Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.28452 * 125.06389 * 2 1 4 4 C 1.32007 * 110.51603 * 180.19631 * 3 2 1 5 5 C 1.47637 * 126.27561 * 179.88130 * 4 3 2 6 6 O 1.21484 * 119.99859 * 179.68898 * 5 4 3 7 7 O 1.34720 * 119.99457 * 359.68462 * 5 4 3 8 8 C 1.40933 * 107.45731 * 359.61349 * 4 3 2 9 9 C 1.36805 * 125.06389 * 179.77213 * 2 1 3 10 10 C 1.47077 * 126.64815 * 359.94160 * 9 2 1 11 11 O 1.21666 * 120.00239 * 5.05765 * 10 9 2 12 12 N 1.34776 * 119.99771 * 185.04939 * 10 9 2 13 13 C 1.36843 * 119.99835 * 183.17349 * 12 10 9 14 14 H 1.08001 * 120.00494 * 342.96554 * 13 12 10 15 15 C 1.39056 * 120.00032 * 162.97054 * 13 12 10 16 16 N 1.31364 * 119.99607 * 340.75646 * 15 13 12 17 17 Si 1.86796 * 120.00284 * 160.75760 * 15 13 12 18 18 H 1.48506 * 109.46795 * 59.99847 * 17 15 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46986 * 300.00331 * 17 15 13 21 21 C 1.46504 * 120.00211 * 3.18337 * 12 10 9 22 22 C 1.52995 * 117.50026 * 135.06446 * 21 12 10 23 23 C 1.53000 * 117.49905 * 66.40290 * 21 12 10 24 24 H 1.09007 * 109.47388 * 264.48737 * 1 2 3 25 25 H 1.09001 * 109.47523 * 24.48491 * 1 2 3 26 26 H 1.09003 * 109.47550 * 144.48523 * 1 2 3 27 27 H 0.96707 * 116.99387 * 180.02562 * 7 5 4 28 28 H 1.07999 * 127.27541 * 180.20771 * 8 4 3 29 29 H 0.96998 * 119.99988 * 185.12694 * 16 15 13 30 30 H 1.09003 * 115.54832 * 280.73539 * 21 12 10 31 31 H 1.09001 * 117.50350 * 359.97438 * 22 21 12 32 32 H 1.08994 * 117.50051 * 145.02424 * 22 21 12 33 33 H 1.09006 * 117.49465 * 214.98768 * 23 21 12 34 34 H 1.08998 * 117.49874 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0514 0.0000 4 6 3.4806 0.7198 -0.0042 5 6 4.6251 1.6525 -0.0081 6 8 5.7605 1.2206 -0.0061 7 8 4.4101 2.9824 -0.0138 8 6 3.5521 -0.6877 0.0019 9 6 2.2508 -1.1198 0.0045 10 6 1.7893 -2.5162 0.0112 11 8 0.6018 -2.7650 -0.0796 12 7 2.6819 -3.5204 0.1178 13 6 2.2593 -4.8206 0.0588 14 1 1.2153 -5.0563 0.2035 15 6 3.1741 -5.8385 -0.1874 16 7 4.3380 -5.5589 -0.7284 17 14 2.7480 -7.6035 0.2513 18 1 1.5361 -8.0212 -0.4986 19 1 3.8828 -8.4910 -0.1090 20 1 2.4859 -7.7016 1.7097 21 6 4.1046 -3.2200 0.2970 22 6 4.8678 -4.0201 1.3544 23 6 4.5256 -2.5495 1.6062 24 1 -0.3634 -0.0987 1.0230 25 1 -0.3634 0.9352 -0.4259 26 1 -0.3634 -0.8365 -0.5970 27 1 5.1907 3.5532 -0.0166 28 1 4.4436 -1.2973 0.0037 29 1 4.9459 -6.2755 -0.9686 30 1 4.6435 -2.9396 -0.6081 31 1 4.3115 -4.7697 1.9171 32 1 5.9089 -4.2657 1.1453 33 1 5.3417 -1.8282 1.5625 34 1 3.7440 -2.3315 2.3340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601000024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 13.703282 kcal Electronic energy + Delta-G solvation = -22252.539928 eV Core-core repulsion = 18768.830889 eV Total energy + Delta-G solvation = -3483.709039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27487 -39.68483 -38.78400 -36.38093 -35.92088 -33.23806 -33.07225 -31.53446 -30.40495 -27.57295 -25.47498 -23.93140 -22.55276 -21.92742 -21.31725 -20.24433 -19.33795 -17.64468 -17.28960 -16.67600 -16.14683 -15.87426 -15.48625 -15.25949 -15.07195 -14.32400 -13.99876 -13.54403 -13.30700 -13.15620 -12.90166 -12.47781 -12.13852 -12.00750 -11.46979 -11.44756 -11.24997 -10.79785 -10.67980 -10.60806 -10.57498 -10.50270 -10.07050 -9.32699 -9.03647 -8.91862 -8.66071 -8.53914 -7.97252 -6.54723 -3.98772 1.53306 1.96907 2.59743 3.09835 3.15017 3.16786 3.26537 3.39177 3.94014 4.07509 4.49264 4.64377 4.71006 4.99287 5.26736 5.35494 5.46924 5.63457 5.72015 5.81847 5.89100 5.94002 6.08649 6.14531 6.31071 6.51550 6.67465 6.71526 6.87540 6.96582 7.03915 7.39110 7.81624 7.95711 8.20013 8.30224 8.93891 9.16370 9.72793 10.48164 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.006051 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.652086 B = 4626.573475 C = 5574.637237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.252 5.252 3 N -0.235 5.235 4 C -0.031 4.031 5 C 0.579 3.421 6 O -0.510 6.510 7 O -0.505 6.505 8 C -0.157 4.157 9 C 0.007 3.993 10 C 0.494 3.506 11 O -0.594 6.594 12 N -0.381 5.381 13 C -0.315 4.315 14 H 0.109 0.891 15 C 0.044 3.956 16 N -0.846 5.846 17 Si 0.925 3.075 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.112 3.888 22 C -0.126 4.126 23 C -0.219 4.219 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.410 0.590 28 H 0.190 0.810 29 H 0.274 0.726 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 8.942 2.311 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.043 5.043 3 N -0.075 5.075 4 C -0.185 4.185 5 C 0.421 3.579 6 O -0.396 6.396 7 O -0.316 6.316 8 C -0.185 4.185 9 C -0.118 4.118 10 C 0.283 3.717 11 O -0.482 6.482 12 N -0.096 5.096 13 C -0.442 4.442 14 H 0.126 0.874 15 C -0.164 4.164 16 N -0.482 5.482 17 Si 0.751 3.249 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.196 1.196 21 C 0.007 3.993 22 C -0.164 4.164 23 C -0.257 4.257 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.268 0.732 28 H 0.206 0.794 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.408 9.217 2.256 9.498 hybrid contribution 0.972 -1.096 0.091 1.468 sum 0.564 8.121 2.347 8.472 Atomic orbital electron populations 1.22352 0.72247 1.05453 1.05027 1.45717 1.08040 1.01950 1.48629 1.73529 1.02836 1.13733 1.17422 1.20438 0.89586 0.92486 1.16012 1.19305 0.86654 0.80341 0.71597 1.90901 1.23242 1.78612 1.46843 1.84665 1.43083 1.18053 1.85755 1.22908 0.98232 0.92124 1.05198 1.21633 0.90008 0.90861 1.09317 1.16385 0.86288 0.81826 0.87159 1.90598 1.15539 1.83604 1.58458 1.42869 1.04073 1.05125 1.57488 1.19673 0.96267 0.79721 1.48563 0.87362 1.25327 0.95140 1.00464 0.95511 1.69949 1.09036 1.34046 1.35124 0.86004 0.78316 0.81071 0.79510 1.19579 1.20681 1.19599 1.21295 0.83450 1.02604 0.91958 1.22870 1.00140 0.92346 1.00997 1.23769 1.03595 0.97318 1.01010 0.89834 0.89251 0.86646 0.73244 0.79354 0.91525 0.87013 0.89168 0.89296 0.88581 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.69 59.84 0.64 1.94 16 2 N -0.25 -4.64 3.75 -64.20 -0.24 -4.88 16 3 N -0.23 -4.26 11.97 33.32 0.40 -3.86 16 4 C -0.03 -0.56 7.13 -82.94 -0.59 -1.15 16 5 C 0.58 9.31 8.34 34.57 0.29 9.60 16 6 O -0.51 -9.00 17.70 -19.25 -0.34 -9.34 16 7 O -0.51 -6.29 13.44 -40.55 -0.54 -6.84 16 8 C -0.16 -3.03 7.96 -38.97 -0.31 -3.34 16 9 C 0.01 0.15 6.69 -82.47 -0.55 -0.40 16 10 C 0.49 11.84 7.54 -12.68 -0.10 11.75 16 11 O -0.59 -15.26 14.38 5.22 0.08 -15.19 16 12 N -0.38 -9.29 2.93 -109.06 -0.32 -9.61 16 13 C -0.31 -8.14 9.06 -15.01 -0.14 -8.28 16 14 H 0.11 2.93 7.34 -52.49 -0.39 2.55 16 15 C 0.04 1.05 4.09 -17.45 -0.07 0.98 16 16 N -0.85 -20.50 10.27 55.50 0.57 -19.93 16 17 Si 0.93 19.14 29.60 -169.99 -5.03 14.11 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C 0.11 2.40 2.33 -67.93 -0.16 2.24 16 22 C -0.13 -2.50 7.88 -26.70 -0.21 -2.71 16 23 C -0.22 -4.03 7.49 -26.69 -0.20 -4.23 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.12 1.85 6.51 -51.93 -0.34 1.51 16 27 H 0.41 2.76 9.11 45.56 0.42 3.18 16 28 H 0.19 3.59 3.44 -52.49 -0.18 3.41 16 29 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 30 H 0.11 2.46 7.34 -51.93 -0.38 2.07 16 31 H 0.09 1.92 7.42 -51.93 -0.39 1.54 16 32 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.10 1.60 7.56 -51.93 -0.39 1.20 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -30.43 294.17 -4.87 -35.30 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -2.47 Total: 9.41 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.40 Total: 6.40 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.41 Total: -38.29 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.81 Total: -31.36 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.43 -4.87 -35.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601000024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.001 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds