Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34957 * 125.63395 * 2 1 4 4 C 1.35568 * 108.99717 * 180.26876 * 3 2 1 5 5 N 1.48015 * 126.07607 * 179.72840 * 4 3 2 6 6 O 1.31700 * 120.00246 * 179.97438 * 5 4 3 7 7 O 1.31707 * 119.99890 * 0.02562 * 5 4 3 8 8 C 1.39723 * 107.85491 * 359.72386 * 4 3 2 9 9 C 1.37706 * 125.63715 * 179.79713 * 2 1 3 10 10 C 1.46409 * 126.27480 * 0.02562 * 9 2 1 11 11 O 1.21650 * 119.99755 * 346.73288 * 10 9 2 12 12 N 1.34775 * 120.00790 * 166.73190 * 10 9 2 13 13 C 1.33222 * 120.00574 * 174.58676 * 12 10 9 14 14 H 1.08003 * 120.00314 * 214.91013 * 13 12 10 15 15 C 1.46786 * 119.99833 * 34.91136 * 13 12 10 16 16 N 1.29317 * 119.99858 * 195.75885 * 15 13 12 17 17 Si 1.86799 * 120.00216 * 15.75757 * 15 13 12 18 18 H 1.48492 * 109.47185 * 261.69087 * 17 15 13 19 19 H 1.48498 * 109.46922 * 21.69287 * 17 15 13 20 20 H 1.48500 * 109.47316 * 141.68934 * 17 15 13 21 21 C 1.46507 * 119.99470 * 354.59106 * 12 10 9 22 22 C 1.53000 * 117.49929 * 180.21708 * 21 12 10 23 23 C 1.52992 * 117.50052 * 111.59218 * 21 12 10 24 24 H 1.08996 * 109.47559 * 267.96920 * 1 2 3 25 25 H 1.09007 * 109.46761 * 27.96880 * 1 2 3 26 26 H 1.09004 * 109.46850 * 147.96146 * 1 2 3 27 27 H 1.08000 * 125.50547 * 359.97438 * 3 2 1 28 28 H 1.07994 * 126.52244 * 179.97438 * 8 4 3 29 29 H 0.96999 * 120.00044 * 180.02562 * 16 15 13 30 30 H 1.09005 * 115.54751 * 325.92132 * 21 12 10 31 31 H 1.08999 * 117.49731 * 359.97438 * 22 21 12 32 32 H 1.08999 * 117.50160 * 145.01335 * 22 21 12 33 33 H 1.09002 * 117.49831 * 214.97585 * 23 21 12 34 34 H 1.09001 * 117.50023 * 0.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 3.5502 0.7087 -0.0060 5 7 4.7278 1.6054 -0.0137 6 8 5.9427 1.0970 -0.0186 7 8 4.5607 2.9119 -0.0147 8 6 3.5799 -0.6882 -0.0035 9 6 2.2674 -1.1192 0.0040 10 6 1.8128 -2.5109 0.0084 11 8 0.6491 -2.7699 0.2506 12 7 2.6834 -3.5052 -0.2559 13 6 2.2972 -4.7755 -0.1465 14 1 2.9942 -5.5239 0.2007 15 6 0.9243 -5.1580 -0.4980 16 7 0.4531 -6.2997 -0.1149 17 14 -0.1421 -3.9956 -1.4985 18 1 -1.0381 -3.2385 -0.5880 19 1 0.7239 -3.0465 -2.2429 20 1 -0.9599 -4.7780 -2.4600 21 6 4.0547 -3.1889 -0.6634 22 6 4.9935 -4.3615 -0.9542 23 6 5.1792 -3.5297 0.3164 24 1 -0.3634 -0.0364 1.0270 25 1 -0.3633 0.9077 -0.4820 26 1 -0.3633 -0.8712 -0.5452 27 1 1.9022 2.1189 -0.0004 28 1 4.4612 -1.3123 -0.0073 29 1 -0.4540 -6.5527 -0.3475 30 1 4.1697 -2.2896 -1.2686 31 1 4.5910 -5.3682 -0.8419 32 1 5.7263 -4.2340 -1.7510 33 1 6.0343 -2.8548 0.3555 34 1 4.8989 -3.9895 1.2640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521592617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = 89.589663 kcal Electronic energy + Delta-G solvation = -22328.998105 eV Core-core repulsion = 18848.579746 eV Total energy + Delta-G solvation = -3480.418359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.26849 -40.94127 -39.60597 -38.38993 -35.40079 -35.14311 -34.50253 -33.84633 -31.52280 -29.01469 -27.03486 -26.50872 -24.38296 -23.39256 -22.44512 -22.13560 -21.28959 -20.00373 -18.97615 -18.62064 -17.95476 -17.42829 -17.19564 -16.85440 -16.55859 -16.07609 -15.92711 -15.43995 -15.20845 -14.98109 -14.45678 -14.04759 -13.63837 -13.50346 -13.20094 -13.16541 -12.61531 -12.43887 -12.22413 -12.15209 -12.11619 -11.79824 -11.72152 -11.42681 -10.87369 -10.59262 -10.50983 -9.80460 -9.80394 -8.57317 -6.10037 -1.48088 0.05955 0.08844 1.04111 1.29002 1.35632 1.44321 1.52471 2.05031 2.47016 2.58234 2.76393 2.99425 3.29475 3.45849 3.59685 3.77999 3.88227 4.00107 4.15826 4.20248 4.25496 4.28983 4.53209 4.63319 4.79170 4.81802 5.01141 5.09998 5.21694 5.28549 5.32725 5.55872 5.70379 5.77433 6.36968 6.73285 7.05731 7.69640 8.36106 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.007344 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.876119 B = 3811.735568 C = 4965.971627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.387 5.387 3 C 0.146 3.854 4 C -0.110 4.110 5 N 0.034 4.966 6 O -0.230 6.230 7 O -0.198 6.198 8 C -0.115 4.115 9 C -0.008 4.008 10 C 0.448 3.552 11 O -0.587 6.587 12 N -0.369 5.369 13 C -0.386 4.386 14 H 0.088 0.912 15 C 0.041 3.959 16 N -0.853 5.853 17 Si 1.051 2.949 18 H -0.273 1.273 19 H -0.308 1.308 20 H -0.337 1.337 21 C 0.011 3.989 22 C -0.160 4.160 23 C -0.173 4.173 24 H 0.099 0.901 25 H 0.144 0.856 26 H 0.075 0.925 27 H 0.246 0.754 28 H 0.187 0.813 29 H 0.289 0.711 30 H 0.143 0.857 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 13.012 -1.947 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.059 5.059 3 C -0.001 4.001 4 C -0.207 4.207 5 N 0.501 4.499 6 O -0.410 6.410 7 O -0.387 6.387 8 C -0.140 4.140 9 C -0.120 4.120 10 C 0.245 3.755 11 O -0.483 6.483 12 N -0.079 5.079 13 C -0.514 4.514 14 H 0.106 0.894 15 C -0.174 4.174 16 N -0.484 5.484 17 Si 0.893 3.107 18 H -0.203 1.203 19 H -0.237 1.237 20 H -0.272 1.272 21 C -0.092 4.092 22 C -0.197 4.197 23 C -0.211 4.211 24 H 0.118 0.882 25 H 0.162 0.838 26 H 0.094 0.906 27 H 0.262 0.738 28 H 0.204 0.796 29 H 0.100 0.900 30 H 0.160 0.840 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.660 12.194 -1.783 12.342 hybrid contribution -0.126 -0.078 -0.139 0.203 sum 0.534 12.117 -1.922 12.280 Atomic orbital electron populations 1.22746 0.72153 1.06750 1.06226 1.44272 1.09204 1.03935 1.48449 1.22335 0.86817 0.94665 0.96302 1.19433 0.84435 0.89618 1.27240 1.49569 1.03300 1.02550 0.94504 1.96275 1.05443 1.79873 1.59385 1.96221 1.94361 0.91128 1.56997 1.22013 0.97267 0.91937 1.02751 1.20203 0.89249 0.88517 1.14017 1.17088 0.87352 0.83781 0.87325 1.90033 1.17850 1.82170 1.58238 1.41775 1.09610 1.04716 1.51778 1.19657 0.97401 0.84560 1.49770 0.89447 1.28043 0.98627 0.96409 0.94312 1.68749 1.17524 1.23818 1.38309 0.83446 0.77698 0.76241 0.73318 1.20327 1.23677 1.27238 1.22723 0.80019 1.01815 1.04686 1.23326 1.00400 0.95979 0.99969 1.23448 0.99341 1.03825 0.94495 0.88223 0.83796 0.90644 0.73774 0.79597 0.90027 0.84032 0.89413 0.85158 0.84936 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 10.39 127.77 1.33 2.60 16 2 N -0.39 -10.22 3.15 -534.71 -1.68 -11.91 16 3 C 0.15 3.09 11.05 83.59 0.92 4.02 16 4 C -0.11 -3.10 7.17 36.12 0.26 -2.84 16 5 N 0.03 1.08 4.98 -47.08 -0.23 0.84 16 6 O -0.23 -7.96 19.78 3.51 0.07 -7.89 16 7 O -0.20 -6.03 19.76 3.50 0.07 -5.96 16 8 C -0.12 -3.60 8.48 22.61 0.19 -3.41 16 9 C -0.01 -0.28 6.70 40.33 0.27 -0.01 16 10 C 0.45 20.11 5.88 86.37 0.51 20.62 16 11 O -0.59 -29.32 8.24 -4.19 -0.03 -29.36 16 12 N -0.37 -16.85 2.63 -613.08 -1.61 -18.47 16 13 C -0.39 -20.54 9.23 86.72 0.80 -19.74 16 14 H 0.09 4.87 6.74 -2.91 -0.02 4.85 16 15 C 0.04 2.27 5.19 87.30 0.45 2.72 16 16 N -0.85 -48.93 13.88 23.26 0.32 -48.60 16 17 Si 1.05 52.23 23.93 68.60 1.64 53.87 16 18 H -0.27 -13.66 6.24 99.48 0.62 -13.04 16 19 H -0.31 -15.09 6.78 99.48 0.67 -14.41 16 20 H -0.34 -16.41 7.11 99.48 0.71 -15.70 16 21 C 0.01 0.39 4.33 44.99 0.19 0.58 16 22 C -0.16 -4.93 9.76 30.59 0.30 -4.64 16 23 C -0.17 -5.11 9.45 30.59 0.29 -4.82 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.14 1.46 8.13 -2.38 -0.02 1.44 16 26 H 0.07 2.20 6.68 -2.39 -0.02 2.19 16 27 H 0.25 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.19 5.57 4.27 -2.91 -0.01 5.56 16 29 H 0.29 15.36 8.26 -92.71 -0.77 14.59 16 30 H 0.14 4.43 5.70 -2.38 -0.01 4.42 16 31 H 0.09 3.21 6.44 -2.39 -0.02 3.20 16 32 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.13 3.03 8.06 -2.39 -0.02 3.01 16 34 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -71.05 290.87 5.09 -65.96 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.04 Total: 6.44 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.52 Total: -4.92 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.21 Total: -78.13 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: 0.10 Total: -43.22 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 1.64 Total: 53.87 kcal Total: -71.05 5.09 -65.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521592617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.545 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds