Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37098 * 120.00438 * 2 1 4 4 H 1.07997 * 120.00218 * 140.56979 * 3 2 1 5 5 C 1.38950 * 119.99536 * 320.57092 * 3 2 1 6 6 N 1.31410 * 119.99614 * 161.92394 * 5 3 2 7 7 Si 1.86800 * 120.00484 * 341.92054 * 5 3 2 8 8 H 1.48502 * 109.46888 * 92.80106 * 7 5 3 9 9 H 1.48494 * 109.47436 * 212.80432 * 7 5 3 10 10 H 1.48504 * 109.46789 * 332.80478 * 7 5 3 11 11 C 1.34779 * 119.99895 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00177 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99738 * 359.97438 * 11 2 1 14 14 N 1.46502 * 109.47125 * 180.02562 * 13 11 2 15 15 C 1.39673 * 120.00089 * 179.97438 * 14 13 11 16 16 C 1.38932 * 120.07543 * 3.95622 * 15 14 13 17 17 C 1.38079 * 119.92444 * 180.02562 * 16 15 14 18 18 C 1.38317 * 120.07730 * 359.71824 * 17 16 15 19 19 C 1.38263 * 120.14553 * 0.55713 * 18 17 16 20 20 C 1.38129 * 120.07231 * 359.44642 * 19 18 17 21 21 N 1.48006 * 120.03217 * 180.29844 * 20 19 18 22 22 O 1.21792 * 120.00458 * 35.27634 * 21 20 19 23 23 O 1.21803 * 119.99509 * 215.27565 * 21 20 19 24 24 H 1.09003 * 109.47178 * 264.37827 * 1 2 3 25 25 H 1.09006 * 109.47282 * 24.37357 * 1 2 3 26 26 H 1.09000 * 109.47478 * 144.37562 * 1 2 3 27 27 H 0.97003 * 120.00004 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47262 * 60.00242 * 13 11 2 29 29 H 1.08998 * 109.47386 * 300.00064 * 13 11 2 30 30 H 0.97002 * 119.99589 * 0.02562 * 14 13 11 31 31 H 1.08002 * 120.03532 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.96359 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.92610 * 180.27718 * 18 17 16 34 34 H 1.07991 * 119.95996 * 179.72120 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0462 1.2937 0.5940 5 6 1.6930 2.2536 -0.7643 6 7 2.1128 3.4725 -0.5094 7 14 0.4812 1.9547 -2.1542 8 1 -0.9045 2.1230 -1.6475 9 1 0.7306 2.9292 -3.2466 10 1 0.6542 0.5741 -2.6733 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3852 -2.4723 -0.0005 14 7 2.3372 -3.5859 -0.0005 15 6 1.8715 -4.9027 0.0000 16 6 0.5086 -5.1593 -0.0824 17 6 0.0517 -6.4623 -0.0811 18 6 0.9495 -7.5116 -0.0037 19 6 2.3061 -7.2597 0.0841 20 6 2.7699 -5.9586 0.0834 21 7 4.2228 -5.6901 0.1708 22 8 5.0145 -6.4405 -0.3709 23 8 4.6267 -4.7186 0.7846 24 1 -0.3634 -0.1007 1.0227 25 1 -0.3634 0.9361 -0.4241 26 1 -0.3634 -0.8353 -0.5986 27 1 1.7936 4.2170 -1.0432 28 1 0.7583 -2.5298 -0.8903 29 1 0.7589 -2.5302 0.8897 30 1 3.2909 -3.4086 -0.0001 31 1 -0.1927 -4.3405 -0.1466 32 1 -1.0077 -6.6625 -0.1447 33 1 0.5897 -8.5299 -0.0074 34 1 3.0041 -8.0812 0.1489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072072177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = 13.850692 kcal Electronic energy + Delta-G solvation = -21406.381691 eV Core-core repulsion = 17922.679044 eV Total energy + Delta-G solvation = -3483.702647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.07329 -39.81210 -38.86769 -36.52574 -35.66293 -34.81357 -32.26466 -32.02352 -30.32493 -27.60194 -26.58703 -26.15734 -24.52586 -22.57663 -22.08300 -19.51043 -18.99627 -18.51702 -17.82189 -17.29898 -17.18399 -16.18201 -15.99718 -15.55108 -15.22360 -15.06345 -14.36899 -14.26568 -13.94102 -13.26462 -13.03495 -12.79953 -12.61000 -12.45678 -12.05872 -11.85988 -11.78579 -11.42876 -10.97761 -10.95505 -10.89800 -10.54565 -10.48295 -10.06905 -9.70480 -9.25085 -8.81855 -7.93496 -7.91166 -6.50838 -4.14639 0.09097 1.04242 1.27373 1.57255 2.89741 3.01457 3.09676 3.13210 3.23576 3.44455 4.00573 4.19892 4.23777 4.49171 4.77524 4.79522 4.82530 4.93221 5.16667 5.28608 5.34193 5.37925 5.56315 5.61092 5.75569 5.91443 6.00696 6.10098 6.18278 6.45886 6.80784 7.38784 7.47241 7.78584 8.11327 8.30913 8.76890 9.13320 9.50332 10.60602 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.004546 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.659280 B = 6157.256347 C = 6913.592648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.461 5.461 3 C -0.320 4.320 4 H 0.108 0.892 5 C 0.061 3.939 6 N -0.861 5.861 7 Si 0.885 3.115 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.266 1.266 11 C 0.452 3.548 12 O -0.552 6.552 13 C 0.096 3.904 14 N -0.702 5.702 15 C 0.287 3.713 16 C -0.204 4.204 17 C -0.023 4.023 18 C -0.186 4.186 19 C -0.012 4.012 20 C -0.128 4.128 21 N 0.037 4.963 22 O -0.165 6.165 23 O -0.169 6.169 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.276 0.724 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.425 0.575 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -19.007 -0.010 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.183 5.183 3 C -0.447 4.447 4 H 0.126 0.874 5 C -0.146 4.146 6 N -0.496 5.496 7 Si 0.713 3.287 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.191 1.191 11 C 0.239 3.761 12 O -0.433 6.433 13 C -0.031 4.031 14 N -0.332 5.332 15 C 0.172 3.828 16 C -0.227 4.227 17 C -0.042 4.042 18 C -0.207 4.207 19 C -0.032 4.032 20 C -0.217 4.217 21 N 0.553 4.447 22 O -0.381 6.381 23 O -0.380 6.380 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.270 0.730 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.210 -18.609 -0.073 21.226 hybrid contribution -0.075 0.238 -0.751 0.791 sum -10.286 -18.371 -0.824 21.071 Atomic orbital electron populations 1.22129 0.83215 1.02069 1.01334 1.43580 1.04139 1.05399 1.65200 1.19087 1.11977 0.85657 1.27933 0.87450 1.25413 0.97513 0.94818 0.96863 1.69706 1.43249 0.98562 1.38120 0.86869 0.80259 0.79026 0.82558 1.20026 1.21252 1.19053 1.20004 0.88373 0.84517 0.83229 1.90618 1.13433 1.86106 1.53137 1.21386 0.92292 0.86620 1.02831 1.45313 1.11980 1.00985 1.74932 1.17560 0.92334 0.83780 0.89102 1.20782 0.92007 0.98599 1.11294 1.21271 1.00419 0.91602 0.90902 1.20846 0.91326 1.00076 1.08452 1.20689 0.97040 0.93195 0.92251 1.20461 0.78981 0.95583 1.26695 1.43517 1.03336 0.99829 0.98010 1.94495 1.52306 1.45190 1.46074 1.94563 1.83092 1.19506 1.40792 0.92463 0.91037 0.92753 0.91334 0.89497 0.89262 0.73039 0.83823 0.84374 0.84340 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.69 59.84 0.52 1.50 16 2 N -0.46 -10.58 2.56 -122.19 -0.31 -10.89 16 3 C -0.32 -8.82 9.36 -14.93 -0.14 -8.96 16 4 H 0.11 3.37 7.95 -52.49 -0.42 2.95 16 5 C 0.06 1.62 5.33 -17.47 -0.09 1.53 16 6 N -0.86 -24.36 13.96 55.50 0.77 -23.59 16 7 Si 0.89 19.68 24.93 -169.99 -4.24 15.44 16 8 H -0.27 -5.52 6.62 56.52 0.37 -5.15 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 C 0.45 10.02 7.70 -10.98 -0.08 9.93 16 12 O -0.55 -14.67 15.56 5.55 0.09 -14.58 16 13 C 0.10 1.52 4.03 -5.19 -0.02 1.50 16 14 N -0.70 -11.69 5.51 -59.81 -0.33 -12.02 16 15 C 0.29 3.96 6.61 -83.79 -0.55 3.40 16 16 C -0.20 -2.05 9.32 -39.38 -0.37 -2.42 16 17 C -0.02 -0.17 10.04 -39.61 -0.40 -0.57 16 18 C -0.19 -1.45 10.04 -39.54 -0.40 -1.85 16 19 C -0.01 -0.13 9.64 -39.61 -0.38 -0.51 16 20 C -0.13 -1.80 6.54 -79.75 -0.52 -2.32 16 21 N 0.04 0.63 4.33 34.06 0.15 0.78 16 22 O -0.16 -2.78 18.90 -29.46 -0.56 -3.34 16 23 O -0.17 -3.26 16.60 -29.46 -0.49 -3.75 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.36 3.43 -51.93 -0.18 1.18 16 26 H 0.05 0.75 6.67 -51.93 -0.35 0.40 16 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.09 1.15 7.07 -51.93 -0.37 0.79 16 29 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.42 8.33 4.89 -40.82 -0.20 8.13 16 31 H 0.14 1.18 6.74 -52.49 -0.35 0.83 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.14 1.26 7.98 -52.49 -0.42 0.84 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -33.26 295.83 -6.03 -39.28 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.13 Total: 6.95 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.44 Total: 1.26 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.28 Total: -45.72 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.96 Total: -21.67 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.24 Total: 15.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.26 -6.03 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.135 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds