99989 * 59.99889 * 4 2 1 7 7 N 1.31513 * 119.99885 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99903 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47276 * 89.99982 * 8 6 4 10 10 H 1.48503 * 109.47144 * 210.00083 * 8 6 4 11 11 H 1.48505 * 109.47244 * 329.99930 * 8 6 4 12 12 N 1.46502 * 109.47277 * 119.99857 * 2 1 3 13 13 C 1.34775 * 120.00088 * 275.00146 * 12 2 1 14 14 O 1.21596 * 119.99903 * 0.02562 * 13 12 2 15 15 C 1.47438 * 119.99732 * 179.97438 * 13 12 2 16 16 C 1.39735 * 120.20631 * 354.20725 * 15 13 12 17 17 C 1.37752 * 119.92350 * 179.97438 * 16 15 13 18 18 C 1.38605 * 120.35167 * 0.02562 * 17 16 15 19 19 C 1.37960 * 120.42614 * 0.25077 * 18 17 16 20 20 N 1.48021 * 119.96937 * 179.75182 * 19 18 17 21 21 O 1.21800 * 119.99926 * 353.92354 * 20 19 18 22 22 O 1.21803 * 119.99791 * 173.92651 * 20 19 18 23 23 C 1.38962 * 120.06074 * 359.49178 * 19 18 17 24 24 N 1.38874 * 120.17286 * 180.25064 * 23 19 18 25 25 H 1.08993 * 109.46952 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47359 * 299.99961 * 1 2 3 27 27 H 1.09008 * 109.47031 * 59.99899 * 1 2 3 28 28 H 0.97007 * 120.00161 * 179.97438 * 7 6 4 29 29 H 0.97003 * 119.99521 * 94.99755 * 12 2 1 30 30 H 1.07992 * 120.04044 * 359.95630 * 16 15 13 31 31 H 1.07997 * 119.82199 * 180.02562 * 17 16 15 32 32 H 1.08001 * 119.79089 * 179.97438 * 18 17 16 33 33 H 0.96998 * 120.00342 * 325.80657 * 24 23 19 34 34 H 0.96997 * 119.99339 * 145.80868 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1615 -4.4119 10 1 2.4867 -0.1411 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8574 1.1615 2.4118 15 6 2.6380 -0.7134 3.5611 16 6 2.8561 -2.0934 3.5362 17 6 3.3154 -2.7370 4.6642 18 6 3.5626 -2.0230 5.8262 19 6 3.3468 -0.6610 5.8686 20 7 3.6089 0.0907 7.1165 21 8 3.9079 -0.5059 8.1354 22 8 3.5255 1.3058 7.1244 23 6 2.8889 0.0067 4.7392 24 7 2.6759 1.3785 4.7778 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4844 29 1 2.2490 -1.6318 1.1526 30 1 2.6645 -2.6549 2.6338 31 1 3.4838 -3.8035 4.6431 32 1 3.9222 -2.5368 6.7055 33 1 2.3588 1.7974 5.5931 34 1 2.8442 1.9176 3.9892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176271698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -29.891804 kcal Electronic energy + Delta-G solvation = -21323.038273 eV Core-core repulsion = 17837.438809 eV Total energy + Delta-G solvation = -3485.599464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27781 -41.42338 -39.50815 -37.79485 -36.89088 -35.65340 -34.39854 -33.12982 -31.07629 -30.01796 -27.34754 -27.34456 -25.28859 -23.51626 -22.79505 -21.53996 -20.31494 -19.73159 -18.81089 -18.70067 -18.21821 -17.91147 -17.38642 -17.21591 -16.33812 -15.84833 -15.63210 -15.54991 -14.91239 -14.46218 -14.19303 -13.71930 -13.41570 -13.28377 -13.01262 -12.87024 -12.72765 -12.66907 -12.31163 -12.29257 -12.24694 -12.14074 -11.65172 -11.11214 -10.83881 -10.67616 -10.59845 -9.84401 -9.11559 -8.17928 -6.35400 -1.15445 -0.23128 0.32904 0.41526 1.46496 1.47479 1.57432 1.74558 2.27284 2.49179 2.53931 2.62021 3.13551 3.38656 3.61006 3.80064 3.93531 4.00000 4.37807 4.62634 4.75635 4.89254 4.92409 5.06283 5.08530 5.21490 5.40402 5.49960 5.56129 5.66278 5.86731 6.07157 6.14326 6.53023 6.60630 6.72025 6.86337 7.29995 7.45802 8.88273 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.003909 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.403307 B = 7160.496964 C = 7657.713874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.693 5.693 13 C 0.550 3.450 14 O -0.589 6.589 15 C -0.221 4.221 16 C 0.019 3.981 17 C -0.153 4.153 18 C 0.013 3.987 19 C -0.142 4.142 20 N 0.051 4.949 21 O -0.170 6.170 22 O -0.218 6.218 23 C 0.311 3.689 24 N -0.835 5.835 25 H 0.042 0.958 26 H 0.011 0.989 27 H 0.066 0.934 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.171 0.829 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.411 0.589 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -10.996 13.359 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.186 1.186 12 N -0.342 5.342 13 C 0.338 3.662 14 O -0.472 6.472 15 C -0.230 4.230 16 C -0.001 4.001 17 C -0.173 4.173 18 C -0.007 4.007 19 C -0.233 4.233 20 N 0.558 4.442 21 O -0.386 6.386 22 O -0.418 6.418 23 C 0.194 3.806 24 N -0.381 5.381 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.188 0.812 31 H 0.214 0.786 32 H 0.198 0.802 33 H 0.246 0.754 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.526 -10.265 12.651 16.909 hybrid contribution 0.049 0.652 -0.598 0.886 sum 4.575 -9.613 12.053 16.082 Atomic orbital electron populations 1.21909 0.98260 0.99613 0.99551 1.18386 0.91084 0.92107 0.81559 0.97981 1.21540 1.32641 1.13685 0.90557 0.90411 1.25776 0.94856 0.95517 1.02330 1.70052 1.37021 1.23907 1.24604 0.85354 0.79074 0.77992 0.77978 1.19658 1.21639 1.18596 1.46107 1.64622 1.14282 1.09141 1.18310 0.77853 0.86365 0.83672 1.90609 1.53632 1.17537 1.85419 1.19714 1.13901 0.95528 0.93847 1.22051 0.86731 0.90903 1.00409 1.21395 1.03186 1.02921 0.89838 1.21485 0.89336 0.88646 1.01212 1.20961 1.22429 0.94678 0.85259 1.43579 0.97080 1.00917 1.02615 1.94470 1.50672 1.70634 1.22796 1.94416 1.58669 0.96795 1.91920 1.17459 0.86703 0.85651 0.90748 1.43179 1.70966 1.04093 1.19898 0.93868 0.97003 0.91540 0.92607 0.75700 0.81178 0.78595 0.80244 0.75351 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 9.26 71.98 0.67 -5.82 16 2 C 0.27 13.22 2.56 44.25 0.11 13.33 16 3 H 0.00 0.13 7.58 -2.38 -0.02 0.11 16 4 C -0.55 -27.07 8.73 25.60 0.22 -26.85 16 5 H 0.08 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -50.84 11.32 21.45 0.24 -50.60 16 8 Si 0.97 39.98 29.54 68.60 2.03 42.00 16 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 12 N -0.69 -25.91 5.02 -449.35 -2.25 -28.17 16 13 C 0.55 20.31 7.70 86.67 0.67 20.98 16 14 O -0.59 -26.27 13.64 -4.02 -0.05 -26.32 16 15 C -0.22 -6.02 5.89 -19.98 -0.12 -6.13 16 16 C 0.02 0.32 9.52 22.52 0.21 0.53 16 17 C -0.15 -1.74 10.02 22.24 0.22 -1.51 16 18 C 0.01 0.20 9.54 22.29 0.21 0.41 16 19 C -0.14 -3.44 6.85 36.48 0.25 -3.19 16 20 N 0.05 1.41 4.45 -46.20 -0.21 1.20 16 21 O -0.17 -4.61 18.45 18.89 0.35 -4.26 16 22 O -0.22 -6.67 16.03 18.88 0.30 -6.36 16 23 C 0.31 8.69 6.74 38.71 0.26 8.95 16 24 N -0.84 -25.05 7.41 -50.94 -0.38 -25.42 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 3.55 6.07 -2.38 -0.01 3.54 16 28 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 29 H 0.41 11.92 6.60 -92.71 -0.61 11.31 16 30 H 0.17 2.04 6.45 -2.91 -0.02 2.03 16 31 H 0.20 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.18 1.84 7.60 -2.91 -0.02 1.82 16 33 H 0.41 11.59 6.60 -92.71 -0.61 10.98 16 34 H 0.41 13.64 6.66 -92.71 -0.62 13.02 16 Total: -1.00 -67.21 297.26 2.54 -64.67 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.65 Total: 31.32 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 3.16 Total: 1.95 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -2.60 Total: -102.99 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: 0.60 Total: -36.95 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.00 kcal Total: -67.21 2.54 -64.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176271698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.775 kcal (2) G-P(sol) polarization free energy of solvation -67.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds