Wall clock time and date at job start Wed Apr 15 2020 11:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47405 * 2 1 4 4 C 1.50707 * 109.47028 * 240.00527 * 2 1 3 5 5 H 1.08001 * 120.00079 * 275.00958 * 4 2 1 6 6 C 1.37873 * 120.00233 * 94.99980 * 4 2 1 7 7 N 1.31508 * 120.00324 * 184.91337 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.91853 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 N 1.46495 * 109.47284 * 120.00688 * 2 1 3 13 13 C 1.34780 * 120.00018 * 275.00101 * 12 2 1 14 14 O 1.21596 * 119.99644 * 359.97438 * 13 12 2 15 15 C 1.47428 * 120.00053 * 180.02562 * 13 12 2 16 16 C 1.40386 * 120.20649 * 269.99391 * 15 13 12 17 17 N 1.38890 * 120.17259 * 359.95705 * 16 15 13 18 18 C 1.38914 * 119.65127 * 179.97438 * 16 15 13 19 19 C 1.37997 * 120.06514 * 359.97438 * 18 16 15 20 20 C 1.38565 * 120.42237 * 0.02562 * 19 18 16 21 21 C 1.37793 * 120.34960 * 359.74145 * 20 19 18 22 22 N 1.48020 * 120.03423 * 180.27871 * 21 20 19 23 23 O 1.21799 * 120.00398 * 0.21208 * 22 21 20 24 24 O 1.21800 * 119.99488 * 180.21391 * 22 21 20 25 25 H 1.09006 * 109.47034 * 55.03046 * 1 2 3 26 26 H 1.09002 * 109.47107 * 295.03658 * 1 2 3 27 27 H 1.08996 * 109.46930 * 175.03340 * 1 2 3 28 28 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99999 * 94.99759 * 12 2 1 30 30 H 0.97002 * 119.99615 * 0.02562 * 17 16 15 31 31 H 0.96995 * 119.99571 * 179.97438 * 17 16 15 32 32 H 1.07999 * 119.96327 * 179.97438 * 18 16 15 33 33 H 1.07995 * 119.78638 * 180.02562 * 19 18 16 34 34 H 1.07994 * 119.82413 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0185 2.3571 14 8 1.8583 1.1614 2.4117 15 6 2.6391 -0.7135 3.5606 16 6 1.7355 -1.3398 4.4335 17 7 0.3725 -1.3075 4.1685 18 6 2.2117 -1.9919 5.5639 19 6 3.5665 -2.0227 5.8249 20 6 4.4609 -1.4055 4.9653 21 6 4.0078 -0.7579 3.8366 22 7 4.9699 -0.1061 2.9198 23 8 6.1632 -0.1453 3.1609 24 8 4.5683 0.4694 1.9243 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 -1.0238 -0.0890 28 1 2.9363 -0.1045 -4.2556 29 1 2.2491 -1.6319 1.1524 30 1 0.0428 -0.8516 3.3783 31 1 -0.2495 -1.7414 4.7731 32 1 1.5210 -2.4751 6.2391 33 1 3.9318 -2.5313 6.7048 34 1 5.5190 -1.4352 5.1792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272423243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:41 Heat of formation + Delta-G solvation = -12.496258 kcal Electronic energy + Delta-G solvation = -22168.829501 eV Core-core repulsion = 18683.984365 eV Total energy + Delta-G solvation = -3484.845137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96065 -40.11428 -38.36892 -36.20769 -35.12101 -34.89117 -32.46601 -31.94208 -30.00728 -29.01845 -26.55318 -25.32305 -23.91965 -22.29876 -21.16622 -19.80056 -19.14014 -18.43069 -18.02798 -17.21767 -17.12753 -16.44378 -16.16457 -15.52535 -15.27538 -14.76972 -14.17551 -13.72124 -13.61055 -13.27299 -12.60799 -12.48758 -12.35627 -12.28509 -11.53460 -11.35373 -11.23133 -11.08731 -10.83368 -10.80442 -10.75194 -10.57293 -9.84345 -9.67317 -9.37520 -9.18422 -8.64214 -8.14900 -8.08221 -6.18154 -4.22112 -0.11285 0.87729 1.51710 1.56824 2.97394 3.15655 3.35842 3.40559 3.42843 3.50325 3.72975 4.33034 4.40241 4.66564 4.73921 4.81491 4.92008 5.16977 5.32651 5.54018 5.64900 5.83067 6.02233 6.30596 6.41655 6.59374 6.63190 6.89872 6.93978 7.12860 7.29977 7.37351 7.52242 7.90459 8.09614 8.52148 8.77349 8.85409 9.43761 10.93401 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.006445 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.284222 B = 4343.266228 C = 5095.681410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.232 3.768 3 H 0.056 0.944 4 C -0.528 4.528 5 H 0.077 0.923 6 C 0.084 3.916 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.684 5.684 13 C 0.552 3.448 14 O -0.537 6.537 15 C -0.144 4.144 16 C 0.253 3.747 17 N -0.855 5.855 18 C -0.157 4.157 19 C -0.060 4.060 20 C -0.121 4.121 21 C 0.033 3.967 22 N 0.018 4.982 23 O -0.167 6.167 24 O -0.118 6.118 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.391 0.609 30 H 0.409 0.591 31 H 0.407 0.593 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -5.395 19.581 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.074 0.926 4 C -0.566 4.566 5 H 0.095 0.905 6 C -0.120 4.120 7 N -0.524 5.524 8 Si 0.700 3.300 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.331 5.331 13 C 0.335 3.665 14 O -0.416 6.416 15 C -0.154 4.154 16 C 0.143 3.857 17 N -0.393 5.393 18 C -0.180 4.180 19 C -0.080 4.080 20 C -0.142 4.142 21 C -0.050 4.050 22 N 0.539 4.461 23 O -0.379 6.379 24 O -0.340 6.340 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.224 0.776 30 H 0.240 0.760 31 H 0.236 0.764 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.182 -4.847 19.821 20.651 hybrid contribution 0.107 0.609 -0.409 0.742 sum -3.075 -4.238 19.411 20.105 Atomic orbital electron populations 1.22249 0.98647 1.00529 0.99232 1.19196 0.90584 0.94824 0.82375 0.92639 1.20930 1.45486 0.95455 0.94745 0.90485 1.24911 0.93312 0.98708 0.95101 1.69874 1.44547 1.36275 1.01721 0.86907 0.80248 0.85791 0.77102 1.19182 1.21345 1.18624 1.46663 1.63662 1.13623 1.09145 1.17697 0.79059 0.86841 0.82888 1.90786 1.51382 1.14648 1.84775 1.19496 0.91000 1.04782 1.00126 1.17367 0.84733 0.91723 0.91879 1.42394 1.03148 1.62453 1.31283 1.20943 0.96667 1.03228 0.97196 1.20936 0.91820 0.96702 0.98513 1.20735 1.02315 0.98504 0.92660 1.20850 0.87714 1.02616 0.93859 1.43621 1.01567 0.99634 1.01263 1.94479 0.98927 1.65001 1.79463 1.94744 1.82940 1.40852 1.15429 0.92591 0.95522 0.93400 0.92229 0.77573 0.76007 0.76383 0.83995 0.83530 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.47 37.16 0.35 -2.76 16 2 C 0.23 5.56 2.22 -69.08 -0.15 5.41 16 3 H 0.06 1.48 4.73 -51.93 -0.25 1.24 16 4 C -0.53 -14.41 9.05 -34.44 -0.31 -14.72 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 7 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 8 Si 0.87 22.23 26.99 -169.99 -4.59 17.64 16 9 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.48 6.82 56.52 0.39 -6.10 16 12 N -0.68 -14.15 4.94 -56.01 -0.28 -14.43 16 13 C 0.55 11.08 3.36 -12.52 -0.04 11.04 16 14 O -0.54 -12.70 16.66 -3.04 -0.05 -12.75 16 15 C -0.14 -2.31 5.64 -104.80 -0.59 -2.91 16 16 C 0.25 2.95 6.76 -83.61 -0.57 2.39 16 17 N -0.86 -8.26 8.99 32.55 0.29 -7.97 16 18 C -0.16 -1.30 9.88 -39.42 -0.39 -1.68 16 19 C -0.06 -0.48 10.03 -39.55 -0.40 -0.88 16 20 C -0.12 -1.37 9.54 -39.62 -0.38 -1.75 16 21 C 0.03 0.53 6.88 -79.57 -0.55 -0.02 16 22 N 0.02 0.34 4.45 34.15 0.15 0.49 16 23 O -0.17 -3.10 18.44 -29.46 -0.54 -3.64 16 24 O -0.12 -2.72 16.27 -33.17 -0.54 -3.26 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.39 7.46 8.58 -40.82 -0.35 7.11 16 30 H 0.41 4.76 7.68 -40.82 -0.31 4.45 16 31 H 0.41 2.39 8.83 -40.82 -0.36 2.03 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.15 1.49 7.59 -52.49 -0.40 1.09 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -34.66 304.34 -6.67 -41.33 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.36 Total: 7.36 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.12 Total: -3.57 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.94 Total: -47.69 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.13 Total: -19.65 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.59 Total: 17.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.66 -6.67 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272423243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.832 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds