Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00126 * 2 1 4 4 C 1.50699 * 109.47090 * 293.95397 * 3 2 1 5 5 H 1.07998 * 120.00144 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99937 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47190 * 60.00098 * 8 6 4 10 10 H 1.48497 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47062 * 300.00630 * 8 6 4 12 12 C 1.39055 * 110.99707 * 123.95248 * 2 1 3 13 13 C 1.39237 * 119.92973 * 295.76691 * 12 2 1 14 14 C 1.37594 * 120.06378 * 179.72256 * 13 12 2 15 15 C 1.39811 * 119.93092 * 0.55674 * 14 13 12 16 16 C 1.47526 * 120.06855 * 179.74305 * 15 14 13 17 17 N 1.34777 * 119.99866 * 359.97438 * 16 15 14 18 18 O 1.21596 * 119.99733 * 179.97438 * 16 15 14 19 19 C 1.39778 * 119.86266 * 359.72115 * 15 14 13 20 20 C 1.37631 * 119.93292 * 359.97438 * 19 15 14 21 21 N 1.48016 * 119.96830 * 180.02562 * 20 19 15 22 22 O 1.21796 * 119.99841 * 359.97438 * 21 20 19 23 23 O 1.21800 * 119.99969 * 179.97438 * 21 20 19 24 24 H 1.09009 * 109.47037 * 296.04385 * 1 2 3 25 25 H 1.08992 * 109.47254 * 56.04810 * 1 2 3 26 26 H 1.09004 * 109.47303 * 176.04758 * 1 2 3 27 27 H 1.09003 * 109.47282 * 53.95191 * 3 2 1 28 28 H 1.09001 * 109.47321 * 173.95223 * 3 2 1 29 29 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 30 30 H 1.08000 * 119.97002 * 0.02562 * 13 12 2 31 31 H 1.08004 * 120.03188 * 180.25817 * 14 13 12 32 32 H 0.96996 * 119.99864 * 359.97438 * 17 16 15 33 33 H 0.97001 * 119.99566 * 180.02562 * 17 16 15 34 34 H 1.08004 * 120.03566 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.1059 4.2229 -3.2866 10 1 2.1151 5.5731 -3.1382 11 1 2.1757 3.4295 -4.2699 12 6 1.9673 -0.7251 1.0769 13 6 1.7265 -0.2909 2.3777 14 6 2.2133 -1.0093 3.4454 15 6 2.9604 -2.1699 3.2228 16 6 3.4886 -2.9394 4.3653 17 7 3.2517 -2.5234 5.6252 18 8 4.1378 -3.9489 4.1702 19 6 3.2052 -2.6000 1.9156 20 6 2.7102 -1.8805 0.8518 21 7 2.9686 -2.3355 -0.5327 22 8 3.6194 -3.3459 -0.7303 23 8 2.5304 -1.6994 -1.4745 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.9866 4.9179 -0.7770 30 1 1.1528 0.6080 2.5489 31 1 2.0227 -0.6743 4.4543 32 1 2.7342 -1.7180 5.7807 33 1 3.5994 -3.0292 6.3763 34 1 3.7816 -3.4964 1.7404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035084435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -17.655089 kcal Electronic energy + Delta-G solvation = -21625.775854 eV Core-core repulsion = 18140.707014 eV Total energy + Delta-G solvation = -3485.068840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.14814 -41.49062 -40.19201 -37.85850 -37.26092 -35.08846 -34.67773 -32.98849 -31.58737 -29.30914 -27.69890 -26.97309 -25.20337 -23.73817 -22.94965 -21.78513 -20.17537 -19.56325 -18.63060 -18.58598 -18.42770 -17.83804 -17.46730 -16.69230 -16.43965 -16.02524 -15.66306 -15.51959 -15.36127 -14.86832 -14.29304 -13.90103 -13.82139 -13.30826 -13.04407 -12.86681 -12.60813 -12.51464 -12.44957 -12.16024 -12.06184 -12.05908 -11.44476 -11.43329 -10.85205 -10.76040 -10.61732 -10.22577 -9.31589 -8.22112 -6.29936 -1.21778 -0.62062 0.28369 0.49528 1.43958 1.46960 1.47761 1.54933 2.27600 2.35090 2.41227 2.74693 3.12785 3.35888 3.56753 3.59846 3.67622 3.76051 4.26450 4.39485 4.50264 4.55906 4.66826 4.76875 4.93448 5.02016 5.11765 5.17630 5.38357 5.65740 5.78624 5.98283 6.02572 6.28227 6.48867 6.67940 6.82502 7.16464 7.38921 8.88625 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.004963 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.491924 B = 5639.932477 C = 6351.062020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.525 5.525 3 C 0.223 3.777 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.010 3.990 7 N -0.931 5.931 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.187 3.813 13 C -0.159 4.159 14 C 0.006 3.994 15 C -0.152 4.152 16 C 0.574 3.426 17 N -0.819 5.819 18 O -0.579 6.579 19 C 0.001 3.999 20 C -0.063 4.063 21 N 0.030 4.970 22 O -0.207 6.207 23 O -0.132 6.132 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.065 0.935 27 H -0.002 1.002 28 H -0.007 1.007 29 H 0.265 0.735 30 H 0.166 0.834 31 H 0.201 0.799 32 H 0.420 0.580 33 H 0.419 0.581 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 -8.035 15.624 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.247 5.247 3 C 0.100 3.900 4 C -0.559 4.559 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.572 5.572 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.090 3.910 13 C -0.180 4.180 14 C -0.013 4.013 15 C -0.157 4.157 16 C 0.359 3.641 17 N -0.384 5.384 18 O -0.460 6.460 19 C -0.020 4.020 20 C -0.148 4.148 21 N 0.547 4.453 22 O -0.412 6.412 23 O -0.355 6.355 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.183 0.817 31 H 0.218 0.782 32 H 0.253 0.747 33 H 0.253 0.747 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.027 -8.526 15.608 18.235 hybrid contribution -0.041 0.965 -0.595 1.134 sum -4.068 -7.561 15.013 17.295 Atomic orbital electron populations 1.22293 0.83653 1.01582 1.02271 1.59626 1.10168 1.17018 1.37862 1.19436 0.93113 0.80751 0.96733 1.21350 1.35176 0.97101 1.02313 0.91654 1.25759 0.94902 0.97925 1.00302 1.70031 1.39097 1.12004 1.36019 0.85509 0.79110 0.77034 0.79439 1.18714 1.20912 1.20200 1.19363 0.89733 0.89441 0.92453 1.22093 1.02919 1.02424 0.90525 1.22022 0.88253 0.89296 1.01694 1.19837 1.04777 0.99013 0.92026 1.17773 0.78813 0.83353 0.84156 1.43454 1.57216 1.31773 1.05986 1.90864 1.41819 1.27293 1.86033 1.21011 0.92953 0.97895 0.90139 1.21242 1.11104 1.01101 0.81313 1.43681 0.98351 0.99340 1.03977 1.94440 1.39364 1.15610 1.91767 1.94700 1.51693 1.54471 1.34681 0.93683 0.90562 0.91604 0.98418 0.98920 0.92611 0.81695 0.78214 0.74673 0.74714 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.62 9.19 127.69 1.17 2.80 16 2 N -0.52 -21.58 2.57 -724.44 -1.86 -23.44 16 3 C 0.22 10.98 4.29 85.56 0.37 11.35 16 4 C -0.52 -28.27 8.46 25.60 0.22 -28.05 16 5 H 0.07 3.54 7.12 -2.91 -0.02 3.52 16 6 C 0.01 0.53 5.46 84.66 0.46 0.99 16 7 N -0.93 -53.30 13.29 21.45 0.28 -53.01 16 8 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.19 6.44 4.66 38.47 0.18 6.62 16 13 C -0.16 -3.85 8.61 22.36 0.19 -3.65 16 14 C 0.01 0.10 9.53 22.50 0.21 0.31 16 15 C -0.15 -3.25 5.88 -20.08 -0.12 -3.37 16 16 C 0.57 11.30 8.03 86.69 0.70 11.99 16 17 N -0.82 -6.80 8.82 -175.81 -1.55 -8.35 16 18 O -0.58 -16.89 17.17 -4.02 -0.07 -16.96 16 19 C 0.00 0.02 9.09 22.50 0.20 0.22 16 20 C -0.06 -2.22 6.86 36.46 0.25 -1.97 16 21 N 0.03 1.26 4.45 -46.26 -0.21 1.06 16 22 O -0.21 -8.57 18.44 18.89 0.35 -8.22 16 23 O -0.13 -6.17 17.09 18.89 0.32 -5.85 16 24 H 0.04 1.31 7.33 -2.38 -0.02 1.30 16 25 H 0.08 2.86 6.76 -2.39 -0.02 2.84 16 26 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.00 -0.09 7.44 -2.39 -0.02 -0.11 16 28 H -0.01 -0.41 8.06 -2.39 -0.02 -0.43 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.17 3.62 7.10 -2.91 -0.02 3.60 16 31 H 0.20 0.72 6.39 -2.91 -0.02 0.70 16 32 H 0.42 0.43 6.85 -92.71 -0.63 -0.20 16 33 H 0.42 2.39 8.93 -92.71 -0.83 1.57 16 34 H 0.16 4.75 7.18 -2.91 -0.02 4.73 16 Total: -1.00 -75.88 302.36 2.85 -73.03 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -0.28 Total: -0.81 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 3.84 Total: -2.76 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.33 Total: -83.74 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: 0.60 Total: -31.03 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.88 2.85 -73.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035084435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.376 kcal (2) G-P(sol) polarization free energy of solvation -75.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds