Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00024 * 2 1 4 4 C 1.50694 * 109.47337 * 270.00220 * 3 2 1 5 5 H 1.08002 * 120.00267 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00325 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99854 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00152 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46912 * 60.00318 * 8 6 4 10 10 H 1.48494 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47045 * 300.00365 * 8 6 4 12 12 C 1.34772 * 119.99993 * 180.02562 * 2 1 3 13 13 O 1.21589 * 120.00118 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00099 * 359.97438 * 12 2 1 15 15 C 1.39954 * 119.99993 * 184.58703 * 14 12 2 16 16 C 1.38865 * 120.06719 * 324.90955 * 15 14 12 17 17 C 1.38114 * 119.92535 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.07391 * 0.02759 * 17 16 15 19 19 N 1.48012 * 119.93224 * 179.97438 * 18 17 16 20 20 O 1.21799 * 119.99975 * 359.97438 * 19 18 17 21 21 O 1.21804 * 120.00071 * 179.72730 * 19 18 17 22 22 C 1.38279 * 120.13609 * 0.24870 * 18 17 16 23 23 C 1.38119 * 120.07244 * 359.45358 * 22 18 17 24 24 H 1.08999 * 109.47076 * 269.99907 * 1 2 3 25 25 H 1.08999 * 109.47378 * 29.99598 * 1 2 3 26 26 H 1.09004 * 109.46853 * 150.00165 * 1 2 3 27 27 H 1.09006 * 109.47282 * 30.00008 * 3 2 1 28 28 H 1.09001 * 109.47059 * 150.00178 * 3 2 1 29 29 H 0.96996 * 120.00206 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00189 * 4.59497 * 14 12 2 31 31 H 1.07997 * 120.04055 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.96241 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.96703 * 179.70863 * 22 18 17 34 34 H 1.07997 * 120.04047 * 180.25772 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.1405 3.5938 -4.1346 10 1 4.1803 4.7030 -3.4338 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1615 -3.5445 0.0959 16 6 3.4055 -3.6810 -0.5058 17 6 4.0901 -4.8767 -0.4093 18 6 3.5376 -5.9374 0.2850 19 7 4.2737 -7.2175 0.3860 20 8 5.3646 -7.3361 -0.1425 21 8 3.7905 -8.1510 1.0015 22 6 2.2965 -5.8063 0.8804 23 6 1.6096 -4.6113 0.7928 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1383 0.5138 29 1 4.0301 4.4440 -0.8503 30 1 0.4973 -2.3358 -0.0674 31 1 3.8374 -2.8533 -1.0486 32 1 5.0578 -4.9835 -0.8766 33 1 1.8655 -6.6380 1.4180 34 1 0.6421 -4.5081 1.2615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035186274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 6.874076 kcal Electronic energy + Delta-G solvation = -20886.358163 eV Core-core repulsion = 17402.352987 eV Total energy + Delta-G solvation = -3484.005176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14406 -40.67104 -38.82652 -36.53622 -35.38058 -34.84056 -32.73905 -31.49898 -30.68091 -27.99223 -26.53879 -25.63569 -23.56581 -23.23284 -22.00955 -19.90996 -19.35727 -18.66387 -18.22339 -17.49841 -17.23927 -16.70060 -15.57228 -15.27273 -14.94078 -14.75589 -14.31552 -13.93908 -13.66530 -13.35903 -13.22621 -12.82854 -12.33237 -12.12304 -11.81489 -11.55225 -11.35207 -11.19643 -11.13758 -11.05754 -10.71353 -10.70138 -10.28821 -9.86141 -9.68290 -9.42403 -8.66048 -8.55751 -7.91520 -6.17314 -4.23325 -0.16146 0.87765 1.33033 1.44893 2.71048 3.11380 3.23384 3.29024 3.31240 3.58410 4.10104 4.30054 4.35567 4.40802 4.72531 4.80374 5.09175 5.17273 5.25489 5.39155 5.52935 5.62504 5.70225 5.85576 5.95686 6.11328 6.34306 6.46064 6.63306 7.09973 7.23906 7.38175 7.67001 7.78096 8.05939 8.22502 8.73179 8.88642 9.42425 10.90657 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027619 B = 0.003655 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.567187 B = 7658.769141 C = 8327.884763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.605 5.605 3 C 0.259 3.741 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.695 3.305 13 O -0.561 6.561 14 N -0.693 5.693 15 C 0.239 3.761 16 C -0.124 4.124 17 C -0.031 4.031 18 C -0.078 4.078 19 N 0.037 4.963 20 O -0.170 6.170 21 O -0.175 6.175 22 C -0.032 4.032 23 C -0.159 4.159 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.266 0.734 30 H 0.409 0.591 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 -14.157 2.426 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.140 3.860 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.397 3.603 13 O -0.437 6.437 14 N -0.342 5.342 15 C 0.139 3.861 16 C -0.145 4.145 17 C -0.051 4.051 18 C -0.163 4.163 19 N 0.553 4.447 20 O -0.385 6.385 21 O -0.389 6.389 22 C -0.052 4.052 23 C -0.181 4.181 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.618 -13.168 2.436 15.407 hybrid contribution -0.231 0.119 -0.950 0.985 sum -7.849 -13.049 1.487 15.300 Atomic orbital electron populations 1.21661 0.81291 1.02658 1.00747 1.47574 1.06006 1.06199 1.74182 1.19333 0.92431 0.76500 0.97763 1.21368 1.37239 1.06527 0.92123 0.92462 1.24928 0.95147 0.96270 0.97582 1.69907 1.37938 1.14364 1.30908 0.86533 0.78410 0.77942 0.84393 1.20219 1.21062 1.20124 1.15948 0.85614 0.80006 0.78776 1.90919 1.11161 1.85251 1.56362 1.43231 1.10627 1.03597 1.76721 1.17974 0.92284 0.85057 0.90761 1.21568 0.94866 0.97590 1.00522 1.20977 1.00292 0.90030 0.93847 1.21032 0.96724 0.85642 1.12894 1.43601 1.00545 1.02518 0.97992 1.94532 1.07251 1.89115 1.47563 1.94501 1.71263 1.32013 1.41074 1.20711 0.91021 0.98310 0.95164 1.20867 1.02766 0.92246 1.02242 0.93251 0.89860 0.93110 0.94474 0.93509 0.92459 0.75303 0.81404 0.82834 0.82933 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.24 59.85 0.61 1.67 16 2 N -0.61 -11.43 2.86 -188.74 -0.54 -11.97 16 3 C 0.26 6.27 5.16 -5.20 -0.03 6.24 16 4 C -0.53 -14.23 9.39 -34.44 -0.32 -14.56 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.69 12.90 8.12 -86.92 -0.71 12.19 16 13 O -0.56 -12.73 13.36 5.29 0.07 -12.66 16 14 N -0.69 -9.04 5.22 -14.22 -0.07 -9.11 16 15 C 0.24 2.98 6.30 -83.69 -0.53 2.45 16 16 C -0.12 -1.73 8.70 -39.39 -0.34 -2.07 16 17 C -0.03 -0.40 9.55 -39.61 -0.38 -0.78 16 18 C -0.08 -0.98 6.85 -79.92 -0.55 -1.53 16 19 N 0.04 0.53 4.45 33.98 0.15 0.68 16 20 O -0.17 -2.58 18.44 -29.46 -0.54 -3.12 16 21 O -0.18 -2.52 18.44 -29.46 -0.54 -3.06 16 22 C -0.03 -0.33 9.55 -39.61 -0.38 -0.70 16 23 C -0.16 -1.50 9.97 -39.39 -0.39 -1.90 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 26 H 0.05 0.49 6.30 -51.93 -0.33 0.16 16 27 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.41 3.84 6.52 -40.82 -0.27 3.58 16 31 H 0.17 2.73 6.22 -52.49 -0.33 2.41 16 32 H 0.15 1.77 7.60 -52.49 -0.40 1.37 16 33 H 0.15 1.23 7.60 -52.49 -0.40 0.83 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -32.17 306.33 -7.59 -39.75 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.33 Total: 0.98 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -3.11 Total: 2.66 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.27 Total: -45.08 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.02 Total: -18.84 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.17 -7.59 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035186274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.626 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds