Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00024 * 2 1 4 4 C 1.50694 * 109.47337 * 270.00220 * 3 2 1 5 5 H 1.08002 * 120.00267 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00325 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99854 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00152 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46912 * 60.00318 * 8 6 4 10 10 H 1.48494 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47045 * 300.00365 * 8 6 4 12 12 C 1.34772 * 119.99993 * 180.02562 * 2 1 3 13 13 O 1.21589 * 120.00118 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00099 * 359.97438 * 12 2 1 15 15 C 1.39954 * 119.99993 * 184.58703 * 14 12 2 16 16 C 1.38865 * 120.06719 * 324.90955 * 15 14 12 17 17 C 1.38114 * 119.92535 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.07391 * 0.02759 * 17 16 15 19 19 N 1.48012 * 119.93224 * 179.97438 * 18 17 16 20 20 O 1.21799 * 119.99975 * 359.97438 * 19 18 17 21 21 O 1.21804 * 120.00071 * 179.72730 * 19 18 17 22 22 C 1.38279 * 120.13609 * 0.24870 * 18 17 16 23 23 C 1.38119 * 120.07244 * 359.45358 * 22 18 17 24 24 H 1.08999 * 109.47076 * 269.99907 * 1 2 3 25 25 H 1.08999 * 109.47378 * 29.99598 * 1 2 3 26 26 H 1.09004 * 109.46853 * 150.00165 * 1 2 3 27 27 H 1.09006 * 109.47282 * 30.00008 * 3 2 1 28 28 H 1.09001 * 109.47059 * 150.00178 * 3 2 1 29 29 H 0.96996 * 120.00206 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00189 * 4.59497 * 14 12 2 31 31 H 1.07997 * 120.04055 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.96241 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.96703 * 179.70863 * 22 18 17 34 34 H 1.07997 * 120.04047 * 180.25772 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.1405 3.5938 -4.1346 10 1 4.1803 4.7030 -3.4338 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1615 -3.5445 0.0959 16 6 3.4055 -3.6810 -0.5058 17 6 4.0901 -4.8767 -0.4093 18 6 3.5376 -5.9374 0.2850 19 7 4.2737 -7.2175 0.3860 20 8 5.3646 -7.3361 -0.1425 21 8 3.7905 -8.1510 1.0015 22 6 2.2965 -5.8063 0.8804 23 6 1.6096 -4.6113 0.7928 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1383 0.5138 29 1 4.0301 4.4440 -0.8503 30 1 0.4973 -2.3358 -0.0674 31 1 3.8374 -2.8533 -1.0486 32 1 5.0578 -4.9835 -0.8766 33 1 1.8655 -6.6380 1.4180 34 1 0.6421 -4.5081 1.2615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035186274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -13.252045 kcal Electronic energy + Delta-G solvation = -20887.230897 eV Core-core repulsion = 17402.352987 eV Total energy + Delta-G solvation = -3484.877910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.22238 -41.90095 -39.99036 -37.64471 -36.85987 -36.15582 -34.69108 -32.42536 -31.82862 -29.71303 -27.71241 -26.97019 -25.08532 -24.37063 -23.20157 -21.23166 -20.37905 -19.79497 -19.41509 -18.69403 -18.58324 -18.49234 -16.93392 -16.80467 -16.24347 -15.85697 -15.76220 -15.01061 -14.86165 -14.52253 -14.41707 -14.14871 -13.86540 -13.51746 -13.17381 -12.83960 -12.80242 -12.65673 -12.55315 -12.30200 -12.27748 -12.19667 -11.88648 -11.73808 -11.16069 -10.64941 -10.39562 -9.84505 -9.38679 -8.23689 -6.38301 -1.22116 -0.01620 0.26582 0.41654 1.37139 1.40619 1.45892 1.50873 1.93912 2.34720 2.41793 2.89086 3.07138 3.41739 3.52563 3.78822 3.85304 4.20551 4.31432 4.41948 4.62733 4.68783 4.75720 4.81782 4.94885 5.01986 5.06585 5.19578 5.25004 5.49161 5.58508 5.70938 5.93087 6.02777 6.53764 6.70330 6.89325 7.27848 7.46773 8.82816 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027619 B = 0.003655 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.567187 B = 7658.769141 C = 8327.884763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.274 3.726 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.964 3.036 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.692 3.308 13 O -0.613 6.613 14 N -0.669 5.669 15 C 0.225 3.775 16 C -0.143 4.143 17 C -0.035 4.035 18 C -0.086 4.086 19 N 0.038 4.962 20 O -0.210 6.210 21 O -0.160 6.160 22 C -0.020 4.020 23 C -0.130 4.130 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.002 0.998 29 H 0.267 0.733 30 H 0.430 0.570 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.184 0.816 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 -15.602 2.560 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.348 5.348 3 C 0.153 3.847 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.184 1.184 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.394 3.606 13 O -0.492 6.492 14 N -0.320 5.320 15 C 0.127 3.873 16 C -0.164 4.164 17 C -0.055 4.055 18 C -0.171 4.171 19 N 0.551 4.449 20 O -0.415 6.415 21 O -0.379 6.379 22 C -0.040 4.040 23 C -0.151 4.151 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.020 0.980 29 H 0.076 0.924 30 H 0.272 0.728 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.202 0.798 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.511 -14.648 2.528 18.205 hybrid contribution 0.586 0.479 -0.910 1.184 sum -9.925 -14.169 1.618 17.375 Atomic orbital electron populations 1.21988 0.77472 1.04276 1.03091 1.47390 1.08259 1.04699 1.74405 1.18744 0.91078 0.78865 0.96016 1.21689 1.37008 1.06508 0.93153 0.92698 1.25797 0.94937 0.96485 1.01660 1.70024 1.38787 1.14832 1.33004 0.85521 0.78821 0.77310 0.79479 1.18441 1.20579 1.20493 1.16099 0.85098 0.81149 0.78295 1.90897 1.13726 1.86248 1.58377 1.42750 1.11357 1.01998 1.75900 1.18184 0.91987 0.85563 0.91614 1.21321 0.96234 0.97104 1.01768 1.20891 1.00401 0.89974 0.94253 1.21208 0.97613 0.84638 1.13632 1.43822 1.00471 1.02975 0.97667 1.94545 1.08232 1.89625 1.49109 1.94469 1.70864 1.32410 1.40202 1.21138 0.89575 0.99365 0.93903 1.21241 1.03799 0.90121 0.99906 0.90466 0.90771 0.89042 0.95019 0.98014 0.92369 0.72786 0.84636 0.83016 0.79847 0.78807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 10.24 127.77 1.31 3.04 16 2 N -0.61 -22.97 2.86 -869.32 -2.48 -25.45 16 3 C 0.27 13.74 5.16 85.63 0.44 14.18 16 4 C -0.54 -29.64 9.39 25.60 0.24 -29.40 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.59 5.46 84.66 0.46 1.05 16 7 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 8 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.69 25.59 8.12 179.06 1.45 27.04 16 13 O -0.61 -29.05 13.36 -4.00 -0.05 -29.10 16 14 N -0.67 -15.87 5.22 -317.17 -1.65 -17.53 16 15 C 0.23 5.13 6.30 38.14 0.24 5.37 16 16 C -0.14 -4.02 8.70 22.39 0.19 -3.83 16 17 C -0.04 -0.90 9.55 22.25 0.21 -0.69 16 18 C -0.09 -2.01 6.85 36.40 0.25 -1.76 16 19 N 0.04 1.02 4.45 -46.42 -0.21 0.82 16 20 O -0.21 -6.43 18.44 18.89 0.35 -6.08 16 21 O -0.16 -4.25 18.44 18.88 0.35 -3.90 16 22 C -0.02 -0.33 9.55 22.25 0.21 -0.11 16 23 C -0.13 -1.84 9.97 22.39 0.22 -1.62 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 26 H 0.09 1.38 6.30 -2.39 -0.02 1.36 16 27 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 28 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 29 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.43 6.24 6.52 -92.71 -0.60 5.64 16 31 H 0.14 4.77 6.22 -2.91 -0.02 4.75 16 32 H 0.15 3.77 7.60 -2.91 -0.02 3.74 16 33 H 0.18 1.93 7.60 -2.91 -0.02 1.91 16 34 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -74.33 306.33 4.40 -69.93 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.55 Total: 6.59 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 5.24 Total: 13.27 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -4.06 Total: -95.97 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: 0.64 Total: -39.08 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.33 4.40 -69.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035186274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.682 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds