Wall clock time and date at job start Wed Apr 15 2020 11:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 120.00103 * 2 1 4 4 H 1.08001 * 120.00829 * 214.14509 * 3 2 1 5 5 C 1.38822 * 119.99650 * 34.15110 * 3 2 1 6 6 N 1.31616 * 119.99958 * 5.37624 * 5 3 2 7 7 Si 1.86799 * 119.99866 * 185.38456 * 5 3 2 8 8 H 1.48493 * 109.47463 * 89.99452 * 7 5 3 9 9 H 1.48499 * 109.46983 * 209.99750 * 7 5 3 10 10 H 1.48499 * 109.47099 * 329.99489 * 7 5 3 11 11 C 1.46505 * 120.00260 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47178 * 89.99542 * 11 2 1 13 13 O 1.21285 * 120.00376 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99786 * 180.02562 * 12 11 2 15 15 C 1.39928 * 119.99978 * 185.61148 * 14 12 11 16 16 C 1.38891 * 120.06610 * 34.92271 * 15 14 12 17 17 C 1.38086 * 119.92539 * 180.02562 * 16 15 14 18 18 C 1.38304 * 120.07159 * 359.73939 * 17 16 15 19 19 C 1.38259 * 120.14168 * 0.51568 * 18 17 16 20 20 C 1.38135 * 120.07011 * 359.48885 * 19 18 17 21 21 N 1.48011 * 120.03905 * 180.27824 * 20 19 18 22 22 O 1.21801 * 119.99687 * 355.10964 * 21 20 19 23 23 O 1.21794 * 119.99856 * 175.10779 * 21 20 19 24 24 H 1.09004 * 109.46873 * 265.04392 * 1 2 3 25 25 H 1.09000 * 109.46946 * 25.04993 * 1 2 3 26 26 H 1.09000 * 109.47263 * 145.05236 * 1 2 3 27 27 H 0.96997 * 120.00143 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46894 * 329.99676 * 11 2 1 29 29 H 1.08997 * 109.46837 * 209.99832 * 11 2 1 30 30 H 0.97005 * 119.99777 * 5.61211 * 14 12 11 31 31 H 1.08002 * 120.03976 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.96757 * 180.02562 * 17 16 15 33 33 H 1.08006 * 119.93313 * 180.27348 * 18 17 16 34 34 H 1.07996 * 119.96608 * 179.75572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0901 1.2666 -0.5249 5 6 1.6351 2.2844 0.6749 6 7 0.5450 2.1588 1.4018 7 14 2.4896 3.9409 0.5513 8 1 1.9346 4.6997 -0.5981 9 1 2.2675 4.7070 1.8039 10 1 3.9461 3.7327 0.3500 11 6 2.1976 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4216 13 8 2.0550 -1.0201 -2.3432 14 7 3.1108 -2.8509 -1.6683 15 6 3.4471 -3.1960 -2.9820 16 6 3.7914 -2.2074 -3.8948 17 6 4.1223 -2.5513 -5.1905 18 6 4.1164 -3.8788 -5.5783 19 6 3.7690 -4.8648 -4.6735 20 6 3.4369 -4.5275 -3.3758 21 7 3.0712 -5.5842 -2.4061 22 8 2.9761 -6.7415 -2.7736 23 8 2.8653 -5.2964 -1.2407 24 1 -0.3633 -0.0888 1.0239 25 1 -0.3633 0.9310 -0.4351 26 1 -0.3634 -0.8423 -0.5887 27 1 0.1856 2.9263 1.8736 28 1 1.6085 -2.0286 0.5130 29 1 3.1500 -1.1385 0.5133 30 1 3.3542 -3.4376 -0.9352 31 1 3.7995 -1.1709 -3.5917 32 1 4.3906 -1.7831 -5.9008 33 1 4.3799 -4.1456 -6.5912 34 1 3.7615 -5.9002 -4.9804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120783478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:35 Heat of formation + Delta-G solvation = 3.817765 kcal Electronic energy + Delta-G solvation = -21500.176901 eV Core-core repulsion = 18016.039194 eV Total energy + Delta-G solvation = -3484.137707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.40452 -41.54515 -39.75868 -37.84714 -37.13701 -35.83015 -33.43358 -32.97543 -31.41485 -28.98526 -27.90433 -27.38886 -24.77415 -23.78312 -23.18005 -21.47246 -20.28520 -19.83177 -19.02777 -18.69322 -18.52497 -18.13461 -16.91182 -16.63359 -16.30670 -15.90883 -15.59132 -15.10673 -15.06174 -14.94564 -14.23341 -13.81395 -13.52563 -13.20757 -12.88534 -12.84258 -12.73917 -12.60931 -12.42659 -12.36754 -12.29476 -12.16467 -11.91702 -11.63761 -11.12490 -10.66566 -10.58734 -9.55586 -8.75273 -7.92713 -5.51641 -1.23650 -0.06814 0.27054 0.34046 1.44610 1.46453 1.55158 1.55719 1.82814 2.36611 2.47183 3.24492 3.25069 3.60212 3.64976 3.73818 3.96140 4.04497 4.16208 4.50642 4.54409 4.63081 4.74203 4.77847 4.94686 5.11381 5.16902 5.20771 5.23023 5.52928 5.58324 5.60004 6.19291 6.33381 6.47912 7.03167 7.09386 7.70538 8.20808 9.12695 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.004456 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.509967 B = 6281.911394 C = 7016.662882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.590 5.590 3 C -0.272 4.272 4 H 0.058 0.942 5 C -0.037 4.037 6 N -0.930 5.930 7 Si 0.972 3.028 8 H -0.288 1.288 9 H -0.287 1.287 10 H -0.266 1.266 11 C 0.132 3.868 12 C 0.488 3.512 13 O -0.539 6.539 14 N -0.671 5.671 15 C 0.209 3.791 16 C -0.152 4.152 17 C -0.031 4.031 18 C -0.123 4.123 19 C -0.035 4.035 20 C -0.101 4.101 21 N 0.043 4.957 22 O -0.159 6.159 23 O -0.209 6.209 24 H 0.014 0.986 25 H 0.021 0.979 26 H 0.012 0.988 27 H 0.253 0.747 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.429 0.571 31 H 0.132 0.868 32 H 0.177 0.823 33 H 0.193 0.807 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.730 -13.822 -13.450 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.310 5.310 3 C -0.402 4.402 4 H 0.076 0.924 5 C -0.233 4.233 6 N -0.574 5.574 7 Si 0.799 3.201 8 H -0.215 1.215 9 H -0.213 1.213 10 H -0.191 1.191 11 C 0.001 3.999 12 C 0.275 3.725 13 O -0.414 6.414 14 N -0.325 5.325 15 C 0.109 3.891 16 C -0.173 4.173 17 C -0.049 4.049 18 C -0.142 4.142 19 C -0.055 4.055 20 C -0.189 4.189 21 N 0.553 4.447 22 O -0.377 6.377 23 O -0.411 6.411 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.273 0.727 31 H 0.150 0.850 32 H 0.194 0.806 33 H 0.210 0.790 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.451 -12.610 -14.208 21.218 hybrid contribution -0.074 0.509 0.940 1.071 sum 9.377 -12.101 -13.269 20.258 Atomic orbital electron populations 1.20544 0.82944 0.96516 0.96764 1.43639 1.01840 1.00905 1.84616 1.19274 1.05307 0.89437 1.26177 0.92408 1.26014 0.98466 1.02572 0.96274 1.70144 1.23569 1.30495 1.33208 0.85219 0.78767 0.79359 0.76733 1.21464 1.21316 1.19060 1.20924 0.99838 0.89644 0.89501 1.23645 0.74951 0.78539 0.95347 1.90631 1.49638 1.53727 1.47363 1.44601 1.56366 1.24514 1.06999 1.17939 0.92994 0.90738 0.87399 1.21372 1.01921 0.99156 0.94829 1.21959 0.90329 0.98547 0.94091 1.21664 1.00283 0.90598 1.01609 1.21353 0.92331 1.03953 0.87836 1.21222 1.19982 0.85412 0.92244 1.43695 0.97248 1.02147 1.01574 1.94480 1.55111 1.04500 1.83642 1.94373 1.55951 1.87569 1.03198 0.96780 0.96025 0.96907 0.93770 0.88291 0.87925 0.72671 0.85042 0.80570 0.78986 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.16 9.01 127.77 1.15 10.31 16 2 N -0.59 -30.28 2.37 -731.29 -1.74 -32.01 16 3 C -0.27 -15.14 9.54 84.04 0.80 -14.34 16 4 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 5 C -0.04 -2.05 5.17 84.86 0.44 -1.61 16 6 N -0.93 -54.74 11.10 21.65 0.24 -54.50 16 7 Si 0.97 44.89 29.56 68.60 2.03 46.91 16 8 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 9 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 C 0.13 5.27 6.17 85.63 0.53 5.80 16 12 C 0.49 18.75 7.62 87.66 0.67 19.41 16 13 O -0.54 -24.66 14.24 -3.05 -0.04 -24.71 16 14 N -0.67 -20.82 4.69 -303.50 -1.42 -22.25 16 15 C 0.21 5.89 6.24 38.15 0.24 6.13 16 16 C -0.15 -3.88 8.65 22.39 0.19 -3.69 16 17 C -0.03 -0.47 10.04 22.25 0.22 -0.25 16 18 C -0.12 -1.37 10.04 22.29 0.22 -1.14 16 19 C -0.04 -0.57 9.55 22.25 0.21 -0.36 16 20 C -0.10 -2.50 6.86 36.50 0.25 -2.25 16 21 N 0.04 1.20 4.45 -46.17 -0.21 0.99 16 22 O -0.16 -4.35 18.46 18.89 0.35 -4.00 16 23 O -0.21 -6.38 15.95 18.89 0.30 -6.08 16 24 H 0.01 0.74 7.73 -2.39 -0.02 0.73 16 25 H 0.02 1.20 7.24 -2.39 -0.02 1.18 16 26 H 0.01 0.59 8.11 -2.39 -0.02 0.57 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.10 3.47 8.07 -2.39 -0.02 3.45 16 29 H 0.10 3.76 8.04 -2.39 -0.02 3.74 16 30 H 0.43 11.86 6.26 -92.70 -0.58 11.28 16 31 H 0.13 4.08 6.55 -2.91 -0.02 4.06 16 32 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.19 0.43 8.06 -2.91 -0.02 0.40 16 34 H 0.18 1.99 7.62 -2.91 -0.02 1.97 16 Total: -1.00 -72.86 302.93 5.00 -67.86 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.57 Total: 9.78 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 4.93 Total: 18.01 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -3.13 Total: -107.77 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: 0.61 Total: -34.79 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.86 5.00 -67.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120783478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.678 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds