Wall clock time and date at job start Wed Apr 15 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00103 * 2 1 4 4 H 1.08001 * 120.00829 * 214.14509 * 3 2 1 5 5 C 1.38822 * 119.99650 * 34.15110 * 3 2 1 6 6 N 1.31616 * 119.99958 * 5.37624 * 5 3 2 7 7 Si 1.86799 * 119.99866 * 185.38456 * 5 3 2 8 8 H 1.48493 * 109.47463 * 89.99452 * 7 5 3 9 9 H 1.48499 * 109.46983 * 209.99750 * 7 5 3 10 10 H 1.48499 * 109.47099 * 329.99489 * 7 5 3 11 11 C 1.46505 * 120.00260 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47178 * 89.99542 * 11 2 1 13 13 O 1.21285 * 120.00376 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99786 * 180.02562 * 12 11 2 15 15 C 1.39928 * 119.99978 * 185.61148 * 14 12 11 16 16 C 1.38891 * 120.06610 * 34.92271 * 15 14 12 17 17 C 1.38086 * 119.92539 * 180.02562 * 16 15 14 18 18 C 1.38304 * 120.07159 * 359.73939 * 17 16 15 19 19 C 1.38259 * 120.14168 * 0.51568 * 18 17 16 20 20 C 1.38135 * 120.07011 * 359.48885 * 19 18 17 21 21 N 1.48011 * 120.03905 * 180.27824 * 20 19 18 22 22 O 1.21801 * 119.99687 * 355.10964 * 21 20 19 23 23 O 1.21794 * 119.99856 * 175.10779 * 21 20 19 24 24 H 1.09004 * 109.46873 * 265.04392 * 1 2 3 25 25 H 1.09000 * 109.46946 * 25.04993 * 1 2 3 26 26 H 1.09000 * 109.47263 * 145.05236 * 1 2 3 27 27 H 0.96997 * 120.00143 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46894 * 329.99676 * 11 2 1 29 29 H 1.08997 * 109.46837 * 209.99832 * 11 2 1 30 30 H 0.97005 * 119.99777 * 5.61211 * 14 12 11 31 31 H 1.08002 * 120.03976 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.96757 * 180.02562 * 17 16 15 33 33 H 1.08006 * 119.93313 * 180.27348 * 18 17 16 34 34 H 1.07996 * 119.96608 * 179.75572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0901 1.2666 -0.5249 5 6 1.6351 2.2844 0.6749 6 7 0.5450 2.1588 1.4018 7 14 2.4896 3.9409 0.5513 8 1 1.9346 4.6997 -0.5981 9 1 2.2675 4.7070 1.8039 10 1 3.9461 3.7327 0.3500 11 6 2.1976 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4216 13 8 2.0550 -1.0201 -2.3432 14 7 3.1108 -2.8509 -1.6683 15 6 3.4471 -3.1960 -2.9820 16 6 3.7914 -2.2074 -3.8948 17 6 4.1223 -2.5513 -5.1905 18 6 4.1164 -3.8788 -5.5783 19 6 3.7690 -4.8648 -4.6735 20 6 3.4369 -4.5275 -3.3758 21 7 3.0712 -5.5842 -2.4061 22 8 2.9761 -6.7415 -2.7736 23 8 2.8653 -5.2964 -1.2407 24 1 -0.3633 -0.0888 1.0239 25 1 -0.3633 0.9310 -0.4351 26 1 -0.3634 -0.8423 -0.5887 27 1 0.1856 2.9263 1.8736 28 1 1.6085 -2.0286 0.5130 29 1 3.1500 -1.1385 0.5133 30 1 3.3542 -3.4376 -0.9352 31 1 3.7995 -1.1709 -3.5917 32 1 4.3906 -1.7831 -5.9008 33 1 4.3799 -4.1456 -6.5912 34 1 3.7615 -5.9002 -4.9804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120783478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:36 Heat of formation + Delta-G solvation = 23.935068 kcal Electronic energy + Delta-G solvation = -21499.304549 eV Core-core repulsion = 18016.039194 eV Total energy + Delta-G solvation = -3483.265356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31599 -40.32237 -38.57623 -36.70164 -35.33046 -34.51497 -32.03510 -31.48987 -30.26070 -27.40425 -26.33387 -25.80963 -23.55815 -22.66062 -21.63991 -20.03756 -19.23934 -18.72335 -17.74750 -17.57148 -16.85536 -16.65255 -15.53370 -15.38503 -14.87645 -14.67931 -14.21020 -13.69883 -13.47198 -13.34352 -12.93208 -12.68465 -12.05320 -11.87058 -11.59741 -11.37314 -11.22232 -11.18948 -10.93235 -10.79072 -10.51226 -10.48553 -10.11978 -10.02633 -9.79453 -9.47836 -8.58678 -8.48752 -6.75236 -5.85573 -3.41337 -0.20705 0.83185 1.27847 1.36466 2.90139 3.03215 3.33643 3.34434 3.39757 3.41046 4.19375 4.41566 4.46836 4.67590 4.76212 4.88080 5.21225 5.34563 5.46260 5.59559 5.64733 5.73137 5.93776 6.07027 6.08981 6.23025 6.35136 6.58681 6.76142 7.27824 7.48618 7.59946 7.62729 7.74618 8.31677 8.50985 9.11930 9.69292 10.23112 11.21035 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.004456 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.509967 B = 6281.911394 C = 7016.662882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.568 5.568 3 C -0.265 4.265 4 H 0.063 0.937 5 C 0.015 3.985 6 N -0.900 5.900 7 Si 0.909 3.091 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.278 1.278 11 C 0.136 3.864 12 C 0.477 3.523 13 O -0.499 6.499 14 N -0.680 5.680 15 C 0.241 3.759 16 C -0.132 4.132 17 C -0.045 4.045 18 C -0.148 4.148 19 C -0.039 4.039 20 C -0.091 4.091 21 N 0.044 4.956 22 O -0.166 6.166 23 O -0.178 6.178 24 H 0.027 0.973 25 H 0.052 0.948 26 H -0.005 1.005 27 H 0.256 0.744 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.423 0.577 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -12.570 -10.907 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.287 5.287 3 C -0.394 4.394 4 H 0.080 0.920 5 C -0.184 4.184 6 N -0.542 5.542 7 Si 0.738 3.262 8 H -0.212 1.212 9 H -0.215 1.215 10 H -0.203 1.203 11 C 0.003 3.997 12 C 0.263 3.737 13 O -0.369 6.369 14 N -0.334 5.334 15 C 0.140 3.860 16 C -0.152 4.152 17 C -0.064 4.064 18 C -0.168 4.168 19 C -0.059 4.059 20 C -0.179 4.179 21 N 0.558 4.442 22 O -0.381 6.381 23 O -0.386 6.386 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.266 0.734 31 H 0.175 0.825 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.710 -11.306 -11.693 18.000 hybrid contribution 0.364 0.303 0.369 0.601 sum 8.074 -11.003 -11.324 17.734 Atomic orbital electron populations 1.20836 0.82305 0.97569 0.97671 1.43511 1.01836 0.99646 1.83684 1.19060 1.05470 0.88137 1.26763 0.91974 1.25265 0.97676 0.99256 0.96251 1.70007 1.22226 1.29846 1.32139 0.86205 0.79281 0.83579 0.77107 1.21249 1.21458 1.20286 1.20732 0.99327 0.91163 0.88514 1.24400 0.74913 0.77883 0.96455 1.90648 1.47578 1.52114 1.46601 1.45091 1.56853 1.25739 1.05673 1.17791 0.90559 0.89699 0.87991 1.21399 1.00270 1.00522 0.93058 1.21522 0.92663 0.96721 0.95452 1.21098 1.03520 0.92051 1.00144 1.20850 0.93778 1.02021 0.89246 1.21003 1.19032 0.86480 0.91405 1.43448 0.97512 1.01851 1.01411 1.94510 1.55764 1.04056 1.83761 1.94377 1.54411 1.87444 1.02407 0.95472 0.92922 0.98613 0.93408 0.90487 0.89279 0.73407 0.82460 0.83881 0.83820 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 9.01 59.85 0.54 4.56 16 2 N -0.57 -14.27 2.37 -182.49 -0.43 -14.70 16 3 C -0.26 -7.23 9.54 -15.06 -0.14 -7.38 16 4 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 5 C 0.02 0.43 5.17 -17.43 -0.09 0.34 16 6 N -0.90 -25.83 11.10 55.49 0.62 -25.21 16 7 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 C 0.14 2.68 6.17 -5.19 -0.03 2.65 16 12 C 0.48 9.00 7.62 -10.98 -0.08 8.92 16 13 O -0.50 -11.11 14.24 5.55 0.08 -11.04 16 14 N -0.68 -10.45 4.69 -9.86 -0.05 -10.49 16 15 C 0.24 3.47 6.24 -83.69 -0.52 2.95 16 16 C -0.13 -1.75 8.65 -39.40 -0.34 -2.09 16 17 C -0.04 -0.42 10.04 -39.61 -0.40 -0.82 16 18 C -0.15 -1.22 10.04 -39.55 -0.40 -1.62 16 19 C -0.04 -0.40 9.55 -39.61 -0.38 -0.78 16 20 C -0.09 -1.21 6.86 -79.76 -0.55 -1.76 16 21 N 0.04 0.64 4.45 34.05 0.15 0.79 16 22 O -0.17 -2.42 18.46 -29.46 -0.54 -2.96 16 23 O -0.18 -2.71 15.95 -29.46 -0.47 -3.18 16 24 H 0.03 0.70 7.73 -51.93 -0.40 0.30 16 25 H 0.05 1.43 7.24 -51.93 -0.38 1.06 16 26 H 0.00 -0.11 8.11 -51.93 -0.42 -0.53 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 30 H 0.42 5.76 6.26 -40.82 -0.26 5.51 16 31 H 0.16 2.38 6.55 -52.49 -0.34 2.04 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.15 1.22 7.62 -52.49 -0.40 0.82 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -32.47 302.93 -6.92 -39.40 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.43 Total: 1.32 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.39 Total: 4.98 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.29 Total: -49.61 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.93 Total: -17.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.47 -6.92 -39.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120783478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.333 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds