Wall clock time and date at job start Wed Apr 15 2020 11:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47405 * 2 1 4 4 C 1.50707 * 109.47028 * 240.00527 * 2 1 3 5 5 H 1.08001 * 120.00079 * 275.00958 * 4 2 1 6 6 C 1.37873 * 120.00233 * 94.99980 * 4 2 1 7 7 N 1.31508 * 120.00324 * 184.91337 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.91853 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 N 1.46495 * 109.47284 * 120.00688 * 2 1 3 13 13 C 1.34780 * 120.00018 * 275.00101 * 12 2 1 14 14 O 1.21596 * 119.99644 * 359.97438 * 13 12 2 15 15 C 1.47428 * 120.00053 * 180.02562 * 13 12 2 16 16 C 1.40386 * 120.20649 * 269.99391 * 15 13 12 17 17 N 1.38890 * 120.17259 * 359.95705 * 16 15 13 18 18 C 1.38914 * 119.65127 * 179.97438 * 16 15 13 19 19 C 1.37997 * 120.06514 * 359.97438 * 18 16 15 20 20 C 1.38565 * 120.42237 * 0.02562 * 19 18 16 21 21 C 1.37793 * 120.34960 * 359.74145 * 20 19 18 22 22 N 1.48020 * 120.03423 * 180.27871 * 21 20 19 23 23 O 1.21799 * 120.00398 * 0.21208 * 22 21 20 24 24 O 1.21800 * 119.99488 * 180.21391 * 22 21 20 25 25 H 1.09006 * 109.47034 * 55.03046 * 1 2 3 26 26 H 1.09002 * 109.47107 * 295.03658 * 1 2 3 27 27 H 1.08996 * 109.46930 * 175.03340 * 1 2 3 28 28 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99999 * 94.99759 * 12 2 1 30 30 H 0.97002 * 119.99615 * 0.02562 * 17 16 15 31 31 H 0.96995 * 119.99571 * 179.97438 * 17 16 15 32 32 H 1.07999 * 119.96327 * 179.97438 * 18 16 15 33 33 H 1.07995 * 119.78638 * 180.02562 * 19 18 16 34 34 H 1.07994 * 119.82413 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0185 2.3571 14 8 1.8583 1.1614 2.4117 15 6 2.6391 -0.7135 3.5606 16 6 1.7355 -1.3398 4.4335 17 7 0.3725 -1.3075 4.1685 18 6 2.2117 -1.9919 5.5639 19 6 3.5665 -2.0227 5.8249 20 6 4.4609 -1.4055 4.9653 21 6 4.0078 -0.7579 3.8366 22 7 4.9699 -0.1061 2.9198 23 8 6.1632 -0.1453 3.1609 24 8 4.5683 0.4694 1.9243 25 1 -0.3633 0.5890 -0.8422 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 -1.0238 -0.0890 28 1 2.9363 -0.1045 -4.2556 29 1 2.2491 -1.6319 1.1524 30 1 0.0428 -0.8516 3.3783 31 1 -0.2495 -1.7414 4.7731 32 1 1.5210 -2.4751 6.2391 33 1 3.9318 -2.5313 6.7048 34 1 5.5190 -1.4352 5.1792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272423243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:41 Heat of formation + Delta-G solvation = -39.727538 kcal Electronic energy + Delta-G solvation = -22170.010338 eV Core-core repulsion = 18683.984365 eV Total energy + Delta-G solvation = -3486.025973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.31644 -41.33301 -39.70699 -37.66497 -36.74197 -35.98496 -34.42617 -33.14729 -31.55502 -30.12987 -27.76985 -27.35442 -25.10702 -23.38980 -22.70187 -21.47392 -20.42110 -19.81279 -19.50952 -18.61537 -18.33753 -17.93394 -17.33238 -17.07317 -16.53132 -15.85513 -15.75604 -15.12383 -14.88793 -14.60334 -14.54473 -14.26070 -13.44580 -13.30608 -13.12936 -13.06274 -12.83328 -12.73843 -12.50191 -12.31272 -12.24236 -12.21250 -11.89251 -11.27112 -11.05632 -10.84386 -10.50549 -9.90148 -8.93768 -8.41560 -6.46613 -1.33629 0.00339 0.35197 0.37161 1.25654 1.33251 1.41461 1.50933 2.22343 2.26304 2.39896 2.59334 3.00417 3.49888 3.59268 3.77920 4.03132 4.05115 4.26874 4.45987 4.68400 4.70998 4.77638 4.85935 5.06191 5.08049 5.13826 5.31869 5.43457 5.45394 5.66447 6.05476 6.07409 6.40582 6.55043 6.65993 6.74589 7.16637 7.29358 8.73655 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.006445 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.284222 B = 4343.266228 C = 5095.681410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.235 3.765 3 H 0.025 0.975 4 C -0.524 4.524 5 H 0.055 0.945 6 C 0.037 3.963 7 N -0.928 5.928 8 Si 0.922 3.078 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.253 1.253 12 N -0.685 5.685 13 C 0.563 3.437 14 O -0.584 6.584 15 C -0.191 4.191 16 C 0.254 3.746 17 N -0.847 5.847 18 C -0.125 4.125 19 C -0.037 4.037 20 C -0.108 4.108 21 C 0.003 3.997 22 N 0.022 4.978 23 O -0.126 6.126 24 O -0.234 6.234 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.271 0.729 29 H 0.397 0.603 30 H 0.399 0.601 31 H 0.426 0.574 32 H 0.195 0.805 33 H 0.204 0.796 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 -7.371 24.201 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.132 3.868 3 H 0.043 0.957 4 C -0.562 4.562 5 H 0.073 0.927 6 C -0.163 4.163 7 N -0.566 5.566 8 Si 0.747 3.253 9 H -0.210 1.210 10 H -0.197 1.197 11 H -0.177 1.177 12 N -0.332 5.332 13 C 0.349 3.651 14 O -0.466 6.466 15 C -0.201 4.201 16 C 0.142 3.858 17 N -0.385 5.385 18 C -0.147 4.147 19 C -0.056 4.056 20 C -0.129 4.129 21 C -0.081 4.081 22 N 0.536 4.464 23 O -0.355 6.355 24 O -0.430 6.430 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.227 0.773 31 H 0.260 0.740 32 H 0.212 0.788 33 H 0.221 0.779 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.090 -6.778 24.324 25.580 hybrid contribution 0.453 0.983 -1.450 1.809 sum -3.637 -5.795 22.874 23.876 Atomic orbital electron populations 1.22092 0.96078 1.01644 0.99881 1.18950 0.92416 0.92931 0.82508 0.95708 1.21142 1.44487 0.94584 0.95997 0.92714 1.25533 0.93626 1.02115 0.95068 1.69958 1.46643 1.37618 1.02430 0.86133 0.79570 0.81875 0.77702 1.20959 1.19661 1.17740 1.46335 1.64170 1.13753 1.08912 1.18131 0.77195 0.86167 0.83619 1.90727 1.53223 1.16820 1.85798 1.19178 0.92043 1.08828 1.00064 1.17658 0.84739 0.91273 0.92090 1.42430 1.02952 1.61899 1.31177 1.21629 0.97858 0.99936 0.95290 1.21639 0.90984 0.94385 0.98627 1.21268 1.04189 0.96613 0.90825 1.21126 0.86845 1.05194 0.94952 1.44198 1.02068 0.98921 1.01243 1.94383 1.00133 1.62623 1.78405 1.94764 1.83254 1.46101 1.18875 0.93183 0.93800 0.91780 0.91999 0.76870 0.77251 0.74015 0.78800 0.77904 0.81131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.47 71.98 0.68 -5.19 16 2 C 0.24 11.78 2.22 44.25 0.10 11.88 16 3 H 0.02 1.41 4.73 -2.39 -0.01 1.39 16 4 C -0.52 -29.94 9.05 25.60 0.23 -29.71 16 5 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 6 C 0.04 2.21 5.47 84.65 0.46 2.68 16 7 N -0.93 -57.66 13.96 21.44 0.30 -57.36 16 8 Si 0.92 47.95 26.99 68.60 1.85 49.81 16 9 H -0.28 -15.37 7.11 99.48 0.71 -14.67 16 10 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.25 -12.69 6.82 99.48 0.68 -12.02 16 12 N -0.68 -29.73 4.94 -449.37 -2.22 -31.95 16 13 C 0.56 23.52 3.36 86.66 0.29 23.82 16 14 O -0.58 -29.15 16.66 3.94 0.07 -29.08 16 15 C -0.19 -6.02 5.64 -19.98 -0.11 -6.14 16 16 C 0.25 5.06 6.76 38.71 0.26 5.33 16 17 N -0.85 -13.86 8.99 -50.93 -0.46 -14.32 16 18 C -0.12 -1.21 9.88 22.37 0.22 -0.99 16 19 C -0.04 -0.33 10.03 22.29 0.22 -0.11 16 20 C -0.11 -1.98 9.54 22.24 0.21 -1.77 16 21 C 0.00 0.09 6.88 36.62 0.25 0.34 16 22 N 0.02 0.89 4.45 -45.87 -0.20 0.68 16 23 O -0.13 -4.67 18.44 18.89 0.35 -4.32 16 24 O -0.23 -11.76 16.27 22.43 0.36 -11.40 16 25 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 29 H 0.40 15.97 8.58 -92.71 -0.80 15.18 16 30 H 0.40 8.73 7.68 -92.71 -0.71 8.02 16 31 H 0.43 3.18 8.83 -92.71 -0.82 2.36 16 32 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.17 2.50 7.59 -2.91 -0.02 2.48 16 Total: -1.00 -85.06 304.34 1.71 -83.36 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -1.17 Total: 14.44 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 2.82 Total: 0.14 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -2.58 Total: -102.95 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: 0.78 Total: -44.80 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.85 Total: 49.81 kcal Total: -85.06 1.71 -83.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272423243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.630 kcal (2) G-P(sol) polarization free energy of solvation -85.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds