Wall clock time and date at job start Wed Apr 15 2020 11:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 N 1.46505 * 109.46949 * 120.00123 * 2 1 3 5 5 C 1.34778 * 119.99679 * 274.99469 * 4 2 1 6 6 O 1.21571 * 120.00315 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99794 * 180.02562 * 5 4 2 8 8 C 1.39242 * 119.99999 * 174.85228 * 7 5 4 9 9 C 1.39687 * 119.57480 * 185.33456 * 8 7 5 10 10 C 1.38641 * 119.49620 * 179.97438 * 9 8 7 11 11 C 1.38358 * 118.67277 * 0.02562 * 10 9 8 12 12 C 1.40571 * 119.12694 * 359.97438 * 11 10 9 13 13 C 1.41331 * 119.78594 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00340 * 359.97438 * 13 12 11 15 15 C 1.40029 * 120.00184 * 180.02562 * 13 12 11 16 16 N 1.30742 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00228 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47169 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47148 * 119.99929 * 17 15 13 20 20 H 1.48501 * 109.47297 * 239.99893 * 17 15 13 21 21 N 1.31897 * 119.57645 * 5.05254 * 8 7 5 22 22 C 1.50700 * 109.47138 * 239.99660 * 2 1 3 23 23 O 1.20820 * 120.00072 * 240.00365 * 22 2 1 24 24 O 1.34234 * 119.99604 * 59.99852 * 22 2 1 25 25 H 1.08993 * 109.46894 * 60.00208 * 1 2 3 26 26 H 1.09008 * 109.46906 * 299.99839 * 1 2 3 27 27 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99736 * 94.99882 * 4 2 1 29 29 H 0.97004 * 119.99797 * 354.84817 * 7 5 4 30 30 H 1.08006 * 120.25494 * 359.95347 * 9 8 7 31 31 H 1.08002 * 120.66829 * 180.02562 * 10 9 8 32 32 H 1.07996 * 120.43910 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00235 * 179.97438 * 16 15 13 34 34 H 0.96704 * 116.99640 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1612 2.4118 7 7 2.5968 -0.6535 3.4575 8 6 2.8319 0.0632 4.6279 9 6 3.4029 -0.5811 5.7280 10 6 3.6367 0.1342 6.8923 11 6 3.2939 1.4741 6.9285 12 6 2.7224 2.0652 5.7883 13 6 2.3674 3.4330 5.8097 14 1 2.5350 4.0206 6.7003 15 6 1.7973 4.0263 4.6766 16 7 1.5939 3.3149 3.5987 17 14 1.3274 5.8340 4.7051 18 1 1.6583 6.4105 6.0330 19 1 2.0810 6.5580 3.6500 20 1 -0.1299 5.9707 4.4548 21 7 2.5177 1.3431 4.6818 22 6 2.0324 -0.7105 -1.2304 23 8 2.7269 -1.6928 -1.1195 24 8 1.7080 -0.2519 -2.4496 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6318 1.1526 29 1 2.7567 -1.6100 3.4340 30 1 3.6600 -1.6286 5.6720 31 1 4.0777 -0.3449 7.7540 32 1 3.4631 2.0583 7.8209 33 1 1.1987 3.7258 2.8138 34 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574261336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:41 Heat of formation + Delta-G solvation = -79.468925 kcal Electronic energy + Delta-G solvation = -21647.158547 eV Core-core repulsion = 18159.409257 eV Total energy + Delta-G solvation = -3487.749289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72855 -40.90875 -39.49485 -37.27831 -36.33330 -35.62006 -34.82464 -32.25506 -31.93596 -30.34118 -27.42464 -26.15449 -24.11596 -23.16535 -22.15699 -21.31338 -19.98749 -19.27422 -18.91158 -18.07748 -17.25395 -17.00914 -16.45258 -16.24126 -16.14391 -15.86179 -15.56429 -14.83877 -14.65276 -14.44279 -14.20294 -13.71376 -13.60862 -13.26011 -12.88457 -12.70201 -12.67137 -12.58793 -12.50770 -12.29002 -11.71565 -11.60375 -11.51510 -10.91759 -10.85549 -10.08932 -9.85045 -9.10655 -8.78150 -7.99673 -6.37472 0.98186 1.04406 1.30252 1.39764 1.42980 1.54664 1.56987 2.18175 2.30038 2.52968 3.05860 3.27983 3.98028 4.05532 4.09935 4.18512 4.37847 4.70236 4.73637 4.80172 4.88819 4.99450 5.07831 5.22809 5.30414 5.44947 5.53415 5.68449 5.85287 5.94485 6.02102 6.30836 6.43362 6.84319 6.88774 7.09600 7.17988 7.93865 8.39075 8.61752 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.005878 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.304478 B = 4762.744664 C = 6244.356383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.173 3.827 3 H 0.110 0.890 4 N -0.731 5.731 5 C 0.666 3.334 6 O -0.505 6.505 7 N -0.660 5.660 8 C 0.365 3.635 9 C -0.346 4.346 10 C -0.033 4.033 11 C -0.330 4.330 12 C 0.237 3.763 13 C -0.465 4.465 14 H 0.084 0.916 15 C 0.011 3.989 16 N -0.683 5.683 17 Si 0.973 3.027 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.270 1.270 21 N -0.504 5.504 22 C 0.496 3.504 23 O -0.537 6.537 24 O -0.498 6.498 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.406 0.594 29 H 0.417 0.583 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 -7.840 -10.769 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.065 3.935 3 H 0.128 0.872 4 N -0.393 5.393 5 C 0.365 3.635 6 O -0.372 6.372 7 N -0.310 5.310 8 C 0.125 3.875 9 C -0.372 4.372 10 C -0.057 4.057 11 C -0.353 4.353 12 C 0.112 3.888 13 C -0.496 4.496 14 H 0.102 0.898 15 C -0.215 4.215 16 N -0.302 5.302 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.195 1.195 21 N -0.223 5.223 22 C 0.338 3.662 23 O -0.428 6.428 24 O -0.312 6.312 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.243 0.757 29 H 0.254 0.746 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -2.617 -6.345 -11.396 13.304 hybrid contribution 0.737 -0.942 0.311 1.236 sum -1.879 -7.287 -11.086 13.398 Atomic orbital electron populations 1.22047 0.90920 1.03518 1.04022 1.20035 0.96712 0.96887 0.79832 0.87236 1.44820 1.73181 1.14174 1.07164 1.16471 0.80324 0.85942 0.80805 1.91390 1.50269 1.12908 1.82586 1.42339 1.68585 1.11422 1.08674 1.18810 0.92729 0.90732 0.85245 1.20905 1.19761 1.01207 0.95293 1.21013 0.94814 0.93108 0.96809 1.21807 1.16128 0.97034 1.00357 1.18870 0.89022 0.93953 0.86971 1.19913 1.35881 0.93934 0.99880 0.89761 1.27005 0.95595 1.03869 0.95012 1.70537 1.22748 1.36198 1.00725 0.85303 0.78355 0.77552 0.79373 1.17986 1.19676 1.19482 1.68634 1.23696 1.03537 1.26477 1.23113 0.75991 0.81545 0.85530 1.90705 1.37016 1.27431 1.87605 1.84467 1.71593 1.58854 1.16259 0.88445 0.92661 0.90889 0.75689 0.74559 0.85165 0.84544 0.87802 0.91853 0.70325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.42 71.98 0.68 -2.70 16 2 C 0.17 4.57 3.09 44.24 0.14 4.70 16 3 H 0.11 3.36 7.58 -2.39 -0.02 3.34 16 4 N -0.73 -22.01 4.96 -461.42 -2.29 -24.30 16 5 C 0.67 27.28 8.49 179.05 1.52 28.80 16 6 O -0.50 -25.72 11.76 -3.94 -0.05 -25.77 16 7 N -0.66 -26.02 5.39 -322.13 -1.74 -27.75 16 8 C 0.36 17.84 7.43 133.27 0.99 18.83 16 9 C -0.35 -14.92 9.95 22.72 0.23 -14.69 16 10 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 11 C -0.33 -16.80 9.83 22.87 0.22 -16.57 16 12 C 0.24 13.78 6.55 40.19 0.26 14.04 16 13 C -0.47 -26.59 9.14 23.47 0.21 -26.37 16 14 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 15 C 0.01 0.60 5.50 85.29 0.47 1.07 16 16 N -0.68 -38.96 8.98 21.84 0.20 -38.77 16 17 Si 0.97 40.57 29.56 68.60 2.03 42.60 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 N -0.50 -29.06 5.73 -186.37 -1.07 -30.13 16 22 C 0.50 10.93 7.69 71.24 0.55 11.48 16 23 O -0.54 -14.25 16.59 21.98 0.36 -13.88 16 24 O -0.50 -7.42 13.33 -51.45 -0.69 -8.11 16 25 H 0.10 1.79 8.11 -2.39 -0.02 1.77 16 26 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.41 10.37 7.81 -92.71 -0.72 9.65 16 29 H 0.42 12.32 8.71 -92.71 -0.81 11.52 16 30 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 33 H 0.27 14.41 8.29 -92.71 -0.77 13.64 16 34 H 0.43 2.32 9.10 -74.05 -0.67 1.64 16 Total: -1.00 -76.74 302.78 1.24 -75.50 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -1.02 Total: 33.25 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.50 Total: 17.36 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -4.90 Total: -120.95 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.37 Total: -47.76 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -76.74 1.24 -75.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574261336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.967 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds