Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00126 * 2 1 4 4 C 1.50699 * 109.47090 * 293.95397 * 3 2 1 5 5 H 1.07998 * 120.00144 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99937 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47190 * 60.00098 * 8 6 4 10 10 H 1.48497 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47062 * 300.00630 * 8 6 4 12 12 C 1.39055 * 110.99707 * 123.95248 * 2 1 3 13 13 C 1.39237 * 119.92973 * 295.76691 * 12 2 1 14 14 C 1.37594 * 120.06378 * 179.72256 * 13 12 2 15 15 C 1.39811 * 119.93092 * 0.55674 * 14 13 12 16 16 C 1.47526 * 120.06855 * 179.74305 * 15 14 13 17 17 N 1.34777 * 119.99866 * 359.97438 * 16 15 14 18 18 O 1.21596 * 119.99733 * 179.97438 * 16 15 14 19 19 C 1.39778 * 119.86266 * 359.72115 * 15 14 13 20 20 C 1.37631 * 119.93292 * 359.97438 * 19 15 14 21 21 N 1.48016 * 119.96830 * 180.02562 * 20 19 15 22 22 O 1.21796 * 119.99841 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99969 * 179.97438 * 21 20 19 24 24 H 1.09009 * 109.47037 * 296.04385 * 1 2 3 25 25 H 1.08992 * 109.47254 * 56.04810 * 1 2 3 26 26 H 1.09004 * 109.47303 * 176.04758 * 1 2 3 27 27 H 1.09003 * 109.47282 * 53.95191 * 3 2 1 28 28 H 1.09001 * 109.47321 * 173.95223 * 3 2 1 29 29 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 30 30 H 1.08000 * 119.97002 * 0.02562 * 13 12 2 31 31 H 1.08004 * 120.03188 * 180.25817 * 14 13 12 32 32 H 0.96996 * 119.99864 * 359.97438 * 17 16 15 33 33 H 0.97001 * 119.99566 * 180.02562 * 17 16 15 34 34 H 1.08004 * 120.03566 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.1059 4.2229 -3.2866 10 1 2.1151 5.5731 -3.1382 11 1 2.1757 3.4295 -4.2699 12 6 1.9673 -0.7251 1.0769 13 6 1.7265 -0.2909 2.3777 14 6 2.2133 -1.0093 3.4454 15 6 2.9604 -2.1699 3.2228 16 6 3.4886 -2.9394 4.3653 17 7 3.2517 -2.5234 5.6252 18 8 4.1378 -3.9489 4.1702 19 6 3.2052 -2.6000 1.9156 20 6 2.7102 -1.8805 0.8518 21 7 2.9686 -2.3355 -0.5327 22 8 3.6194 -3.3459 -0.7303 23 8 2.5304 -1.6994 -1.4745 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.9866 4.9179 -0.7770 30 1 1.1528 0.6080 2.5489 31 1 2.0227 -0.6743 4.4543 32 1 2.7342 -1.7180 5.7807 33 1 3.5994 -3.0292 6.3763 34 1 3.7816 -3.4964 1.7404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035084435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 5.788562 kcal Electronic energy + Delta-G solvation = -21624.759261 eV Core-core repulsion = 18140.707014 eV Total energy + Delta-G solvation = -3484.052247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68450 -40.35028 -39.02496 -36.47457 -35.71352 -34.18775 -32.74136 -31.83475 -30.31859 -27.49214 -26.28551 -25.60308 -23.63324 -22.57566 -21.49003 -20.50240 -19.03835 -18.16955 -17.61276 -16.94003 -16.86563 -16.70409 -15.96112 -15.27466 -15.08473 -14.85153 -14.56833 -14.25585 -13.91576 -13.51991 -12.88747 -12.58606 -12.18758 -12.05715 -11.52687 -11.10791 -10.91765 -10.86017 -10.73408 -10.62529 -10.43684 -10.39037 -10.14718 -10.07308 -9.66305 -9.48507 -9.01448 -8.57346 -7.78986 -6.15957 -4.17671 0.09207 0.53538 1.64092 1.87256 2.53059 3.12414 3.29946 3.34253 3.38274 3.40957 4.03742 4.38195 4.43706 4.46310 4.52242 4.81789 5.02628 5.21247 5.43188 5.51822 5.66006 5.80070 5.83059 5.94523 6.17724 6.41767 6.46217 6.83972 6.89333 6.93247 6.98657 7.57626 7.65324 7.88770 7.91030 8.25690 8.28888 8.88913 9.47111 10.95039 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.004963 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.491924 B = 5639.932477 C = 6351.062020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.508 5.508 3 C 0.202 3.798 4 C -0.508 4.508 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.900 5.900 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.216 3.784 13 C -0.162 4.162 14 C -0.031 4.031 15 C -0.164 4.164 16 C 0.572 3.428 17 N -0.850 5.850 18 O -0.535 6.535 19 C 0.006 3.994 20 C -0.045 4.045 21 N 0.026 4.974 22 O -0.215 6.215 23 O -0.071 6.071 24 H 0.022 0.978 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.002 0.998 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.402 0.598 33 H 0.407 0.593 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -8.264 12.746 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.230 5.230 3 C 0.080 3.920 4 C -0.546 4.546 5 H 0.090 0.910 6 C -0.144 4.144 7 N -0.539 5.539 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.118 3.882 13 C -0.183 4.183 14 C -0.051 4.051 15 C -0.168 4.168 16 C 0.358 3.642 17 N -0.414 5.414 18 O -0.413 6.413 19 C -0.014 4.014 20 C -0.130 4.130 21 N 0.549 4.451 22 O -0.413 6.413 23 O -0.307 6.307 24 H 0.041 0.959 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.170 0.830 31 H 0.157 0.843 32 H 0.231 0.769 33 H 0.238 0.762 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.976 -8.828 12.745 15.787 hybrid contribution -0.388 1.167 0.062 1.231 sum -3.364 -7.661 12.807 15.298 Atomic orbital electron populations 1.22304 0.85128 1.00687 1.01995 1.59990 1.08672 1.19173 1.35174 1.19909 0.95479 0.78557 0.98044 1.21026 1.35526 0.96713 1.01344 0.91033 1.24974 0.94986 0.97220 0.97222 1.69933 1.38000 1.11702 1.34277 0.86462 0.78738 0.78168 0.83537 1.20132 1.21402 1.19819 1.19254 0.88213 0.89159 0.91528 1.21940 1.02891 1.01831 0.91640 1.21494 0.91939 0.91804 0.99827 1.19617 1.05625 0.98687 0.92901 1.17902 0.79105 0.84004 0.83165 1.43687 1.58672 1.31575 1.07495 1.90862 1.39673 1.25364 1.85359 1.20940 0.92899 0.98131 0.89416 1.21132 1.09184 0.99790 0.82863 1.43277 0.99129 0.99824 1.02827 1.94493 1.40044 1.15607 1.91159 1.94703 1.49406 1.53528 1.33111 0.95903 0.88712 0.93185 0.98022 0.95147 0.92678 0.83039 0.84301 0.76870 0.76160 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.19 60.07 0.55 1.32 16 2 N -0.51 -10.22 2.57 -180.33 -0.46 -10.69 16 3 C 0.20 4.84 4.29 -4.98 -0.02 4.82 16 4 C -0.51 -13.41 8.46 -34.44 -0.29 -13.70 16 5 H 0.07 1.88 7.12 -52.49 -0.37 1.50 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.22 3.75 4.66 -83.86 -0.39 3.36 16 13 C -0.16 -2.19 8.61 -39.45 -0.34 -2.53 16 14 C -0.03 -0.32 9.53 -39.23 -0.37 -0.69 16 15 C -0.16 -2.01 5.88 -104.95 -0.62 -2.63 16 16 C 0.57 6.63 8.03 -12.47 -0.10 6.53 16 17 N -0.85 -5.68 8.82 30.46 0.27 -5.41 16 18 O -0.54 -8.31 17.17 5.28 0.09 -8.22 16 19 C 0.01 0.10 9.09 -39.23 -0.36 -0.26 16 20 C -0.05 -0.79 6.86 -79.81 -0.55 -1.34 16 21 N 0.03 0.53 4.45 34.03 0.15 0.68 16 22 O -0.21 -4.28 18.44 -29.46 -0.54 -4.82 16 23 O -0.07 -1.55 17.09 -29.46 -0.50 -2.06 16 24 H 0.02 0.35 7.33 -51.92 -0.38 -0.03 16 25 H 0.09 1.74 6.76 -51.93 -0.35 1.39 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.00 0.05 7.44 -51.93 -0.39 -0.34 16 28 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.15 1.93 7.10 -52.49 -0.37 1.55 16 31 H 0.14 0.79 6.39 -52.48 -0.34 0.46 16 32 H 0.40 1.53 6.85 -40.82 -0.28 1.25 16 33 H 0.41 2.12 8.93 -40.82 -0.36 1.75 16 34 H 0.16 2.46 7.18 -52.48 -0.38 2.08 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -32.77 302.36 -6.51 -39.28 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -3.20 Total: -0.87 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.58 Total: -3.67 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.69 Total: -40.09 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.96 Total: -15.10 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.77 -6.51 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035084435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.069 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds