Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.28452 * 125.06389 * 2 1 4 4 C 1.32007 * 110.51603 * 180.19631 * 3 2 1 5 5 C 1.47637 * 126.27561 * 179.88130 * 4 3 2 6 6 O 1.21484 * 119.99859 * 179.68898 * 5 4 3 7 7 O 1.34720 * 119.99457 * 359.68462 * 5 4 3 8 8 C 1.40933 * 107.45731 * 359.61349 * 4 3 2 9 9 C 1.36805 * 125.06389 * 179.77213 * 2 1 3 10 10 C 1.47077 * 126.64815 * 359.94160 * 9 2 1 11 11 O 1.21666 * 120.00239 * 5.05765 * 10 9 2 12 12 N 1.34776 * 119.99771 * 185.04939 * 10 9 2 13 13 C 1.36843 * 119.99835 * 183.17349 * 12 10 9 14 14 H 1.08001 * 120.00494 * 342.96554 * 13 12 10 15 15 C 1.39056 * 120.00032 * 162.97054 * 13 12 10 16 16 N 1.31364 * 119.99607 * 340.75646 * 15 13 12 17 17 Si 1.86796 * 120.00284 * 160.75760 * 15 13 12 18 18 H 1.48506 * 109.46795 * 59.99847 * 17 15 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46986 * 300.00331 * 17 15 13 21 21 C 1.46504 * 120.00211 * 3.18337 * 12 10 9 22 22 C 1.52995 * 117.50026 * 135.06446 * 21 12 10 23 23 C 1.53000 * 117.49905 * 66.40290 * 21 12 10 24 24 H 1.09007 * 109.47388 * 264.48737 * 1 2 3 25 25 H 1.09001 * 109.47523 * 24.48491 * 1 2 3 26 26 H 1.09003 * 109.47550 * 144.48523 * 1 2 3 27 27 H 0.96707 * 116.99387 * 180.02562 * 7 5 4 28 28 H 1.07999 * 127.27541 * 180.20771 * 8 4 3 29 29 H 0.96998 * 119.99988 * 185.12694 * 16 15 13 30 30 H 1.09003 * 115.54832 * 280.73539 * 21 12 10 31 31 H 1.09001 * 117.50350 * 359.97438 * 22 21 12 32 32 H 1.08994 * 117.50051 * 145.02424 * 22 21 12 33 33 H 1.09006 * 117.49465 * 214.98768 * 23 21 12 34 34 H 1.08998 * 117.49874 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0514 0.0000 4 6 3.4806 0.7198 -0.0042 5 6 4.6251 1.6525 -0.0081 6 8 5.7605 1.2206 -0.0061 7 8 4.4101 2.9824 -0.0138 8 6 3.5521 -0.6877 0.0019 9 6 2.2508 -1.1198 0.0045 10 6 1.7893 -2.5162 0.0112 11 8 0.6018 -2.7650 -0.0796 12 7 2.6819 -3.5204 0.1178 13 6 2.2593 -4.8206 0.0588 14 1 1.2153 -5.0563 0.2035 15 6 3.1741 -5.8385 -0.1874 16 7 4.3380 -5.5589 -0.7284 17 14 2.7480 -7.6035 0.2513 18 1 1.5361 -8.0212 -0.4986 19 1 3.8828 -8.4910 -0.1090 20 1 2.4859 -7.7016 1.7097 21 6 4.1046 -3.2200 0.2970 22 6 4.8678 -4.0201 1.3544 23 6 4.5256 -2.5495 1.6062 24 1 -0.3634 -0.0987 1.0230 25 1 -0.3634 0.9352 -0.4259 26 1 -0.3634 -0.8365 -0.5970 27 1 5.1907 3.5532 -0.0166 28 1 4.4436 -1.2973 0.0037 29 1 4.9459 -6.2755 -0.9686 30 1 4.6435 -2.9396 -0.6081 31 1 4.3115 -4.7697 1.9171 32 1 5.9089 -4.2657 1.1453 33 1 5.3417 -1.8282 1.5625 34 1 3.7440 -2.3315 2.3340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601000024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -7.366317 kcal Electronic energy + Delta-G solvation = -22253.453575 eV Core-core repulsion = 18768.830889 eV Total energy + Delta-G solvation = -3484.622686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.75088 -40.91255 -40.50819 -38.13974 -37.06703 -35.03026 -34.45978 -33.33300 -32.00466 -28.86329 -27.31226 -25.29867 -24.17287 -23.45162 -22.99297 -21.71064 -20.75019 -19.11799 -18.85002 -18.28106 -17.56339 -17.23627 -17.22429 -16.86203 -16.38119 -15.98478 -15.71097 -15.14378 -14.94630 -14.45491 -14.35807 -13.89289 -13.71102 -13.33225 -13.20609 -12.95676 -12.57430 -12.45959 -12.30489 -12.15580 -12.13319 -11.95474 -11.77880 -10.98082 -10.76466 -10.45589 -10.36976 -10.10559 -9.81089 -8.38903 -5.93064 0.14980 0.42146 1.24647 1.43292 1.46121 1.54062 2.01390 2.02396 2.25899 2.31528 2.81576 2.99309 3.18917 3.32296 3.63802 4.12617 4.19479 4.25711 4.31145 4.33840 4.38146 4.52653 4.64543 4.72333 4.81224 5.10908 5.20100 5.27808 5.39794 5.43747 5.47231 5.58046 5.95702 6.37330 6.67217 7.03197 7.06309 7.31828 7.88074 8.62662 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.006051 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.652086 B = 4626.573475 C = 5574.637237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.249 5.249 3 N -0.222 5.222 4 C -0.039 4.039 5 C 0.589 3.411 6 O -0.527 6.527 7 O -0.494 6.494 8 C -0.149 4.149 9 C -0.016 4.016 10 C 0.487 3.513 11 O -0.624 6.624 12 N -0.392 5.392 13 C -0.353 4.353 14 H 0.083 0.917 15 C 0.021 3.979 16 N -0.857 5.857 17 Si 0.983 3.017 18 H -0.276 1.276 19 H -0.269 1.269 20 H -0.269 1.269 21 C 0.093 3.907 22 C -0.123 4.123 23 C -0.186 4.186 24 H 0.097 0.903 25 H 0.125 0.875 26 H 0.097 0.903 27 H 0.437 0.563 28 H 0.191 0.809 29 H 0.280 0.720 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 10.224 2.760 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.041 5.041 3 N -0.063 5.063 4 C -0.194 4.194 5 C 0.432 3.568 6 O -0.416 6.416 7 O -0.308 6.308 8 C -0.177 4.177 9 C -0.142 4.142 10 C 0.277 3.723 11 O -0.514 6.514 12 N -0.107 5.107 13 C -0.481 4.481 14 H 0.101 0.899 15 C -0.186 4.186 16 N -0.491 5.491 17 Si 0.806 3.194 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.194 1.194 21 C -0.011 4.011 22 C -0.161 4.161 23 C -0.224 4.224 24 H 0.115 0.885 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.299 0.701 28 H 0.208 0.792 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.621 10.537 2.704 10.896 hybrid contribution 0.636 -1.350 -0.083 1.494 sum 1.257 9.188 2.621 9.637 Atomic orbital electron populations 1.22588 0.70408 1.06629 1.05924 1.46046 1.09137 1.01229 1.47710 1.73534 1.02890 1.13249 1.16660 1.20738 0.90285 0.92569 1.15760 1.18900 0.85459 0.81222 0.71268 1.90902 1.23605 1.79241 1.47804 1.84593 1.44860 1.16515 1.84806 1.22926 0.97687 0.92958 1.04157 1.21236 0.91130 0.90038 1.11774 1.16842 0.86011 0.83139 0.86349 1.90556 1.16736 1.84526 1.59545 1.43005 1.05286 1.04800 1.57589 1.19591 0.95794 0.81269 1.51401 0.89918 1.25918 0.94873 1.03207 0.94595 1.70004 1.09322 1.35172 1.34636 0.85158 0.78129 0.77030 0.79099 1.20105 1.19297 1.19358 1.21320 0.82153 1.04907 0.92754 1.22830 1.00298 0.92843 1.00100 1.23712 1.03437 0.96851 0.98390 0.88488 0.85651 0.88451 0.70062 0.79229 0.90998 0.87849 0.90903 0.87893 0.86040 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.69 127.77 1.37 3.71 16 2 N -0.25 -8.93 3.75 -357.03 -1.34 -10.26 16 3 N -0.22 -7.61 11.97 -48.50 -0.58 -8.19 16 4 C -0.04 -1.36 7.13 42.26 0.30 -1.06 16 5 C 0.59 17.37 8.34 70.30 0.59 17.96 16 6 O -0.53 -17.32 17.70 19.89 0.35 -16.96 16 7 O -0.49 -10.56 13.44 -56.30 -0.76 -11.32 16 8 C -0.15 -5.65 7.96 22.67 0.18 -5.47 16 9 C -0.02 -0.68 6.69 40.42 0.27 -0.41 16 10 C 0.49 24.01 7.54 86.56 0.65 24.66 16 11 O -0.62 -33.35 14.38 -4.24 -0.06 -33.41 16 12 N -0.39 -19.69 2.93 -617.19 -1.81 -21.50 16 13 C -0.35 -18.92 9.06 84.11 0.76 -18.16 16 14 H 0.08 4.73 7.34 -2.91 -0.02 4.71 16 15 C 0.02 1.04 4.09 84.96 0.35 1.39 16 16 N -0.86 -41.47 10.27 21.68 0.22 -41.25 16 17 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 18 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 C 0.09 4.01 2.33 44.99 0.10 4.12 16 22 C -0.12 -4.82 7.88 30.62 0.24 -4.58 16 23 C -0.19 -6.65 7.49 30.62 0.23 -6.42 16 24 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.10 3.16 6.51 -2.39 -0.02 3.14 16 27 H 0.44 4.16 9.11 -74.05 -0.67 3.49 16 28 H 0.19 7.05 3.44 -2.91 -0.01 7.04 16 29 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 30 H 0.10 4.58 7.34 -2.39 -0.02 4.56 16 31 H 0.07 3.11 7.42 -2.39 -0.02 3.10 16 32 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 33 H 0.12 3.74 7.56 -2.38 -0.02 3.72 16 34 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -65.87 294.17 3.60 -62.28 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.50 Total: 23.47 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.04 Total: 15.74 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.51 Total: -81.21 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -0.47 Total: -61.69 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -65.87 3.60 -62.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601000024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.910 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds