Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35859 * 126.17308 * 2 1 4 4 N 1.30179 * 109.11837 * 180.02562 * 3 2 1 5 5 C 1.35807 * 109.01904 * 359.97438 * 4 3 2 6 6 C 1.46745 * 126.24595 * 180.02562 * 5 4 3 7 7 C 1.35322 * 119.99849 * 7.19662 * 6 5 4 8 8 C 1.41560 * 120.00706 * 29.95348 * 7 6 5 9 9 O 1.21815 * 119.99408 * 8.21576 * 8 7 6 10 10 N 1.34770 * 120.00203 * 187.94501 * 8 7 6 11 11 C 1.36800 * 119.99949 * 180.27492 * 10 8 7 12 12 H 1.08002 * 120.00071 * 324.29937 * 11 10 8 13 13 C 1.39047 * 120.00144 * 144.30170 * 11 10 8 14 14 N 1.31371 * 120.00353 * 162.81242 * 13 11 10 15 15 Si 1.86807 * 119.99948 * 342.80997 * 13 11 10 16 16 H 1.48504 * 109.46889 * 95.40361 * 15 13 11 17 17 H 1.48499 * 109.46938 * 215.40529 * 15 13 11 18 18 H 1.48502 * 109.46765 * 335.40624 * 15 13 11 19 19 C 1.46501 * 120.00082 * 0.27271 * 10 8 7 20 20 C 1.50695 * 109.47177 * 83.73546 * 19 10 8 21 21 O 1.20826 * 119.99874 * 0.02562 * 20 19 10 22 22 O 1.34228 * 120.00016 * 180.02562 * 20 19 10 23 23 C 1.36066 * 126.17990 * 180.33989 * 2 1 3 24 24 H 1.08996 * 109.47307 * 89.97713 * 1 2 3 25 25 H 1.09010 * 109.46642 * 209.97904 * 1 2 3 26 26 H 1.09004 * 109.47370 * 329.97437 * 1 2 3 27 27 H 1.08000 * 125.44061 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.99283 * 187.18851 * 6 5 4 29 29 H 1.08000 * 119.99573 * 209.95205 * 7 6 5 30 30 H 0.96994 * 120.00488 * 179.97438 * 14 13 11 31 31 H 1.08995 * 109.47026 * 203.74029 * 19 10 8 32 32 H 1.09007 * 109.47079 * 323.73589 * 19 10 8 33 33 H 0.96703 * 116.99924 * 180.02562 * 22 20 19 34 34 H 1.08000 * 126.64426 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0967 0.0000 4 7 3.5114 0.7149 -0.0006 5 6 3.5580 -0.6424 -0.0004 6 6 4.7705 -1.4689 -0.0003 7 6 5.9845 -0.8893 0.1464 8 6 6.1131 0.3042 0.8968 9 8 5.1652 0.7284 1.5335 10 7 7.2859 0.9680 0.9112 11 6 7.4118 2.1183 1.6409 12 1 6.5787 2.8010 1.7209 13 6 8.6123 2.4086 2.2795 14 7 8.8599 3.6324 2.6881 15 14 9.8732 1.0584 2.5566 16 1 10.8715 1.0803 1.4574 17 1 10.5603 1.2816 3.8540 18 1 9.1899 -0.2599 2.5786 19 6 8.4259 0.4578 0.1454 20 6 8.3168 0.9188 -1.2851 21 8 7.3829 1.6037 -1.6296 22 8 9.2572 0.5686 -2.1766 23 6 2.2682 -1.0983 -0.0065 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8903 0.5136 26 1 -0.3634 0.8898 0.5142 27 1 1.9262 2.1216 -0.0004 28 1 4.6939 -2.5399 -0.1172 29 1 6.8553 -1.3372 -0.3091 30 1 9.6972 3.8348 3.1339 31 1 9.3524 0.8343 0.5789 32 1 8.4264 -0.6318 0.1770 33 1 9.1444 0.8885 -3.0822 34 1 1.9493 -2.1301 -0.0130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608134805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 16.490091 kcal Electronic energy + Delta-G solvation = -21926.724780 eV Core-core repulsion = 18443.136586 eV Total energy + Delta-G solvation = -3483.588194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44070 -39.82342 -38.35166 -35.60348 -34.85791 -33.82777 -32.30390 -31.81349 -28.96332 -27.87513 -26.81228 -25.25161 -22.56898 -21.58306 -20.75022 -20.06625 -17.82170 -17.59927 -17.12362 -16.83725 -16.36583 -15.88532 -15.39740 -15.16156 -14.75952 -14.20118 -13.95035 -13.42792 -13.19968 -12.87364 -12.73983 -12.68389 -12.63663 -12.34510 -12.29807 -11.92371 -11.39983 -10.97259 -10.85361 -10.42183 -9.95087 -9.79964 -9.64531 -9.30114 -9.06827 -8.73002 -8.22554 -7.65220 -7.32796 -6.30437 -3.82463 1.39555 2.60463 2.85159 3.03827 3.04121 3.24131 3.25962 3.48380 4.01932 4.15976 4.53317 4.68647 4.72327 4.97954 5.03356 5.08648 5.21576 5.25879 5.44393 5.54650 5.60302 5.76792 5.82305 6.01243 6.14226 6.48533 6.69813 6.85098 7.02338 7.18767 7.54423 7.66406 8.45036 8.50219 8.64812 8.66902 9.12769 9.41709 10.00289 10.82120 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.005799 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.182358 B = 4827.429466 C = 5346.596126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.473 5.473 3 C 0.168 3.832 4 N -0.405 5.405 5 C 0.027 3.973 6 C -0.021 4.021 7 C -0.195 4.195 8 C 0.512 3.488 9 O -0.518 6.518 10 N -0.454 5.454 11 C -0.290 4.290 12 H 0.110 0.890 13 C 0.048 3.952 14 N -0.865 5.865 15 Si 0.867 3.133 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.259 1.259 19 C 0.100 3.900 20 C 0.451 3.549 21 O -0.484 6.484 22 O -0.529 6.529 23 C -0.044 4.044 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.199 0.801 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.273 0.727 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.398 0.602 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 -11.781 -8.010 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.158 5.158 3 C -0.115 4.115 4 N -0.120 5.120 5 C -0.100 4.100 6 C -0.043 4.043 7 C -0.218 4.218 8 C 0.304 3.696 9 O -0.396 6.396 10 N -0.177 5.177 11 C -0.418 4.418 12 H 0.128 0.872 13 C -0.156 4.156 14 N -0.502 5.502 15 Si 0.695 3.305 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.183 1.183 19 C -0.026 4.026 20 C 0.289 3.711 21 O -0.368 6.368 22 O -0.341 6.341 23 C -0.178 4.178 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.215 0.785 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.256 0.744 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.077 -10.783 -7.227 15.840 hybrid contribution 0.137 -0.786 -0.467 0.924 sum -8.940 -11.569 -7.694 16.522 Atomic orbital electron populations 1.21936 0.77503 1.04252 1.02930 1.45441 1.07103 1.07174 1.56110 1.25307 0.85697 0.93098 1.07429 1.71123 1.17090 1.10540 1.13232 1.19539 0.91442 0.90461 1.08564 1.21243 0.89847 0.96483 0.96716 1.22272 0.97762 1.00380 1.01413 1.16801 0.83576 0.84148 0.85069 1.90737 1.36332 1.67479 1.45089 1.43430 1.09489 1.24186 1.40619 1.19146 1.01292 0.96245 1.25097 0.87226 1.25459 0.97680 0.96125 0.96363 1.69690 1.24856 1.17776 1.37908 0.87097 0.81464 0.83907 0.78012 1.19933 1.21033 1.18289 1.21606 0.95094 1.00459 0.85454 1.24770 0.79327 0.77930 0.89040 1.90739 1.32521 1.34140 1.79407 1.84587 1.52243 1.73346 1.23946 1.22661 0.91062 0.92202 1.11919 0.91078 0.90199 0.89706 0.78468 0.85234 0.86602 0.91620 0.87703 0.87768 0.74393 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.16 59.85 0.67 1.27 16 2 N -0.47 -6.46 3.15 -125.46 -0.39 -6.86 16 3 C 0.17 2.90 12.55 -89.89 -1.13 1.77 16 4 N -0.40 -9.01 7.98 -11.10 -0.09 -9.10 16 5 C 0.03 0.52 6.06 -83.19 -0.50 0.02 16 6 C -0.02 -0.37 10.00 -37.19 -0.37 -0.74 16 7 C -0.20 -3.95 8.90 -39.36 -0.35 -4.30 16 8 C 0.51 13.11 6.65 -15.00 -0.10 13.01 16 9 O -0.52 -14.95 12.88 5.09 0.07 -14.88 16 10 N -0.45 -11.87 1.80 -119.36 -0.21 -12.08 16 11 C -0.29 -8.68 9.45 -15.03 -0.14 -8.82 16 12 H 0.11 3.75 7.87 -52.49 -0.41 3.33 16 13 C 0.05 1.38 5.37 -17.45 -0.09 1.29 16 14 N -0.87 -25.85 13.95 55.50 0.77 -25.08 16 15 Si 0.87 20.37 24.65 -169.99 -4.19 16.18 16 16 H -0.27 -5.91 6.75 56.52 0.38 -5.53 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.26 -5.80 6.99 56.52 0.39 -5.41 16 19 C 0.10 2.16 4.10 -5.20 -0.02 2.14 16 20 C 0.45 9.32 8.16 36.00 0.29 9.62 16 21 O -0.48 -11.88 17.04 -18.75 -0.32 -12.20 16 22 O -0.53 -8.34 13.42 -39.25 -0.53 -8.87 16 23 C -0.04 -0.64 11.53 -16.20 -0.19 -0.83 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.20 2.79 8.06 -52.49 -0.42 2.37 16 28 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.12 1.94 6.14 -52.49 -0.32 1.62 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.11 2.33 2.95 -51.93 -0.15 2.17 16 32 H 0.10 1.82 6.34 -51.92 -0.33 1.49 16 33 H 0.40 4.41 9.10 45.56 0.41 4.82 16 34 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -40.59 298.95 -4.83 -45.42 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.50 Total: 8.53 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -1.94 Total: 14.43 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.08 Total: -53.12 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.78 Total: -35.95 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.19 Total: 16.18 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -40.59 -4.83 -45.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608134805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.908 kcal (2) G-P(sol) polarization free energy of solvation -40.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds