Wall clock time and date at job start Wed Apr 15 2020 11:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35943 * 116.99808 * 2 1 4 4 C 1.38196 * 120.01166 * 359.72139 * 3 2 1 5 5 C 1.39745 * 119.85836 * 179.74757 * 4 3 2 6 6 C 1.47376 * 120.06841 * 180.23316 * 5 4 3 7 7 N 1.29800 * 120.00407 * 180.27041 * 6 5 4 8 8 N 1.40093 * 120.00096 * 180.02562 * 7 6 5 9 9 C 1.34783 * 120.00194 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99642 * 0.02562 * 9 8 7 11 11 O 1.21592 * 120.00238 * 180.02562 * 9 8 7 12 12 C 1.39816 * 119.86832 * 0.50995 * 5 4 3 13 13 C 1.37777 * 120.01826 * 359.76763 * 12 5 4 14 14 C 1.38958 * 120.13859 * 359.97438 * 13 12 5 15 15 O 1.35705 * 119.92812 * 179.97438 * 14 13 12 16 16 C 1.34786 * 117.00508 * 354.38437 * 15 14 13 17 17 H 1.08004 * 119.99974 * 5.05882 * 16 15 14 18 18 C 1.38616 * 120.00270 * 185.06473 * 16 15 14 19 19 N 1.31582 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47273 * 89.99713 * 20 18 16 22 22 H 1.48493 * 109.47291 * 209.99962 * 20 18 16 23 23 H 1.48499 * 109.46851 * 330.00147 * 20 18 16 24 24 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47514 * 60.00448 * 1 2 3 26 26 H 1.08998 * 109.47061 * 300.00034 * 1 2 3 27 27 H 1.08002 * 120.07072 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.99688 * 0.28117 * 6 5 4 29 29 H 0.97006 * 120.00201 * 0.02562 * 8 7 6 30 30 H 0.97003 * 119.99986 * 359.97438 * 10 9 8 31 31 H 0.96994 * 120.00028 * 180.02562 * 10 9 8 32 32 H 1.08000 * 119.99506 * 179.74700 * 12 5 4 33 33 H 1.07996 * 119.92905 * 179.97438 * 13 12 5 34 34 H 0.97001 * 119.99675 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2937 2.3704 -0.0058 5 6 1.9313 3.6139 -0.0005 6 6 1.1334 4.8529 -0.0014 7 7 1.7270 6.0072 -0.0018 8 7 0.9685 7.1850 -0.0022 9 6 1.5848 8.3837 -0.0030 10 7 2.9310 8.4491 -0.0040 11 8 0.9264 9.4059 -0.0029 12 6 3.3279 3.6802 0.0000 13 6 4.0730 2.5212 0.0000 14 6 3.4395 1.2845 0.0001 15 8 4.1775 0.1457 -0.0005 16 6 5.5132 0.2821 -0.1186 17 1 5.9570 1.2667 -0.1250 18 6 6.3174 -0.8412 -0.2319 19 7 5.7768 -2.0408 -0.2237 20 14 8.1685 -0.6522 -0.3964 21 1 8.7877 -0.6504 0.9533 22 1 8.7131 -1.7833 -1.1894 23 1 8.4761 0.6277 -1.0837 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2151 2.3154 -0.0108 28 1 0.0547 4.8005 -0.0017 29 1 -0.0005 7.1379 -0.0018 30 1 3.4562 7.6335 -0.0037 31 1 3.3746 9.3116 -0.0043 32 1 3.8229 4.6401 0.0000 33 1 5.1517 2.5741 -0.0001 34 1 6.3395 -2.8269 -0.3026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252447620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:44 Heat of formation + Delta-G solvation = -52.245389 kcal Electronic energy + Delta-G solvation = -20525.623934 eV Core-core repulsion = 17039.055146 eV Total energy + Delta-G solvation = -3486.568788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24133 -40.84023 -39.24273 -38.42618 -37.02050 -34.59388 -34.27597 -32.87327 -31.16464 -30.14083 -27.84891 -27.34928 -24.62476 -23.26747 -22.49351 -21.69618 -19.90175 -19.52528 -19.00220 -18.74312 -17.48648 -16.96795 -16.60164 -16.51566 -16.39319 -16.27600 -15.76135 -15.48130 -15.24086 -15.21131 -14.95090 -13.95727 -13.93030 -13.46663 -12.99247 -12.95872 -12.68815 -12.53747 -12.17247 -12.02763 -11.84491 -11.77149 -11.47575 -11.14657 -10.85999 -10.73560 -10.10043 -9.38324 -8.51058 -8.44050 -6.08725 -0.04399 0.62589 1.36506 1.39313 1.52039 1.52805 1.56865 2.17787 2.19910 2.63335 2.88852 2.92726 3.19069 3.42421 3.83092 4.03210 4.33280 4.35761 4.44248 4.53007 4.55285 4.72476 4.80441 4.84345 4.99403 5.15839 5.41054 5.53796 5.62545 5.74239 5.92139 5.96190 6.02505 6.27830 6.68659 6.99490 7.13186 7.59052 7.79938 8.77789 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.003971 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.765197 B = 7049.147496 C = 8586.037618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.345 6.345 3 C 0.039 3.961 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.162 3.838 7 N -0.286 5.286 8 N -0.584 5.584 9 C 0.730 3.270 10 N -0.836 5.836 11 O -0.636 6.636 12 C -0.052 4.052 13 C -0.222 4.222 14 C 0.103 3.897 15 O -0.214 6.214 16 C -0.413 4.413 17 H 0.109 0.891 18 C -0.022 4.022 19 N -0.916 5.916 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.249 1.249 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.406 0.594 30 H 0.416 0.584 31 H 0.421 0.579 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 12.128 0.146 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C -0.006 4.006 4 C -0.139 4.139 5 C -0.114 4.114 6 C -0.046 4.046 7 N -0.095 5.095 8 N -0.332 5.332 9 C 0.428 3.572 10 N -0.404 5.404 11 O -0.515 6.515 12 C -0.072 4.072 13 C -0.241 4.241 14 C 0.050 3.950 15 O -0.119 6.119 16 C -0.489 4.489 17 H 0.126 0.874 18 C -0.220 4.220 19 N -0.553 5.553 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.173 1.173 24 H 0.122 0.878 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.187 0.813 28 H 0.171 0.829 29 H 0.248 0.752 30 H 0.248 0.752 31 H 0.254 0.746 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.482 12.750 0.147 14.784 hybrid contribution -0.120 -0.703 -0.037 0.714 sum -7.602 12.047 0.109 14.246 Atomic orbital electron populations 1.23302 0.76938 1.04920 1.02432 1.86208 1.23126 1.26849 1.89885 1.18315 0.88854 0.85965 1.07440 1.21103 1.00526 0.89068 1.03201 1.17827 0.92210 0.90280 1.11127 1.24237 0.98970 0.88695 0.92744 1.74389 1.24591 0.93354 1.17183 1.46126 1.08532 1.01746 1.76750 1.15606 0.83512 0.81457 0.76606 1.42828 1.04396 1.14006 1.79206 1.90999 1.66120 1.33162 1.61241 1.21140 0.93081 0.97391 0.95611 1.21012 1.00983 0.90957 1.11191 1.19603 0.89858 0.87936 0.97577 1.84003 1.20068 1.27911 1.79908 1.21935 0.78998 0.95806 1.52111 0.87425 1.26609 1.05961 0.93611 0.95813 1.70226 1.38361 0.98752 1.47939 0.84588 0.73470 0.79085 0.79114 1.18857 1.19925 1.17260 0.87770 0.91166 0.91115 0.81318 0.82884 0.75227 0.75248 0.74588 0.83600 0.85124 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.35 -13.94 10.28 -78.93 -0.81 -14.75 16 3 C 0.04 1.55 6.70 22.57 0.15 1.70 16 4 C -0.12 -3.27 8.77 22.62 0.20 -3.08 16 5 C -0.11 -2.89 5.87 -20.13 -0.12 -3.01 16 6 C 0.16 3.05 10.74 87.40 0.94 3.99 16 7 N -0.29 -5.81 9.46 -52.22 -0.49 -6.31 16 8 N -0.58 -11.77 6.27 -184.74 -1.16 -12.92 16 9 C 0.73 17.53 8.95 179.05 1.60 19.13 16 10 N -0.84 -14.77 8.84 -184.74 -1.63 -16.41 16 11 O -0.64 -19.93 18.02 -4.01 -0.07 -20.01 16 12 C -0.05 -1.57 9.57 22.54 0.22 -1.36 16 13 C -0.22 -8.76 9.14 22.33 0.20 -8.55 16 14 C 0.10 4.84 6.67 22.75 0.15 5.00 16 15 O -0.21 -12.52 9.53 -7.82 -0.07 -12.59 16 16 C -0.41 -23.11 9.48 67.91 0.64 -22.46 16 17 H 0.11 5.40 5.19 -2.91 -0.02 5.38 16 18 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 19 N -0.92 -55.35 13.67 21.61 0.30 -55.05 16 20 Si 1.02 41.35 29.55 68.60 2.03 43.38 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 24 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 1.35 7.65 -2.39 -0.02 1.34 16 26 H 0.07 1.35 7.67 -2.39 -0.02 1.34 16 27 H 0.17 3.12 6.28 -2.91 -0.02 3.10 16 28 H 0.15 1.69 8.02 -2.91 -0.02 1.67 16 29 H 0.41 6.66 8.75 -213.32 -1.87 4.79 16 30 H 0.42 6.59 7.87 -92.71 -0.73 5.86 16 31 H 0.42 5.85 8.93 -92.71 -0.83 5.03 16 32 H 0.15 3.66 7.54 -2.91 -0.02 3.64 16 33 H 0.13 5.20 5.62 -2.91 -0.02 5.19 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -78.23 308.09 1.42 -76.81 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -2.23 Total: 25.66 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.57 Total: -7.82 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -2.99 Total: -90.69 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.96 Total: -47.35 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -78.23 1.42 -76.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252447620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.562 kcal (2) G-P(sol) polarization free energy of solvation -78.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds