Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46969 * 2 1 4 4 C 1.33300 * 120.00416 * 268.83145 * 3 2 1 5 5 H 1.07997 * 120.00579 * 190.91344 * 4 3 2 6 6 C 1.46791 * 119.99658 * 10.91886 * 4 3 2 7 7 N 1.29316 * 120.00173 * 8.44546 * 6 4 3 8 8 Si 1.86801 * 119.99902 * 188.45201 * 6 4 3 9 9 H 1.48499 * 109.46952 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47204 * 119.99634 * 8 6 4 11 11 H 1.48500 * 109.46971 * 239.99701 * 8 6 4 12 12 C 1.34779 * 120.00125 * 88.83106 * 3 2 1 13 13 O 1.21518 * 120.00465 * 185.49360 * 12 3 2 14 14 C 1.47252 * 119.99494 * 5.21740 * 12 3 2 15 15 C 1.39848 * 120.21882 * 55.28265 * 14 12 3 16 16 C 1.37694 * 119.91882 * 179.78457 * 15 14 12 17 17 N 1.48015 * 119.81941 * 180.22630 * 16 15 14 18 18 O 1.31694 * 120.00282 * 180.23529 * 17 16 15 19 19 O 1.31704 * 119.99604 * 0.24060 * 17 16 15 20 20 C 1.38667 * 120.36859 * 0.47107 * 16 15 14 21 21 C 1.37948 * 120.44170 * 359.77864 * 20 16 15 22 22 C 1.38955 * 120.07164 * 359.97438 * 21 20 16 23 23 N 1.38799 * 120.18323 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47449 * 59.99697 * 1 2 3 25 25 H 1.09006 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46725 * 299.98883 * 1 2 3 27 27 H 1.09005 * 109.47159 * 240.00929 * 2 1 3 28 28 H 1.09000 * 109.47872 * 120.00469 * 2 1 3 29 29 H 0.96997 * 120.00146 * 179.97438 * 7 6 4 30 30 H 1.07994 * 120.04002 * 0.02562 * 15 14 12 31 31 H 1.07995 * 119.77615 * 179.76539 * 20 16 15 32 32 H 1.08000 * 119.95851 * 179.97438 * 21 20 16 33 33 H 0.96998 * 120.00379 * 185.09641 * 23 22 21 34 34 H 0.97002 * 119.99715 * 5.10164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0019 -1.1541 5 1 2.7848 2.9472 -1.1590 6 6 1.8219 1.4004 -2.4185 7 7 1.0577 0.3572 -2.4066 8 14 2.3651 2.1417 -4.0448 9 1 3.2289 3.3217 -3.7869 10 1 3.1269 1.1299 -4.8202 11 1 1.1707 2.5631 -4.8202 12 6 2.2204 2.0246 1.1670 13 8 2.5291 3.1999 1.1674 14 6 2.0614 1.3046 2.4416 15 6 2.7826 0.1308 2.6818 16 6 2.6324 -0.5350 3.8776 17 7 3.4006 -1.7745 4.1315 18 8 3.2563 -2.4167 5.2721 19 8 4.2286 -2.2350 3.2166 20 6 1.7617 -0.0536 4.8435 21 6 1.0390 1.1000 4.6204 22 6 1.1802 1.7893 3.4222 23 7 0.4537 2.9500 3.1951 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.7662 -0.0400 -3.2421 30 1 3.4594 -0.2509 1.9317 31 1 1.6485 -0.5855 5.7766 32 1 0.3627 1.4677 5.3780 33 1 0.4976 3.3885 2.3310 34 1 -0.0979 3.3228 3.9006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786825184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 18.348911 kcal Electronic energy + Delta-G solvation = -22067.007015 eV Core-core repulsion = 18583.499425 eV Total energy + Delta-G solvation = -3483.507590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75076 -40.20372 -39.12693 -37.15142 -35.83927 -35.42807 -34.13575 -32.49964 -31.35830 -31.02151 -27.13972 -26.81770 -24.97875 -23.83454 -23.24687 -21.38560 -19.54122 -19.25082 -18.82075 -18.38308 -17.90826 -17.84316 -16.95550 -16.66716 -16.03164 -15.72318 -15.30004 -15.09060 -14.79258 -14.66142 -14.32929 -14.22152 -13.68399 -13.23032 -12.97711 -12.92118 -12.60107 -12.36417 -12.26897 -12.17377 -12.13013 -12.10558 -11.81423 -11.80680 -10.92869 -10.54250 -10.27580 -9.94487 -9.04251 -8.47143 -5.76836 -1.64969 -0.15326 0.23919 0.26627 1.29989 1.42263 1.52729 1.86557 2.21035 2.36374 2.58500 2.92357 2.98237 3.41569 3.53108 3.75532 3.85139 4.05751 4.35071 4.41982 4.59291 4.70193 4.73621 4.81413 4.82478 4.94960 5.05812 5.13863 5.30162 5.46091 5.74043 5.76394 5.92216 6.03027 6.41777 6.63819 7.08968 7.40584 8.06149 8.42736 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.005916 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.487135 B = 4732.082101 C = 5432.993990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.106 3.894 3 N -0.401 5.401 4 C -0.384 4.384 5 H 0.081 0.919 6 C 0.014 3.986 7 N -0.833 5.833 8 Si 0.994 3.006 9 H -0.275 1.275 10 H -0.267 1.267 11 H -0.267 1.267 12 C 0.436 3.564 13 O -0.638 6.638 14 C -0.185 4.185 15 C 0.011 3.989 16 C -0.085 4.085 17 N 0.011 4.989 18 O -0.185 6.185 19 O -0.272 6.272 20 C 0.014 3.986 21 C -0.178 4.178 22 C 0.311 3.689 23 N -0.816 5.816 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.286 0.714 30 H 0.130 0.870 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.409 0.591 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 0.400 10.004 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 N -0.112 5.112 4 C -0.513 4.513 5 H 0.099 0.901 6 C -0.197 4.197 7 N -0.467 5.467 8 Si 0.817 3.183 9 H -0.200 1.200 10 H -0.192 1.192 11 H -0.192 1.192 12 C 0.228 3.772 13 O -0.530 6.530 14 C -0.194 4.194 15 C -0.010 4.010 16 C -0.177 4.177 17 N 0.473 4.527 18 O -0.380 6.380 19 O -0.442 6.442 20 C -0.006 4.006 21 C -0.201 4.201 22 C 0.193 3.807 23 N -0.350 5.350 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.218 0.782 33 H 0.239 0.761 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.150 1.251 9.573 12.014 hybrid contribution 0.657 0.056 -1.217 1.384 sum -6.493 1.307 8.356 10.663 Atomic orbital electron populations 1.21892 0.95013 1.00961 1.00515 1.21872 0.95987 0.82579 1.01189 1.42831 1.51723 1.11881 1.04803 1.20552 1.39260 1.07914 0.83553 0.90139 1.27525 0.94239 0.95842 1.02104 1.69146 1.27681 1.19776 1.30050 0.84872 0.78598 0.78522 0.76355 1.19985 1.19198 1.19202 1.17698 0.89374 0.86743 0.83415 1.90535 1.58002 1.17322 1.87154 1.19374 1.04336 0.98252 0.97485 1.20745 0.94854 0.91226 0.94225 1.20076 1.07162 0.89748 1.00715 1.50549 0.98994 1.02265 1.00878 1.96159 1.72556 1.60017 1.09241 1.96291 1.35587 1.73893 1.38442 1.21189 0.88082 0.93840 0.97526 1.20981 1.05888 0.96106 0.97086 1.18301 0.85036 0.85642 0.91750 1.42770 1.47924 1.24678 1.19591 0.91492 0.92210 0.95417 0.88840 0.93128 0.90096 0.85180 0.79770 0.78169 0.76093 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.60 71.98 0.69 -4.31 16 2 C 0.11 4.67 5.13 86.38 0.44 5.12 16 3 N -0.40 -19.77 2.53 -634.59 -1.60 -21.37 16 4 C -0.38 -20.52 9.69 86.71 0.84 -19.68 16 5 H 0.08 4.69 7.30 -2.91 -0.02 4.67 16 6 C 0.01 0.68 5.42 87.30 0.47 1.15 16 7 N -0.83 -38.45 7.73 23.26 0.18 -38.27 16 8 Si 0.99 38.80 29.65 68.60 2.03 40.83 16 9 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 11 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 12 C 0.44 20.52 6.29 86.61 0.55 21.07 16 13 O -0.64 -34.00 15.62 -3.77 -0.06 -34.06 16 14 C -0.19 -6.82 4.95 -19.98 -0.10 -6.92 16 15 C 0.01 0.41 7.07 22.53 0.16 0.57 16 16 C -0.08 -2.67 6.88 36.35 0.25 -2.42 16 17 N 0.01 0.39 4.98 -46.53 -0.23 0.16 16 18 O -0.18 -6.33 19.13 3.52 0.07 -6.27 16 19 O -0.27 -11.42 19.13 3.51 0.07 -11.36 16 20 C 0.01 0.31 9.56 22.30 0.21 0.53 16 21 C -0.18 -3.22 9.88 22.37 0.22 -2.99 16 22 C 0.31 8.35 6.76 38.75 0.26 8.61 16 23 N -0.82 -18.72 8.91 -50.92 -0.45 -19.18 16 24 H 0.07 2.97 6.20 -2.39 -0.01 2.96 16 25 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 4.47 5.78 -2.38 -0.01 4.45 16 28 H 0.05 2.07 4.46 -2.39 -0.01 2.06 16 29 H 0.29 12.12 8.26 -92.71 -0.77 11.35 16 30 H 0.13 5.24 6.95 -2.91 -0.02 5.22 16 31 H 0.19 2.85 7.56 -2.91 -0.02 2.82 16 32 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.41 12.17 7.03 -92.71 -0.65 11.52 16 34 H 0.42 5.49 8.84 -92.71 -0.82 4.67 16 Total: -1.00 -67.23 296.94 3.72 -63.51 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.28 Total: 25.27 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.00 Total: 0.72 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.11 Total: -78.65 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: 0.08 Total: -51.68 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -67.23 3.72 -63.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786825184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.861 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds