Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46969 * 2 1 4 4 C 1.33300 * 120.00416 * 268.83145 * 3 2 1 5 5 H 1.07997 * 120.00579 * 190.91344 * 4 3 2 6 6 C 1.46791 * 119.99658 * 10.91886 * 4 3 2 7 7 N 1.29316 * 120.00173 * 8.44546 * 6 4 3 8 8 Si 1.86801 * 119.99902 * 188.45201 * 6 4 3 9 9 H 1.48499 * 109.46952 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47204 * 119.99634 * 8 6 4 11 11 H 1.48500 * 109.46971 * 239.99701 * 8 6 4 12 12 C 1.34779 * 120.00125 * 88.83106 * 3 2 1 13 13 O 1.21518 * 120.00465 * 185.49360 * 12 3 2 14 14 C 1.47252 * 119.99494 * 5.21740 * 12 3 2 15 15 C 1.39848 * 120.21882 * 55.28265 * 14 12 3 16 16 C 1.37694 * 119.91882 * 179.78457 * 15 14 12 17 17 N 1.48015 * 119.81941 * 180.22630 * 16 15 14 18 18 O 1.31694 * 120.00282 * 180.23529 * 17 16 15 19 19 O 1.31704 * 119.99604 * 0.24060 * 17 16 15 20 20 C 1.38667 * 120.36859 * 0.47107 * 16 15 14 21 21 C 1.37948 * 120.44170 * 359.77864 * 20 16 15 22 22 C 1.38955 * 120.07164 * 359.97438 * 21 20 16 23 23 N 1.38799 * 120.18323 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47449 * 59.99697 * 1 2 3 25 25 H 1.09006 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46725 * 299.98883 * 1 2 3 27 27 H 1.09005 * 109.47159 * 240.00929 * 2 1 3 28 28 H 1.09000 * 109.47872 * 120.00469 * 2 1 3 29 29 H 0.96997 * 120.00146 * 179.97438 * 7 6 4 30 30 H 1.07994 * 120.04002 * 0.02562 * 15 14 12 31 31 H 1.07995 * 119.77615 * 179.76539 * 20 16 15 32 32 H 1.08000 * 119.95851 * 179.97438 * 21 20 16 33 33 H 0.96998 * 120.00379 * 185.09641 * 23 22 21 34 34 H 0.97002 * 119.99715 * 5.10164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0019 -1.1541 5 1 2.7848 2.9472 -1.1590 6 6 1.8219 1.4004 -2.4185 7 7 1.0577 0.3572 -2.4066 8 14 2.3651 2.1417 -4.0448 9 1 3.2289 3.3217 -3.7869 10 1 3.1269 1.1299 -4.8202 11 1 1.1707 2.5631 -4.8202 12 6 2.2204 2.0246 1.1670 13 8 2.5291 3.1999 1.1674 14 6 2.0614 1.3046 2.4416 15 6 2.7826 0.1308 2.6818 16 6 2.6324 -0.5350 3.8776 17 7 3.4006 -1.7745 4.1315 18 8 3.2563 -2.4167 5.2721 19 8 4.2286 -2.2350 3.2166 20 6 1.7617 -0.0536 4.8435 21 6 1.0390 1.1000 4.6204 22 6 1.1802 1.7893 3.4222 23 7 0.4537 2.9500 3.1951 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.7662 -0.0400 -3.2421 30 1 3.4594 -0.2509 1.9317 31 1 1.6485 -0.5855 5.7766 32 1 0.3627 1.4677 5.3780 33 1 0.4976 3.3885 2.3310 34 1 -0.0979 3.3228 3.9006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786825184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 36.617902 kcal Electronic energy + Delta-G solvation = -22066.214812 eV Core-core repulsion = 18583.499425 eV Total energy + Delta-G solvation = -3482.715387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.34936 -38.66087 -37.69353 -35.41394 -34.53617 -34.01822 -32.37560 -31.13341 -29.76443 -29.65036 -25.63699 -25.28086 -23.53405 -22.19965 -21.92663 -19.84163 -18.03249 -17.88003 -17.28947 -16.99419 -16.67971 -16.19073 -15.56447 -14.95754 -14.42590 -14.29285 -14.04471 -13.64422 -13.31723 -13.09887 -12.90022 -12.82271 -11.97991 -11.65637 -11.51787 -11.32703 -11.02431 -10.95844 -10.88746 -10.74904 -10.47605 -10.34258 -10.33660 -10.15660 -9.24225 -9.02454 -8.59652 -8.18966 -7.83430 -6.69296 -3.86750 -0.24370 1.07332 1.54377 1.57317 2.90833 3.07891 3.13310 3.34057 3.71322 3.77391 3.90574 4.48878 4.57428 4.77382 4.85313 5.06068 5.14334 5.37903 5.68917 5.77966 5.88510 6.00202 6.05066 6.20500 6.42464 6.48861 6.51703 6.66435 6.92352 7.18506 7.23243 7.25423 7.43984 7.62414 7.80813 8.24707 8.90747 9.18337 9.84860 10.22010 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.005916 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.487135 B = 4732.082101 C = 5432.993990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.102 3.898 3 N -0.389 5.389 4 C -0.334 4.334 5 H 0.112 0.888 6 C 0.037 3.963 7 N -0.830 5.830 8 Si 0.934 3.066 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.436 3.564 13 O -0.600 6.600 14 C -0.155 4.155 15 C 0.013 3.987 16 C -0.072 4.072 17 N 0.006 4.994 18 O -0.210 6.210 19 O -0.199 6.199 20 C -0.005 4.005 21 C -0.207 4.207 22 C 0.305 3.695 23 N -0.832 5.832 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.018 0.982 27 H 0.114 0.886 28 H 0.038 0.962 29 H 0.278 0.722 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.419 0.581 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 0.389 7.690 9.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 N -0.101 5.101 4 C -0.464 4.464 5 H 0.130 0.870 6 C -0.175 4.175 7 N -0.464 5.464 8 Si 0.760 3.240 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.227 3.773 13 O -0.490 6.490 14 C -0.165 4.165 15 C -0.009 4.009 16 C -0.163 4.163 17 N 0.475 4.525 18 O -0.396 6.396 19 O -0.387 6.387 20 C -0.026 4.026 21 C -0.231 4.231 22 C 0.189 3.811 23 N -0.367 5.367 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.132 0.868 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.252 0.748 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.945 1.287 7.358 8.958 hybrid contribution 0.108 -0.053 -0.703 0.714 sum -4.837 1.235 6.655 8.319 Atomic orbital electron populations 1.22057 0.96320 1.00031 1.01275 1.21927 0.95034 0.83567 1.01606 1.42730 1.51286 1.11243 1.04853 1.20754 1.36266 1.07700 0.81662 0.86997 1.26921 0.94670 0.95595 1.00294 1.69106 1.28454 1.19936 1.28936 0.85710 0.78911 0.79612 0.79769 1.18586 1.20199 1.20411 1.17093 0.90973 0.86938 0.82253 1.90587 1.56755 1.15479 1.86167 1.19720 1.01269 0.97337 0.98127 1.21002 0.95081 0.91145 0.93699 1.19898 1.06072 0.90183 1.00160 1.50355 0.99090 1.01858 1.01210 1.96206 1.73676 1.60169 1.09526 1.96269 1.32679 1.72178 1.37541 1.20695 0.90326 0.93949 0.97588 1.20452 1.06792 0.97934 0.97916 1.18065 0.86116 0.85274 0.91679 1.42715 1.48872 1.25723 1.19368 0.89280 0.94123 0.96284 0.86809 0.94339 0.90943 0.82830 0.83253 0.83803 0.74792 0.76969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.60 37.16 0.36 -2.42 16 2 C 0.10 2.17 5.13 -4.04 -0.02 2.15 16 3 N -0.39 -9.18 2.53 -114.54 -0.29 -9.47 16 4 C -0.33 -8.46 9.69 -13.46 -0.13 -8.59 16 5 H 0.11 3.02 7.30 -52.49 -0.38 2.64 16 6 C 0.04 0.85 5.42 -15.16 -0.08 0.77 16 7 N -0.83 -18.89 7.73 56.00 0.43 -18.46 16 8 Si 0.93 18.55 29.65 -169.99 -5.04 13.51 16 9 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 12 C 0.44 9.93 6.29 -12.60 -0.08 9.85 16 13 O -0.60 -15.34 15.62 5.35 0.08 -15.26 16 14 C -0.16 -2.89 4.95 -104.79 -0.52 -3.41 16 15 C 0.01 0.23 7.07 -39.18 -0.28 -0.05 16 16 C -0.07 -1.20 6.88 -79.99 -0.55 -1.75 16 17 N 0.01 0.11 4.98 33.94 0.17 0.27 16 18 O -0.21 -3.85 19.13 -31.56 -0.60 -4.46 16 19 O -0.20 -3.98 19.13 -31.57 -0.60 -4.58 16 20 C 0.00 -0.06 9.56 -39.53 -0.38 -0.44 16 21 C -0.21 -2.49 9.88 -39.42 -0.39 -2.88 16 22 C 0.30 4.57 6.76 -83.60 -0.56 4.01 16 23 N -0.83 -10.84 8.91 32.56 0.29 -10.55 16 24 H 0.09 1.97 6.20 -51.93 -0.32 1.65 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.11 2.62 5.78 -51.93 -0.30 2.32 16 28 H 0.04 0.76 4.46 -51.93 -0.23 0.53 16 29 H 0.28 5.91 8.26 -40.82 -0.34 5.58 16 30 H 0.15 2.88 6.95 -52.49 -0.36 2.52 16 31 H 0.15 1.66 7.56 -52.49 -0.40 1.26 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.42 6.52 7.03 -40.82 -0.29 6.23 16 34 H 0.40 3.52 8.84 -40.82 -0.36 3.16 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -28.66 296.94 -6.77 -35.43 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -3.05 Total: 11.86 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.63 Total: -2.77 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.60 Total: -38.21 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.12 Total: -24.30 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.04 Total: 13.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.66 -6.77 -35.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786825184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.045 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds