Wall clock time and date at job start Wed Apr 15 2020 11:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34957 * 125.63395 * 2 1 4 4 C 1.35568 * 108.99717 * 180.26876 * 3 2 1 5 5 N 1.48015 * 126.07607 * 179.72840 * 4 3 2 6 6 O 1.31700 * 120.00246 * 179.97438 * 5 4 3 7 7 O 1.31707 * 119.99890 * 0.02562 * 5 4 3 8 8 C 1.39723 * 107.85491 * 359.72386 * 4 3 2 9 9 C 1.37706 * 125.63715 * 179.79713 * 2 1 3 10 10 C 1.46409 * 126.27480 * 0.02562 * 9 2 1 11 11 O 1.21650 * 119.99755 * 346.73288 * 10 9 2 12 12 N 1.34775 * 120.00790 * 166.73190 * 10 9 2 13 13 C 1.33222 * 120.00574 * 174.58676 * 12 10 9 14 14 H 1.08003 * 120.00314 * 214.91013 * 13 12 10 15 15 C 1.46786 * 119.99833 * 34.91136 * 13 12 10 16 16 N 1.29317 * 119.99858 * 195.75885 * 15 13 12 17 17 Si 1.86799 * 120.00216 * 15.75757 * 15 13 12 18 18 H 1.48492 * 109.47185 * 261.69087 * 17 15 13 19 19 H 1.48498 * 109.46922 * 21.69287 * 17 15 13 20 20 H 1.48500 * 109.47316 * 141.68934 * 17 15 13 21 21 C 1.46507 * 119.99470 * 354.59106 * 12 10 9 22 22 C 1.53000 * 117.49929 * 180.21708 * 21 12 10 23 23 C 1.52992 * 117.50052 * 111.59218 * 21 12 10 24 24 H 1.08996 * 109.47559 * 267.96920 * 1 2 3 25 25 H 1.09007 * 109.46761 * 27.96880 * 1 2 3 26 26 H 1.09004 * 109.46850 * 147.96146 * 1 2 3 27 27 H 1.08000 * 125.50547 * 359.97438 * 3 2 1 28 28 H 1.07994 * 126.52244 * 179.97438 * 8 4 3 29 29 H 0.96999 * 120.00044 * 180.02562 * 16 15 13 30 30 H 1.09005 * 115.54751 * 325.92132 * 21 12 10 31 31 H 1.08999 * 117.49731 * 359.97438 * 22 21 12 32 32 H 1.08999 * 117.50160 * 145.01335 * 22 21 12 33 33 H 1.09002 * 117.49831 * 214.97585 * 23 21 12 34 34 H 1.09001 * 117.50023 * 0.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5502 0.7087 -0.0060 5 7 4.7278 1.6054 -0.0137 6 8 5.9427 1.0970 -0.0186 7 8 4.5607 2.9119 -0.0147 8 6 3.5799 -0.6882 -0.0035 9 6 2.2674 -1.1192 0.0040 10 6 1.8128 -2.5109 0.0084 11 8 0.6491 -2.7699 0.2506 12 7 2.6834 -3.5052 -0.2559 13 6 2.2972 -4.7755 -0.1465 14 1 2.9942 -5.5239 0.2007 15 6 0.9243 -5.1580 -0.4980 16 7 0.4531 -6.2997 -0.1149 17 14 -0.1421 -3.9956 -1.4985 18 1 -1.0381 -3.2385 -0.5880 19 1 0.7239 -3.0465 -2.2429 20 1 -0.9599 -4.7780 -2.4600 21 6 4.0547 -3.1889 -0.6634 22 6 4.9935 -4.3615 -0.9542 23 6 5.1792 -3.5297 0.3164 24 1 -0.3634 -0.0364 1.0270 25 1 -0.3633 0.9077 -0.4820 26 1 -0.3633 -0.8712 -0.5452 27 1 1.9022 2.1189 -0.0004 28 1 4.4612 -1.3123 -0.0073 29 1 -0.4540 -6.5527 -0.3475 30 1 4.1697 -2.2896 -1.2686 31 1 4.5910 -5.3682 -0.8419 32 1 5.7263 -4.2340 -1.7510 33 1 6.0343 -2.8548 0.3555 34 1 4.8989 -3.9895 1.2640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521592617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:35 Heat of formation + Delta-G solvation = 109.275124 kcal Electronic energy + Delta-G solvation = -22328.144480 eV Core-core repulsion = 18848.579746 eV Total energy + Delta-G solvation = -3479.564733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.93413 -39.32002 -38.28586 -36.80150 -34.06555 -33.43860 -33.15283 -32.13401 -30.09683 -27.81406 -25.43094 -25.15526 -22.88807 -22.09911 -20.94236 -20.73573 -19.83788 -18.41317 -17.66453 -17.05131 -16.40563 -16.09875 -15.95325 -15.30055 -15.01272 -14.71628 -14.37178 -13.93073 -13.59713 -13.45136 -12.76035 -12.62728 -12.47993 -12.37657 -11.70046 -11.40684 -11.19482 -11.08839 -10.88044 -10.51953 -10.44040 -10.26951 -10.11462 -9.96032 -9.31994 -8.96747 -8.84551 -8.32751 -8.06257 -6.61609 -4.13755 -0.15920 1.35610 1.46243 2.34100 2.58002 3.24319 3.33943 3.48998 3.81292 4.01029 4.22738 4.43389 4.53561 4.61195 4.74743 4.83896 5.02754 5.19191 5.21460 5.30692 5.38893 5.49062 5.59557 5.66981 5.85589 6.00404 6.08655 6.32406 6.41200 6.56306 6.61016 6.74452 7.12514 7.13724 7.54080 8.22888 8.57483 8.86796 9.49633 10.27097 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.007344 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.876119 B = 3811.735568 C = 4965.971627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.390 5.390 3 C 0.093 3.907 4 C -0.085 4.085 5 N 0.030 4.970 6 O -0.191 6.191 7 O -0.213 6.213 8 C -0.142 4.142 9 C 0.034 3.966 10 C 0.434 3.566 11 O -0.563 6.563 12 N -0.349 5.349 13 C -0.368 4.368 14 H 0.109 0.891 15 C 0.081 3.919 16 N -0.809 5.809 17 Si 1.008 2.992 18 H -0.265 1.265 19 H -0.305 1.305 20 H -0.336 1.336 21 C 0.033 3.967 22 C -0.166 4.166 23 C -0.192 4.192 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.193 0.807 28 H 0.183 0.817 29 H 0.287 0.713 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 9.102 -1.539 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.063 5.063 3 C -0.051 4.051 4 C -0.182 4.182 5 N 0.500 4.500 6 O -0.380 6.380 7 O -0.396 6.396 8 C -0.166 4.166 9 C -0.079 4.079 10 C 0.232 3.768 11 O -0.458 6.458 12 N -0.057 5.057 13 C -0.496 4.496 14 H 0.126 0.874 15 C -0.139 4.139 16 N -0.437 5.437 17 Si 0.850 3.150 18 H -0.195 1.195 19 H -0.234 1.234 20 H -0.271 1.271 21 C -0.072 4.072 22 C -0.204 4.204 23 C -0.231 4.231 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.210 0.790 28 H 0.200 0.800 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.129 8.375 -1.373 8.488 hybrid contribution 0.005 0.795 -0.336 0.863 sum 0.134 9.170 -1.709 9.329 Atomic orbital electron populations 1.22486 0.73941 1.05505 1.05397 1.44023 1.08112 1.04573 1.49593 1.21524 0.88285 0.93424 1.01906 1.19351 0.83718 0.90071 1.25081 1.49503 1.03156 1.02516 0.94858 1.96257 1.04979 1.79867 1.56911 1.96234 1.94411 0.90959 1.58045 1.21914 0.97696 0.91003 1.05976 1.20833 0.87979 0.89327 1.09724 1.16472 0.87930 0.82004 0.90402 1.90084 1.16434 1.81137 1.58174 1.41695 1.07742 1.05751 1.50540 1.19920 0.97832 0.83458 1.48362 0.87362 1.27462 0.97418 0.95623 0.93394 1.68691 1.16984 1.22461 1.35580 0.84109 0.78843 0.77694 0.74391 1.19489 1.23369 1.27147 1.22506 0.81781 1.00245 1.02630 1.23282 1.00694 0.97823 0.98577 1.23428 0.99812 1.04121 0.95692 0.89153 0.89296 0.87277 0.78970 0.80041 0.90139 0.85598 0.86849 0.88611 0.88243 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 10.39 59.85 0.62 1.46 16 2 N -0.39 -5.97 3.15 -120.36 -0.38 -6.35 16 3 C 0.09 1.26 11.05 -17.13 -0.19 1.07 16 4 C -0.09 -1.38 7.17 -80.35 -0.58 -1.96 16 5 N 0.03 0.52 4.98 33.77 0.17 0.69 16 6 O -0.19 -3.53 19.78 -31.57 -0.62 -4.15 16 7 O -0.21 -3.72 19.76 -31.57 -0.62 -4.35 16 8 C -0.14 -2.42 8.48 -39.06 -0.33 -2.76 16 9 C 0.03 0.64 6.70 -81.97 -0.55 0.09 16 10 C 0.43 9.79 5.88 -12.97 -0.08 9.72 16 11 O -0.56 -13.94 8.24 5.23 0.04 -13.90 16 12 N -0.35 -7.84 2.63 -107.76 -0.28 -8.12 16 13 C -0.37 -9.35 9.23 -13.50 -0.12 -9.48 16 14 H 0.11 2.81 6.74 -52.48 -0.35 2.45 16 15 C 0.08 2.17 5.19 -15.16 -0.08 2.09 16 16 N -0.81 -21.98 13.88 56.00 0.78 -21.21 16 17 Si 1.01 24.64 23.93 -169.99 -4.07 20.58 16 18 H -0.27 -6.54 6.24 56.52 0.35 -6.19 16 19 H -0.30 -7.48 6.78 56.52 0.38 -7.09 16 20 H -0.34 -8.12 7.11 56.52 0.40 -7.72 16 21 C 0.03 0.59 4.33 -67.93 -0.29 0.29 16 22 C -0.17 -2.63 9.76 -26.73 -0.26 -2.89 16 23 C -0.19 -2.95 9.45 -26.74 -0.25 -3.21 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.09 0.73 8.13 -51.93 -0.42 0.30 16 26 H 0.11 1.70 6.68 -51.93 -0.35 1.35 16 27 H 0.19 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.18 2.95 4.27 -52.49 -0.22 2.73 16 29 H 0.29 7.23 8.26 -40.82 -0.34 6.89 16 30 H 0.13 2.09 5.70 -51.93 -0.30 1.80 16 31 H 0.11 1.99 6.44 -51.93 -0.33 1.66 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 34 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -30.82 290.87 -6.00 -36.83 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.29 Total: 1.15 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.11 Total: -5.56 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.28 Total: -34.98 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.21 Total: -22.39 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.07 Total: 20.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.82 -6.00 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521592617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.100 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds