Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35859 * 126.17308 * 2 1 4 4 N 1.30179 * 109.11837 * 180.02562 * 3 2 1 5 5 C 1.35807 * 109.01904 * 359.97438 * 4 3 2 6 6 C 1.46745 * 126.24595 * 180.02562 * 5 4 3 7 7 C 1.35322 * 119.99849 * 7.19662 * 6 5 4 8 8 C 1.41560 * 120.00706 * 29.95348 * 7 6 5 9 9 O 1.21815 * 119.99408 * 8.21576 * 8 7 6 10 10 N 1.34770 * 120.00203 * 187.94501 * 8 7 6 11 11 C 1.36800 * 119.99949 * 180.27492 * 10 8 7 12 12 H 1.08002 * 120.00071 * 324.29937 * 11 10 8 13 13 C 1.39047 * 120.00144 * 144.30170 * 11 10 8 14 14 N 1.31371 * 120.00353 * 162.81242 * 13 11 10 15 15 Si 1.86807 * 119.99948 * 342.80997 * 13 11 10 16 16 H 1.48504 * 109.46889 * 95.40361 * 15 13 11 17 17 H 1.48499 * 109.46938 * 215.40529 * 15 13 11 18 18 H 1.48502 * 109.46765 * 335.40624 * 15 13 11 19 19 C 1.46501 * 120.00082 * 0.27271 * 10 8 7 20 20 C 1.50695 * 109.47177 * 83.73546 * 19 10 8 21 21 O 1.20826 * 119.99874 * 0.02562 * 20 19 10 22 22 O 1.34228 * 120.00016 * 180.02562 * 20 19 10 23 23 C 1.36066 * 126.17990 * 180.33989 * 2 1 3 24 24 H 1.08996 * 109.47307 * 89.97713 * 1 2 3 25 25 H 1.09010 * 109.46642 * 209.97904 * 1 2 3 26 26 H 1.09004 * 109.47370 * 329.97437 * 1 2 3 27 27 H 1.08000 * 125.44061 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.99283 * 187.18851 * 6 5 4 29 29 H 1.08000 * 119.99573 * 209.95205 * 7 6 5 30 30 H 0.96994 * 120.00488 * 179.97438 * 14 13 11 31 31 H 1.08995 * 109.47026 * 203.74029 * 19 10 8 32 32 H 1.09007 * 109.47079 * 323.73589 * 19 10 8 33 33 H 0.96703 * 116.99924 * 180.02562 * 22 20 19 34 34 H 1.08000 * 126.64426 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0967 0.0000 4 7 3.5114 0.7149 -0.0006 5 6 3.5580 -0.6424 -0.0004 6 6 4.7705 -1.4689 -0.0003 7 6 5.9845 -0.8893 0.1464 8 6 6.1131 0.3042 0.8968 9 8 5.1652 0.7284 1.5335 10 7 7.2859 0.9680 0.9112 11 6 7.4118 2.1183 1.6409 12 1 6.5787 2.8010 1.7209 13 6 8.6123 2.4086 2.2795 14 7 8.8599 3.6324 2.6881 15 14 9.8732 1.0584 2.5566 16 1 10.8715 1.0803 1.4574 17 1 10.5603 1.2816 3.8540 18 1 9.1899 -0.2599 2.5786 19 6 8.4259 0.4578 0.1454 20 6 8.3168 0.9188 -1.2851 21 8 7.3829 1.6037 -1.6296 22 8 9.2572 0.5686 -2.1766 23 6 2.2682 -1.0983 -0.0065 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8903 0.5136 26 1 -0.3634 0.8898 0.5142 27 1 1.9262 2.1216 -0.0004 28 1 4.6939 -2.5399 -0.1172 29 1 6.8553 -1.3372 -0.3091 30 1 9.6972 3.8348 3.1339 31 1 9.3524 0.8343 0.5789 32 1 8.4264 -0.6318 0.1770 33 1 9.1444 0.8885 -3.0822 34 1 1.9493 -2.1301 -0.0130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608134805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = -15.464070 kcal Electronic energy + Delta-G solvation = -21928.110417 eV Core-core repulsion = 18443.136586 eV Total energy + Delta-G solvation = -3484.973831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.67297 -41.48424 -40.09201 -37.17663 -36.60064 -35.17326 -34.18812 -33.40989 -30.27670 -29.62885 -27.98139 -26.91459 -24.17103 -23.17628 -21.94052 -21.59290 -19.37366 -19.15518 -19.02837 -18.46567 -17.83918 -17.44513 -16.78162 -16.49543 -16.39293 -15.63956 -15.45791 -15.04064 -14.70033 -14.49482 -14.27797 -14.05992 -13.82184 -13.75667 -13.62402 -13.39505 -12.96283 -12.71780 -12.52646 -12.23220 -11.86757 -11.57316 -11.04804 -10.87842 -10.59491 -10.35263 -9.95692 -9.64581 -8.66098 -8.45254 -6.06938 0.04150 1.18894 1.22590 1.34346 1.39519 1.49253 1.97741 2.05029 2.19981 2.54699 2.76209 2.92759 3.29592 3.78939 3.91430 3.95967 4.07483 4.12093 4.26249 4.36549 4.47867 4.49550 4.63286 4.73350 4.77760 5.23605 5.37143 5.46327 5.65589 5.68533 5.96974 6.12644 6.39461 6.65309 7.04443 7.07868 7.35839 7.40715 8.09710 8.73527 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.005799 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.182358 B = 4827.429466 C = 5346.596126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.463 5.463 3 C 0.145 3.855 4 N -0.479 5.479 5 C -0.047 4.047 6 C 0.026 3.974 7 C -0.252 4.252 8 C 0.509 3.491 9 O -0.571 6.571 10 N -0.473 5.473 11 C -0.314 4.314 12 H 0.031 0.969 13 C -0.006 4.006 14 N -0.922 5.922 15 Si 0.946 3.054 16 H -0.233 1.233 17 H -0.283 1.283 18 H -0.237 1.237 19 C 0.094 3.906 20 C 0.463 3.537 21 O -0.535 6.535 22 O -0.505 6.505 23 C 0.003 3.997 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.210 0.790 28 H 0.192 0.808 29 H 0.152 0.848 30 H 0.279 0.721 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.424 0.576 34 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -16.651 -9.500 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.145 5.145 3 C -0.138 4.138 4 N -0.195 5.195 5 C -0.173 4.173 6 C 0.005 3.995 7 C -0.274 4.274 8 C 0.304 3.696 9 O -0.452 6.452 10 N -0.197 5.197 11 C -0.443 4.443 12 H 0.049 0.951 13 C -0.206 4.206 14 N -0.561 5.561 15 Si 0.768 3.232 16 H -0.159 1.159 17 H -0.210 1.210 18 H -0.160 1.160 19 C -0.031 4.031 20 C 0.304 3.696 21 O -0.423 6.423 22 O -0.318 6.318 23 C -0.135 4.135 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.226 0.774 28 H 0.209 0.791 29 H 0.169 0.831 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.172 0.828 33 H 0.285 0.715 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.326 -15.664 -8.778 20.233 hybrid contribution -0.174 0.718 -0.135 0.751 sum -9.500 -14.946 -8.913 19.826 Atomic orbital electron populations 1.22375 0.73637 1.06234 1.04999 1.45783 1.09316 1.05895 1.53537 1.25492 0.85579 0.94711 1.08045 1.70989 1.20080 1.13327 1.15084 1.20204 0.94200 0.89982 1.12912 1.22129 0.88428 0.98915 0.90010 1.22163 1.00568 0.98971 1.05715 1.17729 0.82430 0.84916 0.84539 1.90685 1.37966 1.69292 1.47283 1.43382 1.11251 1.23283 1.41737 1.18551 0.99955 0.97332 1.28427 0.95132 1.26395 1.00144 0.99047 0.95032 1.69849 1.26319 1.20527 1.39383 0.85879 0.78390 0.80146 0.78819 1.15861 1.21023 1.16007 1.21771 0.92910 1.03071 0.85317 1.24462 0.78981 0.76710 0.89483 1.90745 1.34832 1.36458 1.80303 1.84488 1.49801 1.72401 1.25117 1.23444 0.89476 0.94254 1.06329 0.88879 0.87430 0.88676 0.77375 0.79103 0.83062 0.91117 0.87983 0.82829 0.71513 0.75690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 11.16 127.77 1.43 2.23 16 2 N -0.46 -11.53 3.15 -550.84 -1.73 -13.26 16 3 C 0.15 5.17 12.55 180.09 2.26 7.43 16 4 N -0.48 -22.22 7.98 -189.02 -1.51 -23.73 16 5 C -0.05 -1.74 6.06 40.41 0.25 -1.50 16 6 C 0.03 0.84 10.00 23.82 0.24 1.08 16 7 C -0.25 -9.87 8.90 22.42 0.20 -9.67 16 8 C 0.51 27.11 6.65 85.06 0.57 27.67 16 9 O -0.57 -35.31 12.88 -4.72 -0.06 -35.37 16 10 N -0.47 -25.67 1.80 -649.72 -1.17 -26.84 16 11 C -0.31 -20.36 9.45 84.11 0.79 -19.57 16 12 H 0.03 2.38 7.87 -2.91 -0.02 2.36 16 13 C -0.01 -0.38 5.37 84.96 0.46 0.08 16 14 N -0.92 -58.69 13.95 21.68 0.30 -58.39 16 15 Si 0.95 42.14 24.65 68.60 1.69 43.83 16 16 H -0.23 -8.95 6.75 99.48 0.67 -8.28 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.24 -9.68 6.99 99.48 0.70 -8.99 16 19 C 0.09 3.94 4.10 85.63 0.35 4.29 16 20 C 0.46 18.70 8.16 71.23 0.58 19.28 16 21 O -0.53 -27.05 17.04 21.96 0.37 -26.67 16 22 O -0.50 -14.29 13.42 -51.40 -0.69 -14.98 16 23 C 0.00 0.06 11.53 83.70 0.97 1.03 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.21 6.35 8.06 -2.91 -0.02 6.33 16 28 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.15 4.59 6.14 -2.91 -0.02 4.57 16 30 H 0.28 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.10 4.29 2.95 -2.39 -0.01 4.28 16 32 H 0.15 4.78 6.34 -2.38 -0.02 4.77 16 33 H 0.42 8.03 9.10 -74.06 -0.67 7.36 16 34 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -103.81 298.95 5.73 -98.08 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.44 Total: 24.99 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 8.08 Total: 32.35 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -4.11 Total: -122.22 kcal Atomic # 8 Polarization: -76.65 SS G_CDS: -0.38 Total: -77.02 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.69 Total: 43.83 kcal Total: -103.81 5.73 -98.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608134805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.612 kcal (2) G-P(sol) polarization free energy of solvation -103.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds