Wall clock time and date at job start Wed Apr 15 2020 11:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 N 1.46505 * 109.46949 * 120.00123 * 2 1 3 5 5 C 1.34778 * 119.99679 * 274.99469 * 4 2 1 6 6 O 1.21571 * 120.00315 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99794 * 180.02562 * 5 4 2 8 8 C 1.39242 * 119.99999 * 174.85228 * 7 5 4 9 9 C 1.39687 * 119.57480 * 185.33456 * 8 7 5 10 10 C 1.38641 * 119.49620 * 179.97438 * 9 8 7 11 11 C 1.38358 * 118.67277 * 0.02562 * 10 9 8 12 12 C 1.40571 * 119.12694 * 359.97438 * 11 10 9 13 13 C 1.41331 * 119.78594 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00340 * 359.97438 * 13 12 11 15 15 C 1.40029 * 120.00184 * 180.02562 * 13 12 11 16 16 N 1.30742 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00228 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47169 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47148 * 119.99929 * 17 15 13 20 20 H 1.48501 * 109.47297 * 239.99893 * 17 15 13 21 21 N 1.31897 * 119.57645 * 5.05254 * 8 7 5 22 22 C 1.50700 * 109.47138 * 239.99660 * 2 1 3 23 23 O 1.20820 * 120.00072 * 240.00365 * 22 2 1 24 24 O 1.34234 * 119.99604 * 59.99852 * 22 2 1 25 25 H 1.08993 * 109.46894 * 60.00208 * 1 2 3 26 26 H 1.09008 * 109.46906 * 299.99839 * 1 2 3 27 27 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99736 * 94.99882 * 4 2 1 29 29 H 0.97004 * 119.99797 * 354.84817 * 7 5 4 30 30 H 1.08006 * 120.25494 * 359.95347 * 9 8 7 31 31 H 1.08002 * 120.66829 * 180.02562 * 10 9 8 32 32 H 1.07996 * 120.43910 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00235 * 179.97438 * 16 15 13 34 34 H 0.96704 * 116.99640 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1612 2.4118 7 7 2.5968 -0.6535 3.4575 8 6 2.8319 0.0632 4.6279 9 6 3.4029 -0.5811 5.7280 10 6 3.6367 0.1342 6.8923 11 6 3.2939 1.4741 6.9285 12 6 2.7224 2.0652 5.7883 13 6 2.3674 3.4330 5.8097 14 1 2.5350 4.0206 6.7003 15 6 1.7973 4.0263 4.6766 16 7 1.5939 3.3149 3.5987 17 14 1.3274 5.8340 4.7051 18 1 1.6583 6.4105 6.0330 19 1 2.0810 6.5580 3.6500 20 1 -0.1299 5.9707 4.4548 21 7 2.5177 1.3431 4.6818 22 6 2.0324 -0.7105 -1.2304 23 8 2.7269 -1.6928 -1.1195 24 8 1.7080 -0.2519 -2.4496 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6318 1.1526 29 1 2.7567 -1.6100 3.4340 30 1 3.6600 -1.6286 5.6720 31 1 4.0777 -0.3449 7.7540 32 1 3.4631 2.0583 7.8209 33 1 1.1987 3.7258 2.8138 34 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574261336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:41 Heat of formation + Delta-G solvation = -54.519146 kcal Electronic energy + Delta-G solvation = -21646.076643 eV Core-core repulsion = 18159.409257 eV Total energy + Delta-G solvation = -3486.667386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63965 -39.38526 -37.75976 -36.35674 -34.92724 -33.90995 -32.99229 -30.68290 -30.21680 -28.61639 -25.55611 -25.07076 -22.52270 -21.38252 -20.77639 -19.85360 -18.49531 -17.96195 -17.54803 -16.38872 -15.95409 -15.86593 -15.01796 -14.65124 -14.45991 -14.31243 -13.76698 -13.50013 -13.17390 -12.85896 -12.77272 -12.29723 -12.03668 -11.91052 -11.75686 -11.56930 -11.15862 -10.91915 -10.61099 -10.57515 -10.44996 -9.89326 -9.72299 -9.19956 -9.02810 -8.68536 -7.93541 -7.21326 -6.93692 -6.09866 -4.36778 2.00605 2.55114 2.84592 3.13506 3.19340 3.22743 3.28836 3.36963 4.08736 4.14628 4.66273 4.94536 4.96999 5.11115 5.20753 5.67993 5.80394 6.06621 6.11881 6.22731 6.27432 6.49334 6.61230 6.73925 6.83166 6.87440 7.24793 7.34133 7.63373 7.67130 7.74276 7.83938 8.18515 8.30631 8.62709 8.80931 9.08238 9.51741 10.27966 10.51387 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.005878 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.304478 B = 4762.744664 C = 6244.356383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.180 3.820 3 H 0.128 0.872 4 N -0.749 5.749 5 C 0.670 3.330 6 O -0.460 6.460 7 N -0.670 5.670 8 C 0.386 3.614 9 C -0.356 4.356 10 C -0.036 4.036 11 C -0.306 4.306 12 C 0.271 3.729 13 C -0.425 4.425 14 H 0.082 0.918 15 C 0.057 3.943 16 N -0.650 5.650 17 Si 0.894 3.106 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 N -0.471 5.471 22 C 0.480 3.520 23 O -0.515 6.515 24 O -0.510 6.510 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.394 0.606 29 H 0.397 0.603 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 -6.691 -9.963 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.072 3.928 3 H 0.145 0.855 4 N -0.411 5.411 5 C 0.368 3.632 6 O -0.323 6.323 7 N -0.318 5.318 8 C 0.146 3.854 9 C -0.383 4.383 10 C -0.060 4.060 11 C -0.329 4.329 12 C 0.146 3.854 13 C -0.456 4.456 14 H 0.100 0.900 15 C -0.172 4.172 16 N -0.268 5.268 17 Si 0.719 3.281 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.201 1.201 21 N -0.190 5.190 22 C 0.321 3.679 23 O -0.403 6.403 24 O -0.321 6.321 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.229 0.771 29 H 0.230 0.770 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.678 -5.115 -10.535 12.014 hybrid contribution 0.708 -1.117 0.119 1.328 sum -1.970 -6.233 -10.417 12.298 Atomic orbital electron populations 1.22149 0.92288 1.02689 1.04429 1.19953 0.95632 0.97672 0.79577 0.85451 1.45111 1.74205 1.13847 1.07986 1.16285 0.80775 0.86242 0.79874 1.91397 1.48424 1.10794 1.81710 1.42482 1.68999 1.10591 1.09714 1.18323 0.92700 0.91008 0.83322 1.20439 1.22057 0.99463 0.96292 1.20545 0.96041 0.94021 0.95376 1.21625 1.15164 0.95474 1.00657 1.18388 0.88124 0.93088 0.85781 1.19608 1.33774 0.93272 0.98918 0.89960 1.26184 0.96054 0.99210 0.95773 1.70357 1.21910 1.34318 1.00265 0.86488 0.78696 0.83672 0.79278 1.18646 1.20126 1.20100 1.68669 1.22553 1.01795 1.25948 1.23724 0.76647 0.82369 0.85149 1.90702 1.35953 1.26459 1.87149 1.84532 1.72084 1.58938 1.16564 0.90691 0.89658 0.92410 0.77108 0.77001 0.89103 0.88610 0.88581 0.91748 0.73088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.42 37.16 0.35 -1.52 16 2 C 0.18 2.43 3.09 -69.08 -0.21 2.21 16 3 H 0.13 1.91 7.58 -51.93 -0.39 1.51 16 4 N -0.75 -11.48 4.96 -59.81 -0.30 -11.78 16 5 C 0.67 13.58 8.49 -86.92 -0.74 12.84 16 6 O -0.46 -11.30 11.76 5.30 0.06 -11.24 16 7 N -0.67 -13.38 5.39 -15.79 -0.09 -13.47 16 8 C 0.39 9.47 7.43 -155.00 -1.15 8.32 16 9 C -0.36 -8.06 9.95 -38.89 -0.39 -8.44 16 10 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 11 C -0.31 -7.73 9.83 -38.66 -0.38 -8.11 16 12 C 0.27 7.63 6.55 -85.00 -0.56 7.08 16 13 C -0.43 -11.69 9.14 -37.74 -0.34 -12.04 16 14 H 0.08 2.13 7.85 -52.48 -0.41 1.71 16 15 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 16 N -0.65 -17.80 8.98 55.55 0.50 -17.30 16 17 Si 0.89 19.16 29.56 -169.99 -5.02 14.13 16 18 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 N -0.47 -13.22 5.73 -10.26 -0.06 -13.28 16 22 C 0.48 5.74 7.69 36.01 0.28 6.01 16 23 O -0.51 -7.33 16.59 -18.74 -0.31 -7.64 16 24 O -0.51 -4.50 13.33 -39.27 -0.52 -5.02 16 25 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 26 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.39 5.32 7.81 -40.82 -0.32 5.00 16 29 H 0.40 6.21 8.71 -40.82 -0.36 5.86 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 34 H 0.41 1.77 9.10 45.56 0.41 2.18 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -34.16 302.78 -7.55 -41.71 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -2.73 Total: 12.77 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.64 Total: 6.54 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.06 Total: -55.82 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.77 Total: -23.90 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.16 -7.55 -41.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574261336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.807 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds